View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20045_low_2 (Length: 672)
Name: NF20045_low_2
Description: NF20045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20045_low_2 |
 | |
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| [»] scaffold0006 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 523; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 18 - 657
Target Start/End: Complemental strand, 13408051 - 13407412
Alignment:
| Q |
18 |
atcaattaaaactacttgaaattaatcatataaataaatgacactttccaaattgtgaaagtcaatacctactcaaaataatattcaaacttagaatcaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13408051 |
atcaattaaaactacttgaaattaatcatataaataaatgacactttccaaattgtgaaagtcaatacctactcaaaataatattcaaacttagaatcaa |
13407952 |
T |
|
| Q |
118 |
tgacttaaaataatatccaaacatagaatttttcaactcatagatactgatggttacttataagttataactattgaggaagtgtgttcatcnnnnnnnn |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13407951 |
tgacttaaaataatatccaaacatagaatttttcaactcatagatactgatggttacttataagttataactattgaggaagtgtgttcatctatatcta |
13407852 |
T |
|
| Q |
218 |
nnnnnnnnnnnnnnngacgagaataaaaactagagaaagtgcaatactcaaagttaagatgagttccaactccaaacaaactcagtttcccatagaggta |
317 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13407851 |
tatctatatatatatgacgagaataaaaactagagaaagtgcaatactcaaagttaagatgagttccaactccaaacaaactcagtttcccatagaggta |
13407752 |
T |
|
| Q |
318 |
gaaaaagttgatgatgcttatctttctgcattgttactatgttttagtaggatttttcctgcaatactaaatgctgctattgatctcaatttatttgaaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
13407751 |
gaaaaagttgatgatgcttatctttctgcattgttactatgttttagtagaatttttcctgcaatactaaatgctgctattgatctcaatttatttgata |
13407652 |
T |
|
| Q |
418 |
tcatagctaagttacaaaattcaagtgaacattctagtttttctgcttctgaaattgcttctcagcttccaaatcaacatcatgaattggctgagaggct |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||| |
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| T |
13407651 |
tcatagctaagttacaaaattcaagtgaacattctagtttttctgcttctgaaattgcttctgagcttccaaatcaacaccctgaattggctgagaggct |
13407552 |
T |
|
| Q |
518 |
tgaacgtatgttgactgtattggctagttactctcttcttacttgttccattcgtaccaatgaaaatggtaagagagaaagagtttatgctctctcatca |
617 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||| ||||||| | ||||||||||||||||||||||||| |
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| T |
13407551 |
tgaacgtatgttgactgtgttggctagttactctcttctcacttgttccattcgtatcaatgaagatggtaacaaagaaagagtttatgctctctcatca |
13407452 |
T |
|
| Q |
618 |
attggtcaatactttgcattggataaagatggaggttctt |
657 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
13407451 |
attggtcaatactttgcattggataaagatggaggctctt |
13407412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 312 - 657
Target Start/End: Complemental strand, 13396148 - 13395803
Alignment:
| Q |
312 |
gaggtagaaaaagttgatgatgcttatctttctgcattgttactatgttttagtaggatttttcctgcaatactaaatgctgctattgatctcaatttat |
411 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13396148 |
gaggtagaaaaagttgatgatgcttatctttcagcattgttactatgttttagtagaatttttcctgcaatattaaatgctgctattgatctcaatttat |
13396049 |
T |
|
| Q |
412 |
ttgaaatcatagctaagttacaaaattcaagtgaacattctagtttttctgcttctgaaattgcttctcagcttccaaatcaacatcatgaattggctga |
511 |
Q |
| |
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|||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13396048 |
ttgatatcatagctaagttacaaagttcaaatgaacattctagtttttctgcttctgaaattgcttctcagcttccaaatcaacatcatgaattggctga |
13395949 |
T |
|
| Q |
512 |
gaggcttgaacgtatgttgactgtattggctagttactctcttcttacttgttccattcgtaccaatgaaaatggtaagagagaaagagtttatgctctc |
611 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13395948 |
gaggcttgaacgtatgttgactgtattggctagttactctcttcttacttgttccattcgtaccaatgaaaatggtaagagagaaagagtttatgctctc |
13395849 |
T |
|
| Q |
612 |
tcatcaattggtcaatactttgcattggataaagatggaggttctt |
657 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13395848 |
tcatcaattggtcaatactttgcattggataaagatggaggttctt |
13395803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 234 - 657
Target Start/End: Original strand, 19173905 - 19174330
Alignment:
| Q |
234 |
acgagaataaaaactagagaaagtgcaatactcaaagttaagatgagttccaactccaaacaaactcagtttcccatagaggtagaaaaagttgatgatg |
333 |
Q |
| |
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||||||| |||||||||||||| ||| ||||| |||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||| |
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| T |
19173905 |
acgagaaccaaaactagagaaag--caaaactcatagttaagatgagttccaactccaaacaatctcagtttcccacagaggttgaaaaagttgatgatg |
19174002 |
T |
|
| Q |
334 |
c----ttatctttctgcattgttactatgttttagtaggatttttcctgcaatactaaatgctgctattgatctcaatttatttgaaatcatagctaagt |
429 |
Q |
| |
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| ||||| ||||| |||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
19174003 |
catatatatctctctgcgttgttattatgttttagtaggatttttcctgcaatattaaatgctcctattgatctcaatttatttgatatcatagctaagt |
