View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20044_low_5 (Length: 463)
Name: NF20044_low_5
Description: NF20044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20044_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 3e-64; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 308 - 444
Target Start/End: Complemental strand, 7658385 - 7658249
Alignment:
| Q |
308 |
ctcatttcttcttcttttcttctcttgccaacatcaccaattcaacatctcatttcttcacataacactgcagcttgaagtattttcatcattgaaaaag |
407 |
Q |
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| T |
7658385 |
ctcatttctacttcttttcttctcttgccaacatcacgaattcaacatctcatttcttcacataacactgcagcttgaagtattttcatcattgaaaaag |
7658286 |
T |
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| Q |
408 |
ttggagtatggatcatgaggatgttgaggtggaggag |
444 |
Q |
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| T |
7658285 |
ttggagtatggatcatgaggatgttgtggtggaggag |
7658249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 364 - 444
Target Start/End: Complemental strand, 7652904 - 7652824
Alignment:
| Q |
364 |
ttcacataacactgcagcttgaagtattttcatcattgaaaaagttggagtatggatcatgaggatgttgaggtggaggag |
444 |
Q |
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| T |
7652904 |
ttcacataacagtgcagtttgaagtattttcatcattgaaatagttggagtattgatcatgaggatattgtggtggaggag |
7652824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 7658683 - 7658621
Alignment:
| Q |
14 |
cataggctaaaaattaatactcctaataatgattgtccagaaaaagaacaattagtccttgag |
76 |
Q |
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| T |
7658683 |
cataagctaaaaaataatactcctaataatgattgtccagaaaaagaacaattagtccttgag |
7658621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 7658497 - 7658457
Alignment:
| Q |
198 |
tactagctcctctatagtaatttaaagttcaggttttataa |
238 |
Q |
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| T |
7658497 |
tactagctcctctatagtaatttaaagttcaggttttataa |
7658457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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