View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20044_low_6 (Length: 423)

Name: NF20044_low_6
Description: NF20044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20044_low_6
NF20044_low_6
[»] chr6 (3 HSPs)
chr6 (14-405)||(2879604-2879995)
chr6 (13-129)||(35023633-35023749)
chr6 (15-180)||(33353896-33354058)
[»] chr4 (7 HSPs)
chr4 (138-405)||(53436291-53436540)
chr4 (13-145)||(53436905-53437036)
chr4 (13-129)||(46671342-46671458)
chr4 (16-106)||(16420163-16420253)
chr4 (16-103)||(55585154-55585241)
chr4 (13-54)||(53438428-53438469)
chr4 (44-127)||(987397-987480)
[»] scaffold0144 (1 HSPs)
scaffold0144 (13-181)||(40224-40392)
[»] chr7 (2 HSPs)
chr7 (13-129)||(23409579-23409695)
chr7 (14-106)||(9954113-9954205)
[»] chr2 (3 HSPs)
chr2 (18-129)||(41362948-41363059)
chr2 (47-181)||(28633687-28633821)
chr2 (13-87)||(44679929-44680003)
[»] scaffold0434 (1 HSPs)
scaffold0434 (10-106)||(11089-11185)
[»] scaffold0049 (1 HSPs)
scaffold0049 (13-106)||(38709-38802)
[»] scaffold0007 (1 HSPs)
scaffold0007 (13-106)||(275570-275663)
[»] chr3 (3 HSPs)
chr3 (13-106)||(27088750-27088843)
chr3 (14-76)||(11773687-11773749)
chr3 (54-106)||(11776443-11776495)
[»] chr5 (1 HSPs)
chr5 (109-165)||(32837669-32837725)


Alignment Details
Target: chr6 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 14 - 405
Target Start/End: Complemental strand, 2879995 - 2879604
Alignment:
Q  14 agagataagaaaaatgattcaataaacttcttcaataatcaaaagaaaatcatataacaaaagttgtcatctagatactctcatccctaacaacatgaaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2879995 agagataagaaaaatgattcaataaacttcttcaataatcaaaagaaaatcatataacaaaagttgtcatctagatactctcatccctaacaacatgaaa 2879896  T
Q  114 attagctactcatgataaagaaaataaacaacaaagaaaagagaataaaccggacaaattttccgacaagaccaacgtcaccctgcatcgccgttctcaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  2879895 attagctactcatgataaagaaaataaacaacaaagaaaagagaataaaccggacaaattttccgacaagaccaacgtcaccctgcatcgtcgttctcta 2879796  T
Q  214 tccggatccctttaattgtcgttgccttcctttcccattgtcatgcgctgcttcttctctctggttcccgaaagtcccttgtatttgttgcagctgcctc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2879795 tccggatccctttaattgtcgttgccttcctttcccattgtcatgcgctgcttcttctctctggttcccaaaagtcccttgtatttgttgcagctgcctc 2879696  T
Q  314 ctttttatattccaaatcaagtgaaacctaattccactcctccaatcacgtgctctctttcttcatgtcaaggtcacttgttgtggtgggac 405  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2879695 ctttttatattccaaaacaagtgaaacctaattcccctcctccaatcacgtgctctctttcttcatgtcaaggtcacttgttgtggtgggac 2879604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 35023749 - 35023633
Alignment:
Q  13 cagagataagaaaaatgattcaataaacttcttcaataatcaaaagaaaatcatataacaaaagttgtcatctagatactctcatccctaacaacatgaa 112  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||| ||||||||||| |||||||||||||||||  ||    
T  35023749 cagagataagaaaaatgattcaataaacttattcaataatcaaaagaaagtcatagaacaaaagttatcatctagataatctcatccctaacaacaaaaa 35023650  T
Q  113 aattagctactcatgat 129  Q
    |||||||||||||||||    
T  35023649 aattagctactcatgat 35023633  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 33354058 - 33353896
Alignment:
Q  15 gagataagaaaaatgattcaataaacttcttcaataatcaaaagaaaatcatataacaaaagttgtcatctagatactctcatccctaacaacatgaaaa 114  Q
    |||||||||||||| |||||||||  ||| ||||||| || ||  |||||| || ||||||||  |||||||| ||  |||||||| || ||| || |      
T  33354058 gagataagaaaaataattcaataagtttcatcaataaacataatcaaatcacatgacaaaagtattcatctaggtatactcatccccaataacttggagt 33353959  T
Q  115 ttagctactcatgataaagaaaataaacaacaaagaaaagagaataaaccggacaaattttccgac 180  Q
    |||||||||||||||||   |||||   |||||||||||||||||||||||||  || ||||||||    
T  33353958 ttagctactcatgataagacaaata---aacaaagaaaagagaataaaccggaagaaatttccgac 33353896  T

