View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20044_low_8 (Length: 352)

Name: NF20044_low_8
Description: NF20044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20044_low_8
NF20044_low_8
[»] chr4 (7 HSPs)
chr4 (1-235)||(38078666-38078901)
chr4 (257-294)||(38078928-38078965)
chr4 (257-296)||(5591143-5591182)
chr4 (257-296)||(27587543-27587582)
chr4 (257-296)||(48127188-48127227)
chr4 (257-296)||(54055160-54055199)
chr4 (257-293)||(29973421-29973457)
[»] chr8 (5 HSPs)
chr8 (257-296)||(34179393-34179432)
chr8 (257-296)||(39460888-39460927)
chr8 (257-289)||(9208439-9208471)
chr8 (257-296)||(13474511-13474550)
chr8 (257-296)||(43275694-43275733)
[»] chr1 (2 HSPs)
chr1 (257-296)||(18297354-18297393)
chr1 (257-296)||(14485784-14485823)
[»] chr6 (3 HSPs)
chr6 (257-296)||(19986899-19986938)
chr6 (257-297)||(22425944-22425984)
chr6 (257-288)||(2925798-2925829)
[»] chr2 (2 HSPs)
chr2 (257-296)||(30956573-30956612)
chr2 (257-296)||(22302237-22302276)
[»] chr7 (1 HSPs)
chr7 (257-295)||(48709316-48709354)
[»] scaffold0018 (2 HSPs)
scaffold0018 (257-296)||(30346-30385)
scaffold0018 (259-296)||(30159-30196)
[»] chr5 (1 HSPs)
chr5 (263-296)||(23129250-23129283)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 38078666 - 38078901
Alignment:
Q  1 ctgtgaatgccttcaaataattggaaggtcaacattgaatcttatgaatgacatccaagagggttgtcttacattgcgatggattttaacctaaaaagct 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38078666 ctgtgaatgccttcaaataattggaaggttaacattgaatcttatgaatgacatccaagagggttgtcttacattgcaatggattttaacctaaaaagct 38078765  T
Q  101 attacgtgttaatctaaggttagttaattttctgagacccaaggctttgattggcttgaagaaatcgatttacatttatatgatgatc-aaggtagcatt 199  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||    
T  38078766 attacgtgttaatctaaggttaattaattttctgagactcaaggctttgattggcttgaagaaatcgattgacatttctatgatgatcaaaggtagcatt 38078865  T
Q  200 aataatttgaccggatgcaacgtcttctttcaaatc 235  Q
    |||||||||| |||||||||||||||||||||||||    
T  38078866 aataatttgatcggatgcaacgtcttctttcaaatc 38078901  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 38078928 - 38078965
Alignment:
Q  257 tgaaggtccaagttagcaaaagtgcacatttttatttg 294  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  38078928 tgaaggttcaagttagcaaaagtgcacatttttatttg 38078965  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 296
Target Start/End: Original strand, 5591143 - 5591182
Alignment:
Q  257 tgaaggtccaagttagcaaaagtgcacatttttatttgga 296  Q
    ||||||||||||||||||||||||||| |||| |||||||    
T  5591143 tgaaggtccaagttagcaaaagtgcaccttttcatttgga 5591182  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 296
Target Start/End: Original strand, 27587543 - 27587582
Alignment:
Q  257 tgaaggtccaagttagcaaaagtgcacatttttatttgga 296  Q
    ||||||||||||||||||||||||||| |||| |||||||    
T  27587543 tgaaggtccaagttagcaaaagtgcaccttttcatttgga 27587582  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 296
Target Start/End: Complemental strand, 48127227 - 48127188
Alignment:
Q  257 tgaaggtccaagttagcaaaagtgcacatttttatttgga 296  Q
    ||||||||||||||||||||||||||| |||| |||||||    
T  48127227 tgaaggtccaagttagcaaaagtgcaccttttcatttgga 48127188  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 296
Target Start/End: Complemental strand, 54055199 - 54055160
Alignment:
Q  257 tgaaggtccaagttagcaaaagtgcacatttttatttgga 296  Q
    ||||||||||||||||||||||||||| |||| |||||||    
T  54055199 tgaaggtccaagttagcaaaagtgcaccttttcatttgga 54055160  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 29973457 - 29973421
Alignment:
Q  257 tgaaggtccaagttagcaaaagtgcacatttttattt 293  Q
    |||||||||||||||||||||| |||||| |||||||    
T  29973457 tgaaggtccaagttagcaaaagcgcacatgtttattt 29973421  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 296
Target Start/End: Original strand, 34179393 - 34179432
Alignment:
Q  257 tgaaggtccaagttagcaaaagtgcacatttttatttgga 296  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34179393 tgaaggtccaagttagcaaaagtgcacatttttatttgga 34179432  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 296
Target Start/End: Complemental strand, 39460927 - 39460888
Alignment:
