View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20045_low_19 (Length: 331)

Name: NF20045_low_19
Description: NF20045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20045_low_19
NF20045_low_19
[»] chr5 (2 HSPs)
chr5 (20-270)||(32800260-32800505)
chr5 (20-268)||(32797950-32798193)
[»] chr2 (8 HSPs)
chr2 (20-270)||(45338513-45338758)
chr2 (20-269)||(45336202-45336446)
chr2 (18-221)||(14662316-14662520)
chr2 (21-274)||(17648805-17649057)
chr2 (18-90)||(132783-132855)
chr2 (18-109)||(1454025-1454116)
chr2 (116-265)||(132632-132781)
chr2 (116-167)||(1453989-1454041)
[»] chr8 (2 HSPs)
chr8 (18-270)||(44734094-44734341)
chr8 (18-267)||(44731786-44732030)
[»] chr3 (10 HSPs)
chr3 (18-270)||(48023955-48024207)
chr3 (18-268)||(28784457-28784702)
chr3 (18-268)||(48707650-48707901)
chr3 (47-270)||(48025095-48025318)
chr3 (63-268)||(48027291-48027496)
chr3 (47-270)||(48024535-48024758)
chr3 (18-140)||(5354567-5354688)
chr3 (21-90)||(5913489-5913558)
chr3 (101-179)||(5907771-5907850)
chr3 (204-270)||(5907716-5907781)
[»] chr1 (2 HSPs)
chr1 (20-269)||(1550099-1550343)
chr1 (18-268)||(9535199-9535444)
[»] chr4 (13 HSPs)
chr4 (18-268)||(22804553-22804800)
chr4 (27-219)||(7230928-7231118)
chr4 (273-320)||(54295262-54295309)
chr4 (273-320)||(9569041-9569088)
chr4 (274-320)||(9593957-9594003)
chr4 (273-318)||(37895830-37895875)
chr4 (187-268)||(44640115-44640196)
chr4 (278-309)||(9574177-9574208)
chr4 (274-309)||(9582175-9582210)
chr4 (274-309)||(9587870-9587905)
chr4 (125-179)||(44640169-44640224)
chr4 (283-320)||(9602760-9602797)
chr4 (273-317)||(37897761-37897805)
[»] chr7 (3 HSPs)
chr7 (20-268)||(13111073-13111321)
chr7 (18-270)||(13108778-13109031)
chr7 (273-308)||(42446187-42446222)
[»] chr6 (12 HSPs)
chr6 (18-221)||(6723449-6723654)
chr6 (272-317)||(23218780-23218825)
chr6 (272-308)||(29131156-29131192)
chr6 (272-308)||(29152323-29152359)
chr6 (272-308)||(34281766-34281802)
chr6 (273-315)||(25528995-25529037)
chr6 (273-315)||(29299927-29299969)
chr6 (272-308)||(34278641-34278677)
chr6 (276-315)||(32960923-32960962)
chr6 (275-317)||(26090893-26090935)
chr6 (278-319)||(29012686-29012727)
chr6 (273-317)||(29145145-29145189)
[»] scaffold0613 (1 HSPs)
scaffold0613 (276-317)||(49-90)
[»] scaffold0134 (1 HSPs)
scaffold0134 (273-317)||(16410-16454)
[»] scaffold0054 (2 HSPs)
scaffold0054 (273-316)||(33653-33696)
scaffold0054 (273-316)||(40004-40047)


Alignment Details
Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 32800505 - 32800260
Alignment:
Q  20 tacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcattacctaagaaca 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||     
T  32800505 tacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactc-taaacactagtcatcattacctaagaacc 32800407  T
Q  120 ctaggcatcattacctaggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaattatgacagaaaa 219  Q
     |||  ||||||||||||||||   |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||    
T  32800406 atagatatcattacctaggact--cttacttaccaaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaattatgacagaaaa 32800309  T
Q  220 cagcaacacataattaattattaaaacagaaaaatatcaatctccaacact 270  Q
     | ||||||  |||||||||||||| |||||||||||||||||||||||||    
T  32800308 taacaacac--aattaattattaaatcagaaaaatatcaatctccaacact 32800260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 20 - 268
Target Start/End: Complemental strand, 32798193 - 32797950
Alignment:
Q  20 tacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcattacctaagaaca 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||     
T  32798193 tacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactc-taaacactagtcatcattacctaagaacc 32798095  T
Q  120 ctaggcatcattacctaggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaattatgacagaaaa 219  Q
     |||  ||||||||||||||||   |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||    
T  32798094 atagatatcattacctaggact--cttacttaccaaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaattatgacagaaaa 32797997  T
Q  220 cagcaacacataattaattattaaaacagaaaaatatcaatctccaaca 268  Q
