View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20045_low_20 (Length: 296)
Name: NF20045_low_20
Description: NF20045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20045_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 281
Target Start/End: Complemental strand, 2680732 - 2680462
Alignment:
| Q |
9 |
gaataatatgatagatgannnnnnnnaagtatataccaagtcctttttccatggagtactatcctttttcctttcatatataatagattttgtttatnnn |
108 |
Q |
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| T |
2680732 |
gaataatatgatagatgattttttttaagtatatac-aagtcctttttccatggagtactatcctttttcctttcatatataatagattttgtttgtaaa |
2680634 |
T |
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| Q |
109 |
nnnnncatatatggacaattccttgacccccttttgaagtttggcctacgttatgttaatgttttagttttgtgagttcaaataaaatggggtccatggc |
208 |
Q |
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| T |
2680633 |
aaaa-catatatggacaattccttcacccccttttgaagtttggcctacgttatgttaatgttttagttttgtgagttcaaataaaatggggtccatggc |
2680535 |
T |
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| Q |
209 |
tttgttagttatgtattgcttcacatgctatttcaaatcaaaccatgatactctccaatgggaaggaagctcc |
281 |
Q |
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| T |
2680534 |
tttgttagttatgtattgcttcacatgctatttcaaatcaaaccatgatactctccaatgggaaggaagctcc |
2680462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 120 - 281
Target Start/End: Complemental strand, 2685863 - 2685703
Alignment:
| Q |
120 |
tggacaattccttgacccccttttgaagtttggcctacgttatgttaatgttttagttttgtgagttcaaataaaatggggtccatggctttgttagtta |
219 |
Q |
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|||||||||| |||||| | |||||||||||||| | |||||||||| |||| | |||||| | ||||| ||||| |||||||| ||||||||| | |
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| T |
2685863 |
tggacaattctttgacctctttttgaagtttggcttgtgttatgttaaagtttaa-ttttgtcaattcaagtaaaacatggtccatgtctttgttagctt |
2685765 |
T |
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| Q |
220 |
tgtattgcttcacatgctatttcaaatcaaaccatgatactctccaatgggaaggaagctcc |
281 |
Q |
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| T |
2685764 |
ggtattgcttcacgtgccatttcaaatcaaaccatggtactctccaatgggaaggaagctcc |
2685703 |
T |
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