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Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 138 - 405
Target Start/End: Complemental strand, 53436540 - 53436291
Alignment:
Q  138 taaacaacaaagaaaagagaataaaccggacaaattttccgacaagaccaacgtcaccctgcatcgccgttctcaatccggatccctttaattgtcgttg 237  Q
    |||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||| |||||||||||||||||||||||||    
T  53436540 taaacaacaaagaaaagagaataaaccggacaaattttc-------------gtcaccctgcatcgccgttctctatccggatccctttaattgtcgttg 53436454  T
Q  238 ccttcctttcccattgtcatgcgctgcttcttctctctggttcccgaaagtcccttgtatttgttgcagctgcctcctttttatattccaaatcaagtga 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||     |||||||    
T  53436453 ccttcctttcccattgtcatgcgctgcttcttctctctggttcccaaaagtccctcgtatttgttgcagctccctcctttttatattc-----caagtga 53436359  T
Q  338 aacctaattccactcctccaatcacgtgctctctttcttcatgtcaaggtcacttgttgtggtgggac 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  53436358 aacctaattccactcctccaatcacgtgctctctttcttcatgtcaaggtcacttgttgtgatgggac 53436291  T

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Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 53437036 - 53436905
Alignment:
Q  13 cagagataagaaaaatgattcaataaacttcttcaataatcaaaagaaaatcatataacaaaagttgtcatctagatactctcatccctaacaacatgaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  53437036 cagagataagaaaaatgattcaataaacttcttcaataatcagaa-aaagtcatataacaaaagttgtcatctcgatactctcatccctaacaacatgaa 53436938  T
Q  113 aattagctactcatgataaagaaaataaacaac 145  Q
    |||||||||||||||||||||||||||||||||    
T  53436937 aattagctactcatgataaagaaaataaacaac 53436905  T

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Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 46671342 - 46671458
Alignment:
Q  13 cagagataagaaaaatgattcaataaacttcttcaataatcaaaagaaaatcatataacaaaagttgtcatctagatactctcatccctaacaacatgaa 112  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||| | ||| ||||||||||||||| |||||| ||||||||||||||||| |||    
T  46671342 cagagataagaaaaatgattcaataaacttattcaataatcaaaataaagttatagaacaaaagttgtcatttagataatctcatccctaacaacaagaa 46671441  T
Q  113 aattagctactcatgat 129  Q
    |||||||||||||||||    
T  46671442 aattagctactcatgat 46671458  T

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Target: chr4; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 16420253 - 16420163
Alignment:
Q  16 agataagaaaaatgattcaataaacttcttcaataatcaaaagaaaatcatataacaaaagttgtcatctagatactctcatccctaacaa 106  Q
    |||||||||||||||||||||||||||||||||||||||||  ||| ||||| |||||||||||||||||||||| |||||||||||||||    
T  16420253 agataagaaaaatgattcaataaacttcttcaataatcaaattaaagtcatagaacaaaagttgtcatctagataatctcatccctaacaa 16420163  T

