View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20045_low_4 (Length: 531)

Name: NF20045_low_4
Description: NF20045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20045_low_4
NF20045_low_4
[»] chr6 (4 HSPs)
chr6 (150-501)||(504957-505309)
chr6 (64-128)||(505372-505436)
chr6 (449-504)||(504613-504668)
chr6 (437-469)||(7736972-7737004)
[»] chr4 (2 HSPs)
chr4 (380-501)||(48297905-48298023)
chr4 (134-271)||(48297549-48297683)
[»] chr1 (3 HSPs)
chr1 (380-504)||(12576103-12576224)
chr1 (189-371)||(38191348-38191522)
chr1 (152-273)||(12576683-12576801)
[»] chr2 (5 HSPs)
chr2 (133-227)||(19999024-19999118)
chr2 (422-509)||(20027944-20028030)
chr2 (444-510)||(20017703-20017768)
chr2 (135-256)||(20017328-20017445)
chr2 (422-459)||(12307473-12307510)
[»] chr3 (1 HSPs)
chr3 (422-460)||(8791032-8791070)


Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 150 - 501
Target Start/End: Complemental strand, 505309 - 504957
Alignment:
Q  150 agtagatctgcaattgcttttgctccatacatctcaatcagctctttctgttccaccaacaaatcacactcaaattagtaccaaccttaatggaaaagag 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  505309 agtagatctgcaattgcttttgctccatacatctcaatcagctctttctgttccaccaacaaatcacactcaaattagtaccaaccttaatggaaaagag 505210  T
Q  250 agcattgtgaaacacaatacaataatcataaattcgttattaacttctttataaagtaacgtcaaaa-gttttgaataaatagtaattttcatctaagaa 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  505209 agcattgtgaaacacaatacaataatcataaattcgttattaacttctttataaagtaacgtcaaaaagctttgaataaatagtaattttcatctaagaa 505110  T
Q  349 attgagcttggctaccttcatgtatatcactattgtttctcatgcaaatattagaagaagaaaaaagacattattgtaattaaaagtgaaaatagaaaat 448  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  505109 attgagcttggctaccttcatgtatatcactatagtttctcatgcaaatattagaagaagaaaaaagacattattgtaattaaaagtgaaaatagaaaat 505010  T
Q  449 attttctcaaaccaaacaagtatttttagttgaatgaatgatataaaaatgaa 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  505009 attttctcaaaccaaacaagtatttttagttgaatgaatgatataaaaatgaa 504957  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 505436 - 505372
Alignment:
Q  64 ctcaaatcacaccacccatcacttataaattggttttgcaaaaatgaattaaactaaacttaaaa 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  505436 ctcaaatcacaccacccatcacttataaattggttttgcaaaaatgaattaaactaaacttaaaa 505372  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 449 - 504
Target Start/End: Complemental strand, 504668 - 504613
Alignment:
Q  449 attttctcaaaccaaacaagtatttttagttgaatgaatgatataaaaatgaacaa 504  Q
    |||||||||||||||||||  |||  ||||||||||||||||||||||||||||||    
T  504668 attttctcaaaccaaacaaacattcctagttgaatgaatgatataaaaatgaacaa 504613  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 469
Target Start/End: Original strand, 7736972 - 7737004
Alignment:
Q  437 aaaatagaaaatattttctcaaaccaaacaagt 469  Q
    |||||||||||| ||||||||||||||||||||    
T  7736972 aaaatagaaaatgttttctcaaaccaaacaagt 7737004  T