     | ||||||  |||||||||||||| |||||||||||||||||||||||    
T  32797996 taacaacac--aattaattattaaatcagaaaaatatcaatctccaaca 32797950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 161; Significance: 8e-86; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 45338758 - 45338513
Alignment:
Q  20 tacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcattacctaagaaca 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||     
T  45338758 tacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactc-taaacactagtcatcattacctaagaacc 45338660  T
Q  120 ctaggcatcattacctaggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaattatgacagaaaa 219  Q
     |||  ||||||||||||||||   |||||||| |||||||||||||||||| |||||||||||||||||||||| ||| || |||||||||||||||||    
T  45338659 atagatatcattacctaggact--cttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaa 45338562  T
Q  220 cagcaacacataattaattattaaaacagaaaaatatcaatctccaacact 270  Q
     | ||||||  |||||||||||||| |||||||||||||||||||||||||    
T  45338561 taacaacac--aattaattattaaatcagaaaaatatcaatctccaacact 45338513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 20 - 269
Target Start/End: Complemental strand, 45336446 - 45336202
Alignment:
Q  20 tacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcattacctaagaaca 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||     
T  45336446 tacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactc-taaacactagtcatcattacctaagaacc 45336348  T
Q  120 ctaggcatcattacctaggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaattatgacagaaaa 219  Q
     |||  ||||||||||||||||   |||||||| |||||||||||||||||| ||||||||||||||||| |||| ||| || |||||||||||||||||    
T  45336347 atagatatcattacctaggact--cttacttaccaaataagcaacaatctaaatatgacacttaaacttacacaagcaacacattaattatgacagaaaa 45336250  T
Q  220 cagcaacacataattaattattaaaacagaaaaatatcaatctccaacac 269  Q
     | ||||||  |||||||||||||| ||||||||||||||||||||||||    
T  45336249 taacaacac--aattaattattaaatcagaaaaatatcaatctccaacac 45336202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 14662520 - 14662316
Alignment:
Q  18 actacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcattacctaagaa 117  Q
    |||||||||||||||||||||||||||| ||||||||||| ||| ||||||| |||||||| |||||||||||||||||||| |||| ||||||||  ||    
T  14662520 actacaaatatatagagccaagccataaacttgcttgtaaaactgaacataagatctgcacgaaatctactcttaagcactagtcattattacctagcaa 14662421  T
Q  118 cactaggcatcattaccta-ggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaattatgacaga 216  Q
    || ||| |||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||| || ||||||| ||| |||||||||||||||||    
T  14662420 caatagacatcattacctagggactgttttacttactaaataagcaacgatctaattatgacacttatacataaacaagcaacactttaattatgacaga 14662321  T
Q  217 aaaca 221  Q
    |||||    
T  14662320 aaaca 14662316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 274
Target Start/End: Complemental strand, 17649057 - 17648805
Alignment:
Q  21 acaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcattacctaagaacac 120  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||| ||| ||||| ||||||||||||||||| |     
T  17649057 acaaatatatagagccaagccataagcttgcttgtaagattgaacataaaatatgcactaaatctactc-taaacactagtcatcattacctaagaatat 17648959  T
Q  121 taggcatcattacct-aggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaattatgacag-aaa 218  Q
    ||| ||||||||||| ||||||  ||||| |||| |||||||||||||||||||||||||  | ||||||||||| ||| |   |||||||||||| |||    
T  17648958 tagacatcattacctaaggactattttacatacttaataagcaacaatctaattatgaca--ttaacttaaacaagcaacaagctaattatgacagaaaa 17648861  T
Q  219 acagcaacacataattaattattaaaacagaaaaatatcaatctccaacacttttg 274  Q
    |||||| |||| || ||||||  ||||||||||||||||||||||||||| |||||    
T  17648860 acagcagcacacaagtaattaacaaaacagaaaaatatcaatctccaacaattttg 17648805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 132855 - 132783
Alignment:
Q  18 actacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactct 90  Q
    ||||||||||||||||| |||||||||||  ||| ||||||||| || || ||||||||| ||||||||||||    
