View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20045_high_10 (Length: 437)
Name: NF20045_high_10
Description: NF20045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20045_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 180; Significance: 5e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 231 - 421
Target Start/End: Complemental strand, 50440083 - 50439890
Alignment:
| Q |
231 |
tatcttttaaactataaaataacaacaattaccaaaaacttaagttgtctaagcgatttctataaattttattattctaagacatttgtctaagcgcttg |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50440083 |
tatcttttaaactataaaataacaacaattaccaaaaacttaagttgtctaagcgatttctataaattttattattctaagacatttgtctaagcgcttg |
50439984 |
T |
|
| Q |
331 |
cagaagtatttgcaatagctaatgagaatagctt---atgtctttaagttggtttcatcttattgcaataatctctccagcataggttacaact |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50439983 |
cagaagtatttgcaatagctaatgagaatagcttatgatgtctttaagttggtttcatcttattgcaataatctctccagcataggttacaact |
50439890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 87 - 162
Target Start/End: Complemental strand, 50440228 - 50440153
Alignment:
| Q |
87 |
cttatcttttatgtataaaaactagatatatgaaactttctaaaaagtagttgagaggagtttctccaattaagta |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50440228 |
cttatcttttatgtataaaaactagatatatgaaactttctaaaaagtagttgagaggagtttctccaattaagta |
50440153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 169
Target Start/End: Complemental strand, 43516646 - 43516570
Alignment:
| Q |
93 |
ttttatgtataaaaactagatatatgaaactttctaaaaagtagttgagaggagtttctccaattaagtaggagacc |
169 |
Q |
| |
|
|||||||| |||||||| ||||| |||||| |||||||| ||||||||||||| || ||| |||||||||||| |
|
|
| T |
43516646 |
ttttatgtgcaaaaactaaatataaagaacttttcaaaaagtaattgagaggagtttttcaaatcaagtaggagacc |
43516570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 30563588 - 30563526
Alignment:
| Q |
87 |
cttatcttttatgtataaaaactagatatatgaaactttctaaaaagtagttgagaggagttt |
149 |
Q |
| |
|
|||||||||||||||||||| ||||||| | |||||| |||||||||||||||||||||| |
|
|
| T |
30563588 |
cttatcttttatgtataaaagttagatattaggaacttttcaaaaagtagttgagaggagttt |
30563526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University