19174102 |
T |
|
| Q |
430 |
tacaaaattcaagtgaacattctagtttttctgcttctgaaattgcttctcagcttccaaatcaacatcatgaattggctgagaggcttgaacgtatgtt |
529 |
Q |
| |
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|||||| |||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
19174103 |
tacaaagttcaagtgaatattctaccttttctgcttctgaaattgcttctgagcttccaaatcaacaccctgaattggctgagaggcttgaacgtatgtt |
19174202 |
T |
|
| Q |
530 |
gactgtattggctagttactctcttcttacttgttccattcgtaccaatgaaaatggtaagagagaaagagtttatgctctctcatcaattggtcaatac |
629 |
Q |
| |
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|||||| |||||||||||||||||||| |||||||||||||||| ||||||| ||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
19174203 |
gactgtgttggctagttactctcttctcacttgttccattcgtagcaatgaagatggtaacaaagaaagagtttatgctctctcatcaattggtcaatac |
19174302 |
T |
|
| Q |
630 |
tttgcattggataaagatggaggttctt |
657 |
Q |
| |
|
||||||||||||||||||||||| |||| |
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| T |
19174303 |
tttgcattggataaagatggaggctctt |
19174330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 312 - 657
Target Start/End: Complemental strand, 13385194 - 13384849
Alignment:
| Q |
312 |
gaggtagaaaaagttgatgatgcttatctttctgcattgttactatgttttagtaggatttttcctgcaatactaaatgctgctattgatctcaatttat |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
13385194 |
gaggtagaaaaagttgatgatgcttatctttctgcattgttattatgttttagtagggtttttcctgctatactaaatgctgctgttgatctcaatttat |
13385095 |
T |
|
| Q |
412 |
ttgaaatcatagctaagttacaaaattcaagtgaacattctagtttttctgcttctgaaattgcttctcagcttccaaatcaacatcatgaattggctga |
511 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||| | |||||||||||| |
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| T |
13385094 |
ttgaaatcatagctaagttacaaaattcaaatgaacattctagtttttctgcttatgaaattgcttctgagcttccaaatcaacaccctgaattggctga |
13384995 |
T |
|
| Q |
512 |
gaggcttgaacgtatgttgactgtattggctagttactctcttcttacttgttccattcgtaccaatgaaaatggtaagagagaaagagtttatgctctc |
611 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
13384994 |
gaggcttgaacgtatgttgactgtgttggctagttactctcttctcacttgttccattcgtaccaatgaagatggtaagagagaaagagtttatgctctc |
13384895 |
T |
|
| Q |
612 |
tcatcaattggtcaatactttgcattggataaagatggaggttctt |
657 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||| |||| |
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| T |
13384894 |
tcatcaattggtcaatactttgcatgtgatagtgatggaggctctt |
13384849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 51 - 142
Target Start/End: Original strand, 19173774 - 19173868
Alignment:
| Q |
51 |
ataaatgacactttccaaattgtgaaagtcaatacctactcaaaataatattcaaacttagaatcaa-tgactt--aaaataatatccaaacata |
142 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
19173774 |
ataaatgacactttccaatttgtgaaagtcaatacctgctccaaataatattcaaacttagaatcaattgacttaaaaaataatatccaaacata |
19173868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 357 - 427
Target Start/End: Complemental strand, 13698509 - 13698439
Alignment:
| Q |
357 |
tgttttagtaggatttttcctgcaatactaaatgctgctattgatctcaatttatttgaaatcatagctaa |
427 |
Q |
| |
|
||||||||| | |||||||||||||| ||||||||| |||||||||||||||| ||||| |||| |||||| |
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|
| T |
13698509 |
tgttttagtcgaatttttcctgcaattctaaatgctactattgatctcaatttgtttgatatcaaagctaa |
13698439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 385 - 428
Target Start/End: Original strand, 43364362 - 43364405
Alignment:
| Q |
385 |
taaatgctgctattgatctcaatttatttgaaatcatagctaag |
428 |
Q |
| |
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|||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
43364362 |
taaatgctgctattgaactcaatttatttgagatcatagctaag |
43364405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 437 - 488
Target Start/End: Complemental strand, 70170 - 70119
Alignment:
| Q |
437 |
ttcaagtgaacattctagtttttctgcttctgaaattgcttctcagcttcca |
488 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||| | |||||||| |
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|
| T |
70170 |
ttcaagtgaatattctagcttttctgcttctgaaattgcttgtgagcttcca |
70119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 642
Target Start/End: Complemental strand, 70117 - 70086
Alignment:
| Q |
611 |
ctcatcaattggtcaatactttgcattggata |
642 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
70117 |
ctcatcaattggtcaatactttgcattggata |
70086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 370 - 426
Target Start/End: Complemental strand, 20721270 - 20721214
Alignment:
| Q |
370 |
tttttcctgcaatactaaatgctgctattgatctcaatttatttgaaatcatagcta |
426 |
Q |
| |
|
||||||||||||| || |||||||| ||||| ||||| |||||||| ||||| |||| |
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|
| T |
20721270 |
tttttcctgcaattcttaatgctgcaattgagctcaaattatttgatatcattgcta |
20721214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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