T  132855 actacaaatatatagaggcaagccataagtctgcctgtaagactgaaaatcaaatctgcaataaatctactct 132783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 1454116 - 1454025
Alignment:
Q  18 actacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaa-tctgcactaaatctactcttaagcactaatcatcatta 109  Q
    |||||||||||||||||||||||||||||||| ||||||| | | || |||||| |||||| |||||||| | |||| ||||| |||||||||    
T  1454116 actacaaatatatagagccaagccataagctttcttgtaaaattgaaaataaaactctgcagtaaatcta-ttttaaacactagtcatcatta 1454025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 265
Target Start/End: Complemental strand, 132781 - 132632
Alignment:
Q  116 aacactaggcatcattacctag-gactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaattatgaca 214  Q
    |||||||| ||||||||| ||| |||| ||||||||| |||||||||| | | ||||||||||||||||     |||||| ||| | | ||||| | |||    
T  132781 aacactagccatcattacttagtgactactttacttaataaataagcagctacctaattatgacacttacttaaaaacaagcaacaatctaatttttaca 132682  T
Q  215 gaaaacagcaacacataattaattattaaaacagaaaaatatcaatctcca 265  Q
    ||||  |||| || | || |||||| |||||||||||||| ||||||||||    
T  132681 gaaataagcagca-aaaaataattaataaaacagaaaaatctcaatctcca 132632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 1454041 - 1453989
Alignment:
Q  116 aacactaggcatcattacctagg-actgctttacttactaaataagcaacaat 167  Q
    |||||||| |||||||| ||||| ||| |||||||||||||| ||||||||||    
T  1454041 aacactagtcatcattatctagggacttctttacttactaaacaagcaacaat 1453989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 44734341 - 44734094
Alignment:
Q  18 actacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcattacctaagaa 117  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||    
T  44734341 actacaaatatatagagtcaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactc-taaacactagtcatcattacctaagaa 44734243  T
Q  118 cactaggcatcattacctaggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaattatgacagaa 217  Q
    |  ||| |||||||||||||||||   |||||||| ||||||||||||| |||| |||||||||||||||||||||| ||| || |||||||||||||||    
T  44734242 ccatagacatcattacctaggact--cttacttaccaaataagcaacaacctaactatgacacttaaacttaaacaagcaacacattaattatgacagaa 44734145  T
Q  218 aacagcaacacataattaattattaaaacagaaaaatatcaatctccaacact 270  Q
    || | ||||||  |||||||| ||||| |||||||||||||||||||||||||    
T  44734144 aataacaacac--aattaatttttaaatcagaaaaatatcaatctccaacact 44734094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 44732030 - 44731786
Alignment:
Q  18 actacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcattacctaagaa 117  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| |||||||||    
T  44732030 actacaaatatatagagtcaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactc-taaacactagtcatcatcacctaagaa 44731932  T
Q  118 cactaggcatcattacctaggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaattatgacagaa 217  Q
    |  ||  |||||||||||||||||   |||||||| |||||||||||||||||| |||||||||||||||||||||| ||| || |||||||||||||||    
T  44731931 ccatatacatcattacctaggact--cttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaa 44731834  T
Q  218 aacagcaacacataattaattattaaaacagaaaaatatcaatctccaac 267  Q
    || | ||||||  |||||||| ||||| ||||||||||||||||||||||    
T  44731833 aataacaacac--aattaatttttaaatcagaaaaatatcaatctccaac 44731786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 48023955 - 48024207
Alignment:
Q  18 actacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcattacctaagaa 117  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||      
T  48023955 actacaaatatatagagtcaagccataagcttgcttgtaagactgaacataaaatctgcactaaatctactcttaagcactagtcatcattacctaagtt 48024054  T
Q  118 cactaggcatcattacc-taggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaattatgacaga 216  Q
    || ||| |||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||| || |||||||  || |||||||||||||||||    
T  48024055 cattagacatcattaccttgggactgttttacttactaaataagcaacaatctaattatgacacttatacataaacaagtaacactttaattatgacaga 48024154  T
Q  217 aaacagcaacacataattaattattaaaacagaaaaatatcaatctccaacact 270  Q
    ||||||||  | | || ||||||  |||| ||||||||||||||||||||||||    
T  48024155 aaacagcagtaga-aaataattaacaaaagagaaaaatatcaatctccaacact 48024207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 28784702 - 28784457
