View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20045_low_3 (Length: 586)
Name: NF20045_low_3
Description: NF20045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20045_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 291 - 571
Target Start/End: Complemental strand, 41992002 - 41991722
Alignment:
| Q |
291 |
tctcggcataattcacctcaagaatgttaccacaaacagcaccagcaatcgatttcgctgcagaaagattctctccagcaattatagtcaaattagtaat |
390 |
Q |
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| T |
41992002 |
tctcggcataattcacctcaagaatgttaccacaaacagcaccagcaatcgatttcgccgcagaaagattctctccagcaattatagtcaaattagtaat |
41991903 |
T |
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| Q |
391 |
tatcggtttcgagttaaaagtaagctcggcaagagcagccttatactgagtcaccagctcttgatgcggcggtggttgcgggtggtaaccaccgccacca |
490 |
Q |
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| T |
41991902 |
tatcggtttcgagttaaaagtaagctcggcaagagcagccttatactgagtcaccagctcttgatgcggcggtggttgcgggtggtaaccaccgccacca |
41991803 |
T |
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| Q |
491 |
tcactactttcagagtctctatcgttcattcgaaacctaccagacgacaacatcgtagcaaccccagaggtaggttgttgt |
571 |
Q |
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| T |
41991802 |
tcactactttcagagtctctatcgttcattcgaaacctaccagacgacaacatcgtagcaaccccagaggtaggttgttgt |
41991722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 48 - 190
Target Start/End: Complemental strand, 41992244 - 41992103
Alignment:
| Q |
48 |
taccaacaactataaaatggatgaatcacaaacaccttctttttctaactaacattcaccatttttccatgataaaacctctacccgaaaacaacactaa |
147 |
Q |
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| T |
41992244 |
taccaacaactataaaatggatgaatcacaaacgccttctttt-ctaactaacattcaccatttttccatgataaaacctctacccgaaaacaacactaa |
41992146 |
T |
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| Q |
148 |
cccaatttatcaatagcacaagcatataatataatcacatcag |
190 |
Q |
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| T |
41992145 |
cccaatttatcaataacacaagcatataatataatcacatcag |
41992103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 357 - 447
Target Start/End: Original strand, 26672253 - 26672343
Alignment:
| Q |
357 |
gattctctccagcaattatagtcaaattagtaattatcggtttcgagttaaaagtaagctcggcaagagcagccttatactgagtcaccag |
447 |
Q |
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||||||| || |||||||||||||| || ||||| ||||| ||||| || ||||||||||| ||||| ||| ||||||||||| |||||| |
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| T |
26672253 |
gattctcccctgcaattatagtcaagttggtaatcatcggcttcgaattgaaagtaagctctgcaagtgcactcttatactgagccaccag |
26672343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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