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Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 55585154 - 55585241
Alignment:
Q  16 agataagaaaaatgattcaataaacttcttcaataatcaaaagaaaatcatataacaaaagttgtcatctagatactctcatccctaa 103  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||| |||||| ||||||||||||||||||||| ||||||||||||    
T  55585154 agataagaaaaatgattcaataaacttcatcaataatcaaaataaagtcatatgacaaaagttgtcatctagataatctcatccctaa 55585241  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 53438469 - 53438428
Alignment:
Q  13 cagagataagaaaaatgattcaataaacttcttcaataatca 54  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  53438469 cagagataagaaaaatgattcaataaacttcttcaataatca 53438428  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 987480 - 987397
Alignment:
Q  44 ttcaataatcaaaagaaaatcatataacaaaagttgtcatctagatactctcatccctaacaacatgaaaattagctactcatg 127  Q
    |||||||||||||| |||||||||  ||||||||||||||||| ||| | ||||| ||||||| |   |||||||| |||||||    
T  987480 ttcaataatcaaaataaaatcatagtacaaaagttgtcatctaaataatttcatctctaacaataaagaaattagccactcatg 987397  T

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Target: scaffold0144 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 40224 - 40392
Alignment:
Q  13 cagagataagaaaaatgattcaataaacttcttcaataatcaaaagaaaatcatataacaaaagttgtcatctagatactctcatccctaacaacatgaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||| |||||   | |    
T  40224 cagagataagaaaaatgattcaataaacttcttcaataatcaaaagaaagtcatagaacaaaagttgtcatctagataatctcatcccaaacaattggga 40323  T
Q  113 aattagctactcatgataaagaaaataaacaacaaagaaaagagaataaaccggacaaattttccgaca 181  Q
    |  |||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| ||||    
T  40324 atctagctactcatggtaaagaaaacaaacaacaaagaaaagagaataaaccagacaaattttctgaca 40392  T

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Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 23409695 - 23409579
Alignment:
Q  13 cagagataagaaaaatgattcaataaacttcttcaataatcaaaagaaaatcatataacaaaagttgtcatctagatactctcatccctaacaacatgaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||    
T  23409695 cagagataagaaaaatgattcaataaacttcttcaataatcaaaagaaaatcatagaacaaaagttgtcatctagataatctcatccctaacaacacgaa 23409596  T
Q  113 aattagctactcatgat 129  Q
    |||||||||||||||||    
T  23409595 aattagctactcatgat 23409579  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 9954113 - 9954205
Alignment:
Q  14 agagataagaaaaatgattcaataaacttcttcaataatcaaaagaaaatcatataacaaaagttgtcatctagatactctcatccctaacaa 106  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||| | |||| ||||||||||||||||||||| |||||||||||||||    
T  9954113 agagataagaaaaatgattcaataaacttcatcaataatcaaaataaagtaatatgacaaaagttgtcatctagataatctcatccctaacaa 9954205  T

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Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 41363059 - 41362948
Alignment:
Q  18 ataagaaaaatgattcaataaacttcttcaataatcaaaagaaaatcatataacaaaagttgtcatctagatactctcatccctaacaacatgaaaatta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||| ||||||||| |||||||    
T  41363059 ataagaaaaatgattcaataaacttcttcaataatcaaaagaaagtcatagaacaaaagttgtcatctagataatctcatccataacaacataaaaatta 41362960  T
Q  118 gctactcatgat 129  Q
    ||||||||||||    
T  41362959 gctactcatgat 41362948  T