Alignment:
Q  18 actacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcattacctaagaa 117  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||    
T  28784702 actacaaatatatagaatcaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactc-taaacactagtcatcattacctaagaa 28784604  T
Q  118 cactaggcatcattacctaggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaattatgacagaa 217  Q
    |  ||| |||||||||||||||||   |||||||| |||||||||||||||||| ||| |||||||||||||||||| ||| || |||||||||| ||||    
T  28784603 ccatagacatcattacctaggact--cttacttaccaaataagcaacaatctaactataacacttaaacttaaacaagcaacacattaattatgagagaa 28784506  T
Q  218 aacagcaacacataattaattattaaaacagaaaaatatcaatctccaaca 268  Q
    || | ||||||  |||||||| ||||| |||||||||||||||||||||||    
T  28784505 aataacaacac--aattaatttttaaatcagaaaaatatcaatctccaaca 28784457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 48707650 - 48707901
Alignment:
Q  18 actacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcattacctaagaa 117  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||| |||||||||||||| ||    
T  48707650 actacaaatatatagagtcaagccataagcttgcttgtaagactaaacataaaatctacactaaatctact-ttaaacactagtcatcattacctaaaaa 48707748  T
Q  118 cactaggcatcattacctaggactgctttacttactaaataagcaacaatctaattatgac------acttaaacttaaacaaacaatactttaattatg 211  Q
    |  ||| |||||||||||||||||   |||||||| |||||| ||||||||||| ||||||      |||||||||||||||| ||| || |||||||||    
T  48707749 ccatagacatcattacctaggact--cttacttaccaaataaacaacaatctaactatgacacttaaacttaaacttaaacaagcaacacattaattatg 48707846  T
Q  212 acagaaaacagcaacacataattaattattaaaacagaaaaatatcaatctccaaca 268  Q
    |||||||| | ||||||  |||||||||||||| |||||||||||||||||||||||    
T  48707847 acagaaaataacaacac--aattaattattaaatcagaaaaatatcaatctccaaca 48707901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 47 - 270
Target Start/End: Original strand, 48025095 - 48025318
Alignment:
Q  47 cttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcattacctaagaacactaggcatcattacctagg-actgctt 145  Q
    |||||||||||||   |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||| || || | || ||    
T  48025095 cttgcttgtaagaaggaacataaaatctacactaaatctactcttaagcactagtcatcattacctaagaacaatagacatcattaacttgggattgttt 48025194  T
Q  146 tacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaattatgacagaaaacagcaacacataattaattattaaaa 245  Q
    |||||||||||||||||||||||||||||||||| ||| || ||||||| ||| |||||||||||||||||||||||||  | | || ||||||  ||||    
T  48025195 tacttactaaataagcaacaatctaattatgacatttatacataaacaagcaacactttaattatgacagaaaacagcagtaga-aaataattaacaaaa 48025293  T
Q  246 cagaaaaatatcaatctccaacact 270  Q
    |||||||||||||||||||||||||    
T  48025294 cagaaaaatatcaatctccaacact 48025318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 63 - 268
Target Start/End: Original strand, 48027291 - 48027496
Alignment:
Q  63 aacataaaatctgcactaaatctactcttaagcactaatcatcattacctaagaacactaggcatcattaccta-ggactgctttacttactaaataagc 161  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| |||||| ||||||||||||||||||    
T  48027291 aacataaaatctacactaaatctactcttaagcactagtcatcattacctaagaacaatagacatcattacctagggactgttttacttactaaataagc 48027390  T
Q  162 aacaatctaattatgacacttaaacttaaacaaacaatactttaattatgacagaaaacagcaacacataattaattattaaaacagaaaaatatcaatc 261  Q
    |||||||||||||||||||||| || ||||||| ||| |||| ||||||| |||||||| |||  | | || ||||||  ||||||||||||||||||||    
T  48027391 aacaatctaattatgacacttatacataaacaagcaacacttaaattatggcagaaaacggcagta-aaaaataattaacaaaacagaaaaatatcaatc 48027489  T
Q  262 tccaaca 268  Q
    |||||||    
T  48027490 tccaaca 48027496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 47 - 270
Target Start/End: Original strand, 48024535 - 48024758
Alignment:
Q  47 cttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcattacctaagaacactaggcatcattacctagg-actgctt 145  Q
    |||||||||||||   |||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| ||  ||||||||||| || |||| ||    
T  48024535 cttgcttgtaagaaggaacataaaatctacactaaatctactattaagcactagtcatcattacctaagaacaataaacatcattaccttgggactgttt 48024634  T