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Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 380 - 501
Target Start/End: Original strand, 48297905 - 48298023
Alignment:
Q  380 attgtttctcatgcaaatattagaagaagaaaaaagacattattgtaattaaaagtgaaaatagaaaatattttctcaaaccaaacaagtatttttagtt 479  Q
    ||||||||| || |||||||||||| ||||| |  |||| | ||||||| |||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  48297905 attgtttcttatacaaatattagaa-aagaagat-gacaattttgtaataaaaagtgaaaatagaaaatattttcttaaaccaaacaagta-ctttagtt 48298001  T
Q  480 gaatgaatgatataaaaatgaa 501  Q
    ||||||||||||||||| ||||    
T  48298002 gaatgaatgatataaaattgaa 48298023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 134 - 271
Target Start/End: Original strand, 48297549 - 48297683
Alignment:
Q  134 agtaggcttcatggccagtagatctgcaattgcttttgctccatacatctcaatcagctctttctgttccaccaacaaatcacactcaaattagtaccaa 233  Q
    |||||||||||||  || |||||||||||||  || || |||||||  || ||| ||||||| ||||||||||| ||||||||||||||||||| | |||    
T  48297549 agtaggcttcatgaacaatagatctgcaattaattctggtccatactccttaattagctcttcctgttccaccaccaaatcacactcaaattagcagcaa 48297648  T
Q  234 ccttaatggaaaagagagcattgtgaaacacaatacaa 271  Q
     ||   ||||||||||||||||| ||||||||| ||||    
T  48297649 tct---tggaaaagagagcattgagaaacacaacacaa 48297683  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 380 - 504
Target Start/End: Complemental strand, 12576224 - 12576103
Alignment:
Q  380 attgtttctcatgcaaatattagaagaagaaaaaagacattattgtaattaaaagtgaaaatagaaaatattttctcaaaccaaacaagtatttttagtt 479  Q
    ||||||||||||||||||||||||| |   || | | |||| || |||| ||||| ||||| ||||||||||||||||| | |||||||||| || ||||    
T  12576224 attgtttctcatgcaaatattagaaaac--aagatggcatttttctaatgaaaagcgaaaacagaaaatattttctcaaccaaaacaagtatctt-agtt 12576128  T
Q  480 gaatgaatgatataaaaatgaacaa 504  Q
    ||||||||||||||||| |||||||    
T  12576127 gaatgaatgatataaaactgaacaa 12576103  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 189 - 371
Target Start/End: Original strand, 38191348 - 38191522
Alignment:
Q  189 agctctttctgttccac--caacaaatcacactcaaattagtaccaaccttaatggaaaagagagcattgtgaaacacaatacaataatcataaattcgt 286  Q
    ||||||| |||||||||  || |||||||||||||| |||||| |||||||   |||||||| ||||||| ||||||| ||||||||||||||           
T  38191348 agctcttcctgttccacaccaccaaatcacactcaatttagtagcaacctt---ggaaaagaaagcattgagaaacacgatacaataatcata------- 38191437  T
Q  287 tattaacttctttataaagtaacgtcaaaagttttgaataaat-agtaattttcatctaagaaattgagcttggctaccttcatgt 371  Q
     ||||||||||||| |||  ||| |||| || ||||||||| | | ||||| |||||||||||| ||| ||||| |||||||||||    
T  38191438 -attaacttctttacaaaccaacatcaagagctttgaataagtaaataattgtcatctaagaaaatgaacttggttaccttcatgt 38191522  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 152 - 273
Target Start/End: Complemental strand, 12576801 - 12576683
Alignment:
Q  152 tagatctgcaattgcttttgctccatacatctcaatcagctctttctgttccaccaacaaatcacactcaaattagtaccaaccttaatggaaaagagag 251  Q
    |||||||||||||| || || ||||||| ||| ||  ||||||| |||||| |||| ||||||||||||||||||||| |||   || | ||||| ||||    
T  12576801 tagatctgcaattgattctggtccatacttcttaactagctcttcctgttctaccaccaaatcacactcaaattagtagcaa---tatttgaaaatagag 12576705  T
Q  252 cattgtgaaacacaatacaata 273  Q
    ||||| ||| ||||||||||||    
T  12576704 cattgagaaccacaatacaata 12576683  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 227
Target Start/End: Original strand, 19999024 - 19999118
Alignment:
Q  133 aagtaggcttcatggccagtagatctgcaattgcttttgctccatacatctcaatcagctctttctgttccaccaacaaatcacactcaaattag 227  Q
    ||||||||||||||  || |||||||||||||| || || |||| |||||  ||  ||||||| |||||||||||||||||||||||||||||||    
T  19999024 aagtaggcttcatgtgcaatagatctgcaattgattctggtccaaacatcctaactagctcttcctgttccaccaacaaatcacactcaaattag 19999118  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 422 - 509
Target Start/End: Original strand, 20027944 - 20028030
Alignment:
Q  422 ttgtaattaaaagtgaaaatagaaaatattttctcaaaccaaacaagtatttttagttgaatgaatgatataaaaatgaacaagtaag 509  Q
    |||||||||| |||||||| |||||||||||||||||| ||||||| || | |||||| ||||||||||||| || ||||||| ||||    
T  20027944 ttgtaattaatagtgaaaacagaaaatattttctcaaatcaaacaatta-tcttagtttaatgaatgatatataattgaacaaataag 20028030  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 510
Target Start/End: Original strand, 20017703 - 20017768
Alignment:
Q  444 aaaatattttctcaaaccaaacaagtatttttagttgaatgaatgatataaaaatgaacaagtaagt 510  Q
    |||||||||||||||| |||||||||| | ||| || |||||||||||||||| ||||||| |||||    
T  20017703 aaaatattttctcaaatcaaacaagta-tcttaatttaatgaatgatataaaattgaacaaataagt 20017768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 256
Target Start/End: Original strand, 20017328 - 20017445
Alignment:
Q  135 gtaggcttcatggccagtagatctgcaattgcttttgctccatacatctcaatcagctctttctgttccaccaacaaatcacactcaaattagtaccaac 234  Q
    ||||||||||||  ||  ||||||||||||| || || ||||||||||  ||  ||||||| |||| ||||||  |||||||||||||||||||| |||     
T  20017328 gtaggcttcatgtgcaagagatctgcaattgattctggtccatacatcctaactagctcttcctgt-ccaccacaaaatcacactcaaattagtagcaa- 20017425  T
Q  235 cttaatggaaaagagagcattg 256  Q
      || ||||||| |||||||||    
T  20017426 --tattggaaaatagagcattg 20017445  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 459
Target Start/End: Original strand, 12307473 - 12307510
Alignment:
Q  422 ttgtaattaaaagtgaaaatagaaaatattttctcaaa 459  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  12307473 ttgtaataaaaagtgaaaatagaaaataatttctcaaa 12307510  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 460
Target Start/End: Original strand, 8791032 - 8791070
Alignment:
Q  422 ttgtaattaaaagtgaaaatagaaaatattttctcaaac 460  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  8791032 ttgtaattaaaagtgaaaagagaaaatattttttcaaac 8791070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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