View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20045_low_15 (Length: 357)
Name: NF20045_low_15
Description: NF20045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20045_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 170 - 348
Target Start/End: Complemental strand, 7622173 - 7621993
Alignment:
| Q |
170 |
tacatatccaaagcataaaactagatgtggttttgactgcatgaaatatggatccttcccaaacatcattataagaatgtatagatacaacatcaaatca |
269 |
Q |
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| T |
7622173 |
tacatatccaaagcataaaactagatgtggttttgactgcatgaaatatggatccttcccaaacatcattataagaatgtatagatacaacaccaaatca |
7622074 |
T |
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| Q |
270 |
tgacacatgaaggcgtggctac--atatgacaactcgaggctaaggataaataatagtagtattaagattgatgatctctg |
348 |
Q |
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| T |
7622073 |
tgacacatgaaggcgtggctacatatatgacaactcgaggctaaggataaataatagtagtattaagattgatgatttctg |
7621993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 7622333 - 7622220
Alignment:
| Q |
19 |
aacagccatttcaagctttgctaattctgatcctgcgcataatcttggtcctcctccaaacggtaagaaaatattactattgccagatacaccatcattg |
118 |
Q |
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| T |
7622333 |
aacagccatttcaagctttgctaattctgatcctgcgcataatcttggtcctcctccaaacggtaagaaaatattactattgccagatgcaccatcattg |
7622234 |
T |
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| Q |
119 |
ttctgcaccatcat |
132 |
Q |
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| T |
7622233 |
ttctgcaccatcat |
7622220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 33101577 - 33101636
Alignment:
| Q |
19 |
aacagccatttcaagctttgctaattctgatcctgcgcataatcttggtcctcctccaaa |
78 |
Q |
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| T |
33101577 |
aacagccatttcaagtttggctaattctaatcctgcacatagccttggtcctcctccaaa |
33101636 |
T |
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