Q  146 tacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaattatgacagaaaacagcaacacataattaattattaaaa 245  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||  ||| | |||||||||||||||||||||||  | | || ||||||  ||||    
T  48024635 tacttactaaataagcaacaatctaattatgacacttatacataaacatgcaacattttaattatgacagaaaacagcagtaga-aaataattaacaaaa 48024733  T
Q  246 cagaaaaatatcaatctccaacact 270  Q
    || ||||||||||||||||||||||    
T  48024734 cataaaaatatcaatctccaacact 48024758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 5354567 - 5354688
Alignment:
Q  18 actacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcattacctaagaa 117  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||    
T  5354567 actacaaatatatagagccaagccataagcttacttgtaagactaaacataaaatctgcactaaatctactc-taaacactagtcattattacctaagaa 5354665  T
Q  118 cactaggcatcattacctaggac 140  Q
    |  ||  ||||||||||||||||    
T  5354666 ccataaacatcattacctaggac 5354688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 5913558 - 5913489
Alignment:
Q  21 acaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactct 90  Q
    |||||||||||||| ||| |||||||||||||||||||| | ||||||||||||||| ||||||||||||    
T  5913558 acaaatatatagagtcaaaccataagcttgcttgtaagattgaacataaaatctgcattaaatctactct 5913489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 5907850 - 5907771
Alignment:
Q  101 tcatcattacctaagaacactaggcatcattacctag-gactgctttacttactaaataagcaacaatctaattatgaca 179  Q
    ||||||||||||||||||  ||  ||| ||||||||| ||||  || |||| ||||||||||||||||||||||||||||    
T  5907850 tcatcattacctaagaaccgtatacattattacctagagactttttcacttgctaaataagcaacaatctaattatgaca 5907771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 270
Target Start/End: Complemental strand, 5907781 - 5907716
Alignment:
Q  204 taattatgacagaaaacagcaacacataattaattattaaaacagaaaaatatcaatctccaacact 270  Q
    ||||||||||||||||   ||| ||| || ||||||||||| |||||||||||||||||||||||||    
T  5907781 taattatgacagaaaattacaa-acacaagtaattattaaaccagaaaaatatcaatctccaacact 5907716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 20 - 269
Target Start/End: Complemental strand, 1550343 - 1550099
Alignment:
Q  20 tacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcattacctaagaaca 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||     
T  1550343 tacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactc-taaacactagtcatcattacctaagaacc 1550245  T
Q  120 ctaggcatcattacctaggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaattatgacagaaaa 219  Q
     |||  ||||||||||||||||   |||||||| |||||||||||||||||| ||||||||||||||||| |||| ||| || |||||||||||| ||||    
T  1550244 atagatatcattacctaggact--cttacttaccaaataagcaacaatctaactatgacacttaaacttatacaagcaacacattaattatgacataaaa 1550147  T
Q  220 cagcaacacataattaattattaaaacagaaaaatatcaatctccaacac 269  Q
     | ||||||  |||||||||||||| ||||||||||||||||||||||||    
T  1550146 taacaacac--aattaattattaaatcagaaaaatatcaatctccaacac 1550099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 9535444 - 9535199
Alignment:
Q  18 actacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcattacctaagaa 117  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||||||||||||||    
T  9535444 actacaaatatatagagtcaagccataaacttgcttgtaagactaaacataaaatctacactaaatctactc-taaacactagtcatcattacctaagaa 9535346  T
Q  118 cactaggcatcattacctaggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaattatgacagaa 217  Q
    |  |||  ||||||||||||||||   |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| || |||||| ||||||||    
T  9535345 ccatagaaatcattacctaggact--cttacttaccaaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaattttgacagaa 9535248  T
Q  218 aacagcaacacataattaattattaaaacagaaaaatatcaatctccaaca 268  Q
    || | ||||||  |||||||||||||| |||||||||||||||||||||||    
T  9535247 aataacaacac--aattaattattaaaccagaaaaatatcaatctccaaca 9535199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 22804800 - 22804553
Alignment:
Q  18 actacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcattacctaagaa 117  Q
