View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20045_high_25 (Length: 221)
Name: NF20045_high_25
Description: NF20045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20045_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 6449578 - 6449780
Alignment:
| Q |
1 |
aaaatgagggatcaagcatgggggtacgagcataattgaaacacacaaacagccataaatgccatatgttataataattatattaattg------ttttt |
94 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6449578 |
aaaatgagggatcaagcatgggggtacgagcataattgaaacacacaaacagccataaatgccatatgttataataattatattaattgttttttttttt |
6449677 |
T |
|
| Q |
95 |
aaaacnnnnnnnttcatctccgtgcaactgttcatactaatccgttcgaagtaacttagattcatttaacgactcaagtatataacatttgtgtcctaaa |
194 |
Q |
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|||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6449678 |
aaaa----aaaattcatctccgcgcaactgtgcatactaatccgttcgaagtaacttagattcatttaacgactcaagtatataacatttgtgtcataaa |
6449773 |
T |
|
| Q |
195 |
atgttag |
201 |
Q |
| |
|
||||||| |
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|
| T |
6449774 |
atgttag |
6449780 |
T |
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