View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20045_low_16 (Length: 356)
Name: NF20045_low_16
Description: NF20045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20045_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 9 - 340
Target Start/End: Complemental strand, 16427128 - 16426797
Alignment:
| Q |
9 |
acatcatcagaaccaaaagaagataacaaattctcaaactcatcttccataacaccttcaacatcccacaaaacaccgtccattttcacaaacgaatcat |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16427128 |
acatcatctgaaccaaaagaagataacaaattctcaaactcatcttccataacaccttcaacatcccacaaaacaccgtccattttcacaaacgaatcat |
16427029 |
T |
|
| Q |
109 |
caatcgttacactgttcctccacggcggattactaccgtttcccttcaaaaacctcccacaacaactcctcagctttacctgaaacccgtcacgtattgg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16427028 |
caatcgttacactgttcctccacggcggattactaccgtttcccttcaaaaacctcccacaacaactcctcagctttacctgaaacccgtcacgtattgg |
16426929 |
T |
|
| Q |
209 |
ttgccattcgtttttaccatctacaccgttttctaactccgttaatattaccctttttcctgttagggttaagggatacggtgtttctgttgccgttaaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16426928 |
ttgccattcgtttttaccatctacaccgttttctaactccgttaatattaccctttttcctgttagggttaagggatacggtgtttctgttgacgttaaa |
16426829 |
T |
|
| Q |
309 |
tattttccattgtggctcttcaaccttattac |
340 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |
|
|
| T |
16426828 |
tattttccgttgtggctcttcaaccttattac |
16426797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University