    |||||||||||||||||||||||||||||  || |||||||||||||||||||||||||| |||||||||||| || ||||| |||||||||||||||||    
T  22804800 actacaaatatatagagccaagccataagtctgtttgtaagactaaacataaaatctgcattaaatctactctaaa-cactagtcatcattacctaagaa 22804702  T
Q  118 cactaggcatcattacctaggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaattatgacagaa 217  Q
    |  ||| |||||||||||||||||  ||||||||| ||||||||| ||||||||||||| ||||||||||||||||| |||  | |||||||||| ||||    
T  22804701 ccatagacatcattacctaggactcttttacttaccaaataagcagcaatctaattatggcacttaaacttaaacaagcaacgcattaattatgagagaa 22804602  T
Q  218 aacagcaacacataattaattattaaaacagaaaaatatcaatctccaaca 268  Q
    || | ||||||  |||||||||||||| |||||||||||||||||||||||    
T  22804601 aataacaacac--aattaattattaaaccagaaaaatatcaatctccaaca 22804553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 27 - 219
Target Start/End: Original strand, 7230928 - 7231118
Alignment:
Q  27 atatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcattacctaagaacactaggca 126  Q
    ||||||||||||||||||| ||| |||| |||| | ||||||||||||||||||||||| ||| ||| ||||| ||||||||||||| ||||  ||| ||    
T  7230928 atatagagccaagccataaactttcttggaagattgaacataaaatctgcactaaatctgctc-taaacactagtcatcattacctaggaaccatagaca 7231026  T
Q  127 tcattaccta-ggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaattatgacagaaaa 219  Q
    |||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||  ||||||||||| ||| | | ||||||||||||||||    
T  7231027 tcattacctacggactactttacttactaaataagcagcaatctaattatgacact--aacttaaacaagcaacaatctaattatgacagaaaa 7231118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 54295309 - 54295262
Alignment:
Q  273 tggaccatgtttggtatcattttacttgagcaatgagatgttcttcat 320  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  54295309 tggaccatgtttggtatcattttacttgagcaatgagatgtttttcat 54295262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 9569041 - 9569088
Alignment:
Q  273 tggaccatgtttggtatcattttacttgagcaatgagatgttcttcat 320  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||    
T  9569041 tggaccatgtttggtatcattttacttgagcaatgagaaattcttcat 9569088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 9594003 - 9593957
Alignment:
Q  274 ggaccatgtttggtatcattttacttgagcaatgagatgttcttcat 320  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||    
T  9594003 ggaccatgtttggtatccttttacttgagcaatgaggtgttcttcat 9593957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 37895830 - 37895875
Alignment:
Q  273 tggaccatgtttggtatcattttacttgagcaatgagatgttcttc 318  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||    
T  37895830 tggaccatgtttggtatcattttacctgagcaatgaggtgttcttc 37895875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 268
Target Start/End: Complemental strand, 44640196 - 44640115
Alignment:
Q  187 ttaaacaaacaatactttaattatgacagaaaa-cagcaacacataattaattattaaaacagaaaaatatcaatctccaaca 268  Q
    ||||| |||||| | | |||||||||||||||| || ||||||| ||| | |||||||| |||||||||||||||||||||||    
T  44640196 ttaaataaacaaaaatctaattatgacagaaaaacaacaacaca-aatcatttattaaaccagaaaaatatcaatctccaaca 44640115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 309
Target Start/End: Original strand, 9574177 - 9574208
Alignment:
Q  278 catgtttggtatcattttacttgagcaatgag 309  Q
    ||||||||||||||||||||||||||||||||    
T  9574177 catgtttggtatcattttacttgagcaatgag 9574208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 309
Target Start/End: Complemental strand, 9582210 - 9582175
Alignment:
Q  274 ggaccatgtttggtatcattttacttgagcaatgag 309  Q
    ||||||||| ||||||||||||||||||||||||||    
T  9582210 ggaccatgtgtggtatcattttacttgagcaatgag 9582175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 309
Target Start/End: Complemental strand, 9587905 - 9587870
Alignment:
Q  274 ggaccatgtttggtatcattttacttgagcaatgag 309  Q
    ||||||||| ||||||||||||||||||||||||||    
T  9587905 ggaccatgtgtggtatcattttacttgagcaatgag 9587870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 44640224 - 44640169
Alignment:
Q  125 catcattacctag-gactgctttacttactaaataagcaacaatctaattatgaca 179  Q
    ||||||||||||| |||| ||||||||| ||||||| ||| |||||||||||||||    
