View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20045_high_16 (Length: 338)
Name: NF20045_high_16
Description: NF20045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20045_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 28471499 - 28471817
Alignment:
| Q |
1 |
aaactaaattcttcttacttgaagaaacatccttaaacttaggcaaataagtggttttttcctggtatggtgtttccttcgctagcggcggctctattag |
100 |
Q |
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| T |
28471499 |
aaactaaattcttcttacttgaagaaacatccttaaacttaggcaaataagtggttttttcctggtatggtgtttccttcgctagcggcggctctattag |
28471598 |
T |
|
| Q |
101 |
attcatgaattgcttagcaaagttaacacttttacaatcttctggaagaacttgatgatagaacaaagagcttctgttttcactttcagtttcagatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28471599 |
attcatgaattgcttagcaaagttaacacttttacaatcttctggaagaacttgatgatagaacaaagagcttctgttttcactttcagtttcagatttt |
28471698 |
T |
|
| Q |
201 |
gattctgattttttcttgaaaacaacgaggccatgattattgacaagactaacatgaacaatagatgaatttcgcagcaacgctgaaatcggtgaagcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28471699 |
gattctgattttttcttgaaaacaacgaggccatgattattgacaagactaacatgaacaatagatgaatttcgcagcaacgctgaaatcggtgaagcat |
28471798 |
T |
|
| Q |
301 |
atcttatcatgttaatgtt |
319 |
Q |
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||||||||||||||||||| |
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| T |
28471799 |
atcttatcatgttaatgtt |
28471817 |
T |
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