View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20044_low_7 (Length: 355)
Name: NF20044_low_7
Description: NF20044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20044_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 43915404 - 43915748
Alignment:
| Q |
1 |
ttgccaatcctcaatcaacccccatcggtgataattcctacataccagtactacaaccacctcaaaaacccttcgacatccctcttcctccaccaccact |
100 |
Q |
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| T |
43915404 |
ttgccaatcctcaatcaaccaccatcggtgataattcctacataccagtactacaaccacctcaaaaacccttcgacatccctcttcctccaccaccact |
43915503 |
T |
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| Q |
101 |
tcctgaagatttctctcctgcgcttcaacgtgctgcgtccatgcctgaaatcaagatcaataagcccgatcctaggcccatgcccaatcccattcttgag |
200 |
Q |
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| T |
43915504 |
tcctgaagatttctctcctgcgcttcaacgtgctgcttccatgcctgaaatcaagatcaataagcccgatcctaggcccatgcccaatcccattctcgag |
43915603 |
T |
|
| Q |
201 |
gaagaagatgatgaagaactagaaaatgaaggctctttgaggaaaagaagaagtaatagaaacgttggtgttggtgttggtgttgggggtgtgaatagta |
300 |
Q |
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| T |
43915604 |
gaagaagatgatgaagaactagaaaatgaaggctctttgaggaaaagaagaagtaatagaaacgttggtgttggtgttgttgttgggggtgtgaatagta |
43915703 |
T |
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| Q |
301 |
atagaagattagaggatgaagaaattgaagctccaccacctatgc |
345 |
Q |
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| T |
43915704 |
atagaagattagaggatgaagaaattgaagctccaccacctatgc |
43915748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 26 - 346
Target Start/End: Complemental strand, 37400102 - 37399800
Alignment:
| Q |
26 |
cggtgataattcctacataccagtactacaaccacctcaaaaacccttcgacatccctcttcctccaccaccacttcctgaagatttctctcctgcgc-- |
123 |
Q |
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| T |
37400102 |
cggtgataattcctacataccagtac------cacctcaaaaacccttcaacatccctcttactccaccattacttcccga---tttctccccttcacct |
37400012 |
T |
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| Q |
124 |
-ttcaacgtgctgcgtccatgcctgaaatcaagatcaataagcccgatcctaggcccatgcccaatcccattcttgaggaagaagatgatgaagaactag |
222 |
Q |
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| T |
37400011 |
cttcaacatgctgcttccatgtctgaaatcaagatcaataatcccgatcctaggcccatgccctagcccattcttgaggaggaggatgatgaagaattag |
37399912 |
T |
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| Q |
223 |
aaaatgaaggctctttgaggaaaagaagaagtaatagaaacgttggtgttggtgttggtgttgggggtgtgaatagtaatagaagattagaggatgaaga |
322 |
Q |
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| T |
37399911 |
agaacgaaggctctttgaggaaaagaagaagtaatagaaacgttggtgttggt------------ggtgtgaatagcagtagaagattagaggatgaaga |
37399824 |
T |
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| Q |
323 |
aattgaagctccaccacctatgct |
346 |
Q |
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| T |
37399823 |
agatgaagctccaccacctttgct |
37399800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 56 - 276
Target Start/End: Complemental strand, 1297560 - 1297335
Alignment:
| Q |
56 |
accacctcaaaaacccttcgacatccctcttcctccaccaccacttcctgaagatttctctcctg-----cgcttcaacgtgctgcgtccatgcctgaaa |
150 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||| ||||||| || ||||||||| | ||||||| |||||| |||||| |||||| |
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| T |
1297560 |
accacctcaaaaacccttcgacaaccctcttcctccaccatcacttcccga---tttctctccccttcacctcttcaacttgctgcttccatgtctgaaa |
1297464 |
T |
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| Q |
151 |
tcaagatcaataagcccgatcctaggcccatgcccaatccca------ttcttgaggaagaagatgatgaagaactagaaaatgaaggctctttgaggaa |
244 |
Q |
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| T |
1297463 |
tcaagatcaataagcctgatcctaggcccatgcccaagcccaagcccgttcttgaggaggaggatgatgaagaattagagaatgaaggctctttgaggaa |
1297364 |
T |
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| Q |
245 |
aagaagaagtaatagaaacgttggtgttggtg |
276 |
Q |
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| T |
1297363 |
aa---gaagtaatagaaacgttggtgttggtg |
1297335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 346
Target Start/End: Complemental strand, 1297320 - 1297250
Alignment:
| Q |
276 |
gttggtgttgggggtgtgaatagtaatagaagattagaggatgaagaaattgaagctccaccacctatgct |
346 |
Q |
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| T |
1297320 |
gttggtgctggaggcgtgaatagcagtataagattagaggatgaagaagatgaagctccaccacctttgct |
1297250 |
T |
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