T  44640224 catcattacctagtgactactttacttattaaataaacaaaaatctaattatgaca 44640169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 320
Target Start/End: Complemental strand, 9602797 - 9602760
Alignment:
Q  283 ttggtatcattttacttgagcaatgagatgttcttcat 320  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  9602797 ttggtatcattttacttgagcaatgaggtattcttcat 9602760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 37897761 - 37897805
Alignment:
Q  273 tggaccatgtttggtatcattttacttgagcaatgagatgttctt 317  Q
    |||||||||| |||| ||||||||||||||||||||  |||||||    
T  37897761 tggaccatgtctggtgtcattttacttgagcaatgatgtgttctt 37897805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 20 - 268
Target Start/End: Original strand, 13111073 - 13111321
Alignment:
Q  20 tacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcattacctaagaaca 119  Q
    ||||||||||| |||||||||||||||||||||||||||| | | |||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  13111073 tacaaatatattgagccaagccataagcttgcttgtaagagtgagcataaaatttgcactaaatctactcttaagcactagtcatcattacctaagaaca 13111172  T
Q  120 ctaggcatcattaccta-ggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaattatgacagaaa 218  Q
     ||| ||| |||||||| |||||  ||||||||||||||||||||||||||||||||| |||||  || ||||||| ||| |||||||||||||||||||    
T  13111173 atagacattattacctagggactattttacttactaaataagcaacaatctaattatggcacttctacataaacaagcaacactttaattatgacagaaa 13111272  T
Q  219 acagcaacacataattaattattaaaacagaaaaatatcaatctccaaca 268  Q
    ||||||  | | || ||||||  |||||||||||||||||||||||||||    
T  13111273 acagcagta-aaaagtaattaacaaaacagaaaaatatcaatctccaaca 13111321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 13108778 - 13109031
Alignment:
Q  18 actacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcattacctaagaa 117  Q
    ||||||||||||| ||| ||||||||||| |||||||||||||| || ||||||| ||  |||||||||||||||||||||| ||||||||||| |||||    
T  13108778 actacaaatatatggagtcaagccataagtttgcttgtaagactgaatataaaatatgttctaaatctactcttaagcactagtcatcattacccaagaa 13108877  T
Q  118 cactaggcatcattaccta-ggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaattatgacaga 216  Q
    || || | ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |  ||||||| ||| |||||||||||||||||    
T  13108878 caatatgtatcattacctagggactgttttacttactaaataagcaacaatctaattatgacacttataaataaacaagcaacactttaattatgacaga 13108977  T
Q  217 aaacagcaacacataattaattattaaaac-agaaaaatatcaatctccaacact 270  Q
    ||||| |||   | || ||||||  ||||| | ||||||||||||||||||||||    
T  13108978 aaacaacaatgga-aaataattaacaaaacaaaaaaaatatcaatctccaacact 13109031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 273 - 308
Target Start/End: Original strand, 42446187 - 42446222
Alignment:
Q  273 tggaccatgtttggtatcattttacttgagcaatga 308  Q
    |||||||||||||||||||||| |||||||||||||    
T  42446187 tggaccatgtttggtatcatttgacttgagcaatga 42446222  T

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Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 6723654 - 6723449
Alignment:
Q  18 actacaaatatatagagccaagccataagcttgcttgtaagactaaacata--aaatctgcactaaatctactcttaagcactaatcatcattacctaag 115  Q
    |||| ||||||||||||||||| |||||| ||| |||||||||| ||||||  |||| || | |||||||||||| || ||| | |||||||||||||||    
T  6723654 actataaatatatagagccaagtcataagtttgtttgtaagactcaacatataaaatttgtattaaatctactctaaa-cacgagtcatcattacctaag 6723556  T
Q  116 aacactaggcatcattacctagg-actgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaattatgaca 214  Q
    |||| ||  ||| || ||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||    
T  6723555 aacaataaacattatcacctagggactgttttacttactaaataagcaacaatctaattatgacacttacacttaaacaagcaacactttaattatgaca 6723456  T
Q  215 gaaaaca 221  Q
    |||||||    
T  6723455 gaaaaca 6723449  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 23218825 - 23218780
Alignment:
Q  272 ttggaccatgtttggtatcattttacttgagcaatgagatgttctt 317  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||    
T  23218825 ttggaccatgtttggtgtcattttacttgagcaatgaggtgttctt 23218780  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 272 - 308
Target Start/End: Original strand, 29131156 - 29131192