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Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 47 - 181
Target Start/End: Complemental strand, 28633821 - 28633687
Alignment:
Q  47 aataatcaaaagaaaatcatataacaaaagttgtcatctagatactctcatccctaacaacatgaaaat-tagctactcatgataaagaaaataaacaac 145  Q
    ||||||||||||||| ||||| |||||||||||||||||||||| | |||||||||||||  ||| ||| ||||||||||||||||||||||||||||||    
T  28633821 aataatcaaaagaaagtcatagaacaaaagttgtcatctagataatttcatccctaacaat-tgagaatctagctactcatgataaagaaaataaacaac 28633723  T
Q  146 aaagaaaagagaataaaccggacaaattttccgaca 181  Q
    ||||||||||||||||||| ||||||||||| ||||    
T  28633722 aaagaaaagagaataaaccagacaaattttctgaca 28633687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 44679929 - 44680003
Alignment:
Q  13 cagagataagaaaaatgattcaataaacttcttcaataatcaaaagaaaatcatataacaaaagttgtcatctag 87  Q
    ||||||||||||||||||||||||||||||| |||||||| | || ||| |||||||||||||||| ||||||||    
T  44679929 cagagataagaaaaatgattcaataaacttcatcaataattagaataaagtcatataacaaaagttttcatctag 44680003  T

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Target: scaffold0434 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 11185 - 11089
Alignment:
Q  10 gagcagagataagaaaaatgattcaataaacttcttcaataatcaaaagaaaatcatataacaaaagttgtcatctagatactctcatccctaacaa 106  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||| ||||||||||||||||||||| |||||||||||||||    
T  11185 gagcagagataagaaaaatgattcaataaacttcatcaataatcaaaataaagtcatatgacaaaagttgtcatctagataatctcatccctaacaa 11089  T

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Target: scaffold0049 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 38709 - 38802
Alignment:
Q  13 cagagataagaaaaatgattcaataaacttcttcaataatcaaaagaaaatcatataacaaaagttgtcatctagatactctcatccctaacaa 106  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||| ||||||||||||||||||||| |||||||||||||||    
T  38709 cagagataagaaaaatgattcaataaacttcatcaataatcaaaataaagtcatatgacaaaagttgtcatctagataatctcatccctaacaa 38802  T

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Target: scaffold0007 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 275663 - 275570
Alignment:
Q  13 cagagataagaaaaatgattcaataaacttcttcaataatcaaaagaaaatcatataacaaaagttgtcatctagatactctcatccctaacaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||| ||||| |||||||||||||||||||||| |||||||||||||||    
T  275663 cagagataagaaaaatgattcaataaacttcttcaataatcaaattaaagtcatagaacaaaagttgtcatctagataatctcatccctaacaa 275570  T

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Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 27088750 - 27088843
Alignment:
Q  13 cagagataagaaaaatgattcaataaacttcttcaataatcaaaagaaaatcatataacaaaagttgtcatctagatactctcatccctaacaa 106  Q
    |||||||||||||||||||| |||||||||| |||||||||| || ||| ||||| |||||||||||||||||||||| |||||||||||||||    
T  27088750 cagagataagaaaaatgatttaataaacttcatcaataatcagaataaagtcatagaacaaaagttgtcatctagataatctcatccctaacaa 27088843  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 11773687 - 11773749
Alignment:
Q  14 agagataagaaaaatgattcaataaacttcttcaataatcaaaagaaaatcatataacaaaag 76  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||| |||||| |||||||    
T  11773687 agagataagaaaaatgattcaataaacttcatcaataatcaaaataaagtcatatgacaaaag 11773749  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 11776443 - 11776495
Alignment:
Q  54 aaaagaaaatcatataacaaaagttgtcatctagatactctcatccctaacaa 106  Q
    |||| ||| |||||| ||||||||||||||||||||| |||||||||||||||    
T  11776443 aaaaaaaagtcatatgacaaaagttgtcatctagataatctcatccctaacaa 11776495  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 32837725 - 32837669
Alignment:
Q  109 tgaaaattagctactcatgataaagaaaataaacaacaaagaaaagagaataaaccg 165  Q
    |||||||||||||  |||||||||  |||||||||||| || ||||| |||||||||    
T  32837725 tgaaaattagctagacatgataaaagaaataaacaacatagtaaagaaaataaaccg 32837669  T

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