View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20045_high_4 (Length: 521)
Name: NF20045_high_4
Description: NF20045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20045_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 11 - 392
Target Start/End: Complemental strand, 11231280 - 11230899
Alignment:
| Q |
11 |
cacagacccggataccatggctagccatttattcagtgtcacattgtggtttatttggaagggttggaaccaattgatttttaacaaaacacctttctgt |
110 |
Q |
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| T |
11231280 |
cacagactcggataccatggctagccatttattcggtgttacattgtggtttatttggaagggttggaaccaattgatttttaacaaaacacctttctgg |
11231181 |
T |
|
| Q |
111 |
tgtgtccatcgctatggaggaatccagattttctgcagagttttttaacgctaatccctcaaagctgaagccaaccatagttttagagccagaaatcttg |
210 |
Q |
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| T |
11231180 |
tgtgtccatcgctatggaggaatccagattttccgcagagttttttaacgctaatccctcaaagccgaagccaaccatagtttcagagccagaaatcttg |
11231081 |
T |
|
| Q |
211 |
gagcagccgaacattggcacgacaaggatcaaagtagatgaaggatgttttcaaaatggcacaactggttacgttgcttagcacgggatcacactggttt |
310 |
Q |
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| T |
11231080 |
gagcagccgaacattggcacaacaaggatcaaagtagatgaaggatgttttcaaaatggcacaactggttaggttgcttagcacgggatcacactggttt |
11230981 |
T |
|
| Q |
311 |
gttgtaatggtgcattaaccaataatttcacattagtcttagaccaacatacaatgtatgtttgtgtgattgttgctgttat |
392 |
Q |
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| T |
11230980 |
gttgtaatggtgcattaaccaataatttcacattagtcttagaccaacatacaatgtatgtttgtgtgattgttgctgttat |
11230899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 186 - 392
Target Start/End: Complemental strand, 11243292 - 11243086
Alignment:
| Q |
186 |
catagttttagagccagaaatcttggagcagccgaacattggcacgacaaggatcaaagtagatgaaggatgttttcaaaatggcacaactggttacgtt |
285 |
Q |
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| T |
11243292 |
catagtttcagagccagaaatctgggagtagccgaacgttggcacggcagagattaacatagatgcaggatgttttcaaaatggcacaactggttaggtt |
11243193 |
T |
|
| Q |
286 |
gcttagcacgggatcacactggtttgttgtaatggtgcattaaccaataatttcacattagtcttagaccaacatacaatgtatgtttgtgtgattgttg |
385 |
Q |
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||||||||||||||||||||| |||||||||||| |||| ||||||| |||| | ||||||||| ||||||||||||||||||| |||||||||||| || |
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| T |
11243192 |
gcttagcacgggatcacactgttttgttgtaatgctgcagtaaccaaaaattccgcattagtctcagaccaacatacaatgtatctttgtgtgattggtg |
11243093 |
T |
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| Q |
386 |
ctgttat |
392 |
Q |
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||||||| |
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| T |
11243092 |
ctgttat |
11243086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 389 - 502
Target Start/End: Complemental strand, 11230490 - 11230377
Alignment:
| Q |
389 |
ttattcacgcaccaagtccaagtttcgaaccaagcatgttggaaaagcattgtccatttatttttctgataatttcaacaaaacaaggtcatgtatggat |
488 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11230490 |
ttattcacgcaccaagtccaagtttcgaaccaagcatgttggaaaagcattatccatttatttttctgataatttcaacaaaacaaggtcatgtatggat |
11230391 |
T |
|
| Q |
489 |
tcctatatccaacg |
502 |
Q |
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|||||||||||||| |
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| T |
11230390 |
tcctatatccaacg |
11230377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 280
Target Start/End: Complemental strand, 12919532 - 12919278
Alignment:
| Q |
28 |
tggctagccatttattcagtgtcacattgtggtttatttggaagggttggaaccaattgatttttaacaaaacacctttctgt--tgtgtccatcgctat |
125 |
Q |
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||||||| ||||||| |||||| ||| ||| ||| |||||||||||| |||||||||||||||| || |||||| |||||||| ||| || | || | |
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| T |
12919532 |
tggctagtcatttatccagtgttacactgtcgttgatttggaagggtcggaaccaattgattttcaataaaacaactttctgtcctgtatctactgcgaa |
12919433 |
T |
|
| Q |
126 |
ggaggaatccagattttctgcagagttttttaacgctaatccctcaaagctgaagccaaccatagttttagagccagaaatcttggagcagccgaacatt |
225 |
Q |
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||| ||||| ||||||||||| ||||||| |||||||| | ||| ||||| | || ||||| ||| | ||||| || |||||| ||||| || |
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| T |
12919432 |
ggaaatatccaatttttctgcagaattttttattgctaatccgttgaagatgaagtctgtcagagtttcagaactagaaagctgggagcaaccgaatgtt |
12919333 |
T |
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| Q |
226 |
ggcacgacaaggatcaaagtagatgaaggatgttttcaaaatggcacaactggtt |
280 |
Q |
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||||| |||| |||||| ||||||| |||||| ||||||| ||| |||||||||| |
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| T |
12919332 |
ggcacaacaaagatcaatgtagatgcaggatgctttcaaactggtacaactggtt |
12919278 |
T |
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