View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20045_high_9 (Length: 438)
Name: NF20045_high_9
Description: NF20045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20045_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 34956043 - 34956283
Alignment:
| Q |
9 |
gactgagatgaagtgtaaatattaatattaatcttgaacaatcaaattttttaaaaagataaattaatccaataattcaatgattttatttgattagatt |
108 |
Q |
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| T |
34956043 |
gacttagaagaagtgtaaatattaatattaatcttaaacaatcaaattttttaaaaagacaaattaatccactaattcaatgattttatttgattagatt |
34956142 |
T |
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| Q |
109 |
agggtaataacggaaatttggtggttattgattttcctaaattagtagtagaagtagatatgggaagactattggattctctatcacaaccggtttaaag |
208 |
Q |
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| T |
34956143 |
agggtaataacggaaatttggtggttattgattttcctaaattagtagtagaagtagatatgggaagactattggattctgtatcacaa-cggtttaaag |
34956241 |
T |
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| Q |
209 |
ttctaaattctaacccataactatttgaaaatacagatgctc |
250 |
Q |
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| T |
34956242 |
ttctaaattctaacccataactatttgaaaatacagatgctc |
34956283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 268 - 424
Target Start/End: Original strand, 34957084 - 34957240
Alignment:
| Q |
268 |
agagataatattatgaagattcatatgattaatcaacatgaagaagataggttgaatgtggatggcttctagagaaggatattacactctaaaatcaagt |
367 |
Q |
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| T |
34957084 |
agagataatattatgaagattcatatgattaatcaacatgaagaagataggttgaatgtggatggcttctagagaaggatattacactctaaaatcaagt |
34957183 |
T |
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| Q |
368 |
taccaatgatttcaaattggtagagaaatcaaacggaaggttgataagtcataagtg |
424 |
Q |
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| T |
34957184 |
taccaatgatttcaaattggtagagaaatcaaacggaaggttgataagtcataagtg |
34957240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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