View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20045_high_13 (Length: 369)
Name: NF20045_high_13
Description: NF20045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20045_high_13 |
 | |
|
| [»] scaffold0340 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 2 - 335
Target Start/End: Complemental strand, 4939272 - 4938941
Alignment:
| Q |
2 |
aaaacgtcaatctcttaaataaatttcaaaatcatgaaggattgatctttgatttt-agttgaagatattttgnnnnnnnn--tacgtgaatgagtctat |
98 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| |
|
|
| T |
4939272 |
aaaacgtcaatctcttaaataaatttctaaatcatgaaggattgatctttgatttttagttgaagatactttcgaaaaaaaaatacgtgaatgagtctat |
4939173 |
T |
|
| Q |
99 |
acaagtatgttttggcttaactcttggtagttcaaattcaactcctaaaaatgtactataattttgtggatgatcattctataatctatgagtcaaaaca |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4939172 |
acaagtatgttttggcttaactcttggtagttcaaattgaactcctaaaaatgtactataattttgtggatgatcattctataatctatgagtcaaaaca |
4939073 |
T |
|
| Q |
199 |
gaaattatcctataatcagagattagtcaatattgttatgtcacttatgtgtgatgatcctaagttgttttagcaaactacgttagattattaattttac |
298 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4939072 |
gaaa-----atataatcagagattagtcaatattgttatgtcacttatgtgtgatgatcctaagttgttttagcaacctacgttagattattaattttac |
4938978 |
T |
|
| Q |
299 |
cataaagtaatcatcacagtacattaggtgtaaagga |
335 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4938977 |
tataaagtaatcatcacagtacgttaggtgtaaagga |
4938941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 23763713 - 23763459
Alignment:
| Q |
1 |
gaaaacgtcaatctcttaaataaatttcaaaatcatgaaggattgatctttgatttt-agttgaagatattttgnnnnnnnn--tacgtgaatgagtcta |
97 |
Q |
| |
|
||||||||||||||||| |||||||| | |||||||||| ||| ||||| |||||| ||||||| ||| |||| |||||| ||||| ||| |
|
|
| T |
23763713 |
gaaaacgtcaatctcttgaataaattcctaaatcatgaatgatgaatcttagatttttagttgaaaatactttggaaaaaaaaatacgtggatgagacta |
23763614 |
T |
|
| Q |
98 |
tacaagtatgttttggcttaactcttggtagttcaaattcaactcctaaaaatgtactataattttgtggat-gatcattctataatctatgagtcaaaa |
196 |
Q |
| |
|
|| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||| |
|
|
| T |
23763613 |
tagagacatgttttggcttaacttttggtagttcaaattcaactcctaaaaatgtactataattttgtacaccgatgattctataatctatgagtcaaaa |
23763514 |
T |
|
| Q |
197 |
cagaaattatcctataatcagagattagtcaatattgttatgtcacttatgtgtg |
251 |
Q |
| |
|
|| |||| ||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23763513 |
cataaatcatcttataatcagagattagtcaatattgttttgtcacttatgtgtg |
23763459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0340
Description:
Target: scaffold0340; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 15370 - 15650
Alignment:
| Q |
1 |
gaaaacgtcaatctcttaaataaatttcaaaatcatgaaggattgatctttgatttt-agttgaagatattttgnnnnnnnnta-cgtgaatgagtctat |
98 |
Q |
| |
|
||||||||||||||||| |||||||| | |||||||||| ||| ||||| | |||| ||||||||||| |||| | |||| ||||| |||| |
|
|
| T |
15370 |
gaaaacgtcaatctcttgaataaattcctaaatcatgaatgatgaatcttagttttttagttgaagatactttggaaaaaaaaaacgtggatgagactat |
15469 |
T |
|
| Q |
99 |
acaagtatgttttggcttaactcttggtagttcaaattcaactcctaaaaatgtactataattttgtggat-gatcattctataatctatgagtcaaaac |
197 |
Q |
| |
|
| | |||||||||||||||| ||| |||| ||||||||| ||||||||||||||||||||||||| | ||| ||||||||| |||| ||||||||| |
|
|
| T |
15470 |
agagacatgttttggcttaacttttgatagt-caaattcaattcctaaaaatgtactataattttgtacaccgatgattctataacctataagtcaaaac |
15568 |
T |
|
| Q |
198 |
agaaattatcctataatcagagattagtcaatattgttatgtcacttatgtgtgatgatcctaagttgttttagcaaactac |
279 |
Q |
| |
|
| |||| |||| ||||||||||||||| |||||||||| ||||||||||||||| | || ||||||||||||||||| |||| |
|
|
| T |
15569 |
ataaatcatccgataatcagagattagccaatattgttttgtcacttatgtgtgctcatactaagttgttttagcaacctac |
15650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University