View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20045_high_12 (Length: 403)
Name: NF20045_high_12
Description: NF20045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20045_high_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 35287612 - 35287223
Alignment:
| Q |
1 |
gttcatccgttttgttctctgctacaaaaacagaaaagtgctatattaatcatttcatagtgaaagatagaaaagtagtggacatactcttaattatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35287612 |
gttcatccgttttgttctctgctacaaaaacagaaaagtgctatattaatcatttcatagcgaaagatagaaaagtagtgcacatactcttaattatcaa |
35287513 |
T |
|
| Q |
101 |
aactaagataagtcaagaaaaggctatgagtagttcttgcaatgcaatatataaggttgtgaataattttaaactgtgatctgcaactacaattgctgcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35287512 |
aactaagataagtcaagaaaaggctatgagtagttcttgcaatgcaatagataaggttgtgaataattttaaactgtgatctgcaactacaattgctgcc |
35287413 |
T |
|
| Q |
201 |
acaatataaaggttttaaaggtcgtccaccatttccatacccctatcaagtggagtctcttgcatccctttttgtgtaatattttgtttggtcttaacct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35287412 |
acaatataaaggttttaaaggtcgtccaccatttccatactcctatcaagtggagtctcttgcatccctttttgtgtaatattttgtttggtcttaacct |
35287313 |
T |
|
| Q |
301 |
tgttctttataggccttactaatctgtagtttagccatgggatgactaaaatcggatcaaaattatttcattcaggatcgaattcgagta |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35287312 |
tgttctttataggccttactaatctgtagtttagccatgggatgactaaaatcggatcaaaattatttcattcaggatcgaattcgagta |
35287223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University