Alignment:
Q  272 ttggaccatgtttggtatcattttacttgagcaatga 308  Q
    |||||||||||||||||||||||||||||||||||||    
T  29131156 ttggaccatgtttggtatcattttacttgagcaatga 29131192  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 29152359 - 29152323
Alignment:
Q  272 ttggaccatgtttggtatcattttacttgagcaatga 308  Q
    |||||||||||||||||||||||||||||||||||||    
T  29152359 ttggaccatgtttggtatcattttacttgagcaatga 29152323  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 272 - 308
Target Start/End: Original strand, 34281766 - 34281802
Alignment:
Q  272 ttggaccatgtttggtatcattttacttgagcaatga 308  Q
    |||||||||||||||||||||||||||||||||||||    
T  34281766 ttggaccatgtttggtatcattttacttgagcaatga 34281802  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 25529037 - 25528995
Alignment:
Q  273 tggaccatgtttggtatcattttacttgagcaatgagatgttc 315  Q
    |||||||||||||||||||||| |||||||||||||| |||||    
T  25529037 tggaccatgtttggtatcatttaacttgagcaatgaggtgttc 25528995  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 29299927 - 29299969
Alignment:
Q  273 tggaccatgtttggtatcattttacttgagcaatgagatgttc 315  Q
    ||||||||||||||| ||||||||||||||||||||| |||||    
T  29299927 tggaccatgtttggtgtcattttacttgagcaatgaggtgttc 29299969  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 34278677 - 34278641
Alignment:
Q  272 ttggaccatgtttggtatcattttacttgagcaatga 308  Q
    ||||||| |||||||||||||||||||||||||||||    
T  34278677 ttggaccttgtttggtatcattttacttgagcaatga 34278641  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 32960962 - 32960923
Alignment:
Q  276 accatgtttggtatcattttacttgagcaatgagatgttc 315  Q
    ||||||||||||||||||||| |||||||||||| |||||    
T  32960962 accatgtttggtatcattttatttgagcaatgaggtgttc 32960923  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 317
Target Start/End: Complemental strand, 26090935 - 26090893
Alignment:
Q  275 gaccatgtttggtatcattttacttgagcaatgagatgttctt 317  Q
    |||||||| ||||||||||| |||||||||||||| |||||||    
T  26090935 gaccatgtctggtatcatttaacttgagcaatgaggtgttctt 26090893  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 319
Target Start/End: Original strand, 29012686 - 29012727
Alignment:
Q  278 catgtttggtatcattttacttgagcaatgagatgttcttca 319  Q
    |||||||||||||||||||||| |||||||||  ||||||||    
T  29012686 catgtttggtatcattttactttagcaatgaggggttcttca 29012727  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 29145145 - 29145189
Alignment:
Q  273 tggaccatgtttggtatcattttacttgagcaatgagatgttctt 317  Q
    ||||||||||||||| |||||||||||||| | |||| |||||||    
T  29145145 tggaccatgtttggtgtcattttacttgagtagtgaggtgttctt 29145189  T

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Target: scaffold0613 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 49 - 90
Alignment:
Q  276 accatgtttggtatcattttacttgagcaatgagatgttctt 317  Q
    |||||||||||| ||||||||||||||||||||| |||||||    
T  49 accatgtttggtgtcattttacttgagcaatgaggtgttctt 90  T

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Target: scaffold0134 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 16454 - 16410
Alignment:
Q  273 tggaccatgtttggtatcattttacttgagcaatgagatgttctt 317  Q
    |||| |||||||||| ||||||||||||||||||||| |||||||    
T  16454 tggagcatgtttggtgtcattttacttgagcaatgaggtgttctt 16410  T

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Target: scaffold0054 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 273 - 316
Target Start/End: Complemental strand, 33696 - 33653
Alignment:
Q  273 tggaccatgtttggtatcattttacttgagcaatgagatgttct 316  Q
    |||||||||||| ||||||||||||||||| |||||| ||||||    
T  33696 tggaccatgtttagtatcattttacttgagaaatgaggtgttct 33653  T

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Target: scaffold0054; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 273 - 316
Target Start/End: Complemental strand, 40047 - 40004
Alignment:
Q  273 tggaccatgtttggtatcattttacttgagcaatgagatgttct 316  Q
    |||||||||||| ||||||||||||||||| |||||| ||||||    
T  40047 tggaccatgtttagtatcattttacttgagaaatgaggtgttct 40004  T

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