Q  257 tgaaggtccaagttagcaaaagtgcacatttttatttgga 296  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  39460927 tgaaggtccaagttagcaaaagtgcacctttttatttgga 39460888  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 289
Target Start/End: Original strand, 9208439 - 9208471
Alignment:
Q  257 tgaaggtccaagttagcaaaagtgcacattttt 289  Q
    |||||||||||||||||||||||||||||||||    
T  9208439 tgaaggtccaagttagcaaaagtgcacattttt 9208471  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 296
Target Start/End: Complemental strand, 13474550 - 13474511
Alignment:
Q  257 tgaaggtccaagttagcaaaagtgcacatttttatttgga 296  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  13474550 tgaaagtccaagttagcaatagtgcacatttttatttgga 13474511  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 296
Target Start/End: Complemental strand, 43275733 - 43275694
Alignment:
Q  257 tgaaggtccaagttagcaaaagtgcacatttttatttgga 296  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  43275733 tgaaggtctaagttagcaaaagtgcatatttttatttgga 43275694  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 296
Target Start/End: Original strand, 18297354 - 18297393
Alignment:
Q  257 tgaaggtccaagttagcaaaagtgcacatttttatttgga 296  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  18297354 tgaaggtccaagttagcaaaagtgcacatttttatttgga 18297393  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 296
Target Start/End: Complemental strand, 14485823 - 14485784
Alignment:
Q  257 tgaaggtccaagttagcaaaagtgcacatttttatttgga 296  Q
    |||||||||||||||| |||||||||| ||||||||||||    
T  14485823 tgaaggtccaagttagaaaaagtgcacctttttatttgga 14485784  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 296
Target Start/End: Complemental strand, 19986938 - 19986899
Alignment:
Q  257 tgaaggtccaagttagcaaaagtgcacatttttatttgga 296  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  19986938 tgaaggtccaagttagcaaaaatgcacatttttatttgga 19986899  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 22425984 - 22425944
Alignment:
Q  257 tgaaggtccaagttagcaaaagtgcacatttttatttggat 297  Q
    |||||||||||||||||||||||| |||||||||| |||||    
T  22425984 tgaaggtccaagttagcaaaagtgaacatttttatgtggat 22425944  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 288
Target Start/End: Original strand, 2925798 - 2925829
Alignment:
Q  257 tgaaggtccaagttagcaaaagtgcacatttt 288  Q
    ||||||||||||||||||||||||||||||||    
T  2925798 tgaaggtccaagttagcaaaagtgcacatttt 2925829  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 296
Target Start/End: Original strand, 30956573 - 30956612
Alignment:
Q  257 tgaaggtccaagttagcaaaagtgcacatttttatttgga 296  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  30956573 tgaaggtccaagttagcaaaagtgcacattttcatttgga 30956612  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 296
Target Start/End: Original strand, 22302237 - 22302276
Alignment:
Q  257 tgaaggtccaagttagcaaaagtgcacatttttatttgga 296  Q
    ||||||||||||||||||||||||||| |||| |||||||    
T  22302237 tgaaggtccaagttagcaaaagtgcaccttttcatttgga 22302276  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 295
Target Start/End: Original strand, 48709316 - 48709354
Alignment:
Q  257 tgaaggtccaagttagcaaaagtgcacatttttatttgg 295  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  48709316 tgaaggtccaagttagcaaaagtgcacattttcatttgg 48709354  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 296
Target Start/End: Complemental strand, 30385 - 30346
Alignment:
Q  257 tgaaggtccaagttagcaaaagtgcacatttttatttgga 296  Q
    ||||||||||||||||||||||||||| |||| |||||||    
T  30385 tgaaggtccaagttagcaaaagtgcaccttttcatttgga 30346  T

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Target: scaffold0018; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 296
Target Start/End: Original strand, 30159 - 30196
Alignment:
Q  259 aaggtccaagttagcaaaagtgcacatttttatttgga 296  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  30159 aaggtccaagttagcaaaagtgcaccttttcatttgga 30196  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 296
Target Start/End: Original strand, 23129250 - 23129283
Alignment:
Q  263 tccaagttagcaaaagtgcacatttttatttgga 296  Q
    |||||||||||||||||||| |||||||||||||    
T  23129250 tccaagttagcaaaagtgcatatttttatttgga 23129283  T

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