View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20045_low_6 (Length: 506)
Name: NF20045_low_6
Description: NF20045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20045_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 40078821 - 40078541
Alignment:
| Q |
16 |
attaaaggattggtttattcacttgtctattcatcacttttttcacttgttgttttgcctttactagattaaaaaatataattggtttgtgaaagaaagt |
115 |
Q |
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| T |
40078821 |
attaaaggattggtttatttacttgtctattcatcacttttttcacttgttgttttgcctttactagattaaaaaatataattggtttgtgaaagaaagt |
40078722 |
T |
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| Q |
116 |
aagaaagaagacgggnnnnnnntaggagattgttgtttaataagagataaatagaaagnnnnnnnntacgagagaaaataaagaagtatatttatgtgaa |
215 |
Q |
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| T |
40078721 |
aagaaagaagacgggaaaaaaataggagattgttgtttaataagagataaatagaaagaaaaaaaatacgagagaaaataaagaagtatatttatgtgaa |
40078622 |
T |
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| Q |
216 |
ttcatacttgcatgttttttaaaatgtgaattcattcactatattttgtgtttggaactttcaaaatttacatgagtgaat |
296 |
Q |
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| T |
40078621 |
ttcatacttgcatgttttttaaaatgtgaattcattcactacattttgtgtttggaactttaaaaatttacatgagtgaat |
40078541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 354 - 489
Target Start/End: Complemental strand, 40078546 - 40078415
Alignment:
| Q |
354 |
gtgaattgattgagtaaaaaatgagtgaatcgtttaactcccttgattttacatagaatgaatcccttcactctattaagtgatctgtttcaattctttc |
453 |
Q |
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| T |
40078546 |
gtgaattgattcagtcaaaaataagtgaatcgtttaactcc-ttgattttacatagaatgaatcccttcactctattaagtgatctgtttcaattct--- |
40078451 |
T |
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| Q |
454 |
tttctttttcactcatttttaacacattcatttact |
489 |
Q |
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| T |
40078450 |
tttttttttcactcatttttaacacattcatttact |
40078415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 40080391 - 40080284
Alignment:
| Q |
16 |
attaaaggattggtttattcacttgtctattcatcacttttttcacttgttgttttgcctttactagattaaaaaatataattggtttgtgaaagaaagt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40080391 |
attaaaggattggtttattcacttgtctattcatcacttttttcaattgttgttttgcctttactagatta-aaaatataattggtttgtgaaagaaagt |
40080293 |
T |
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| Q |
116 |
aagaaagaa |
124 |
Q |
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| T |
40080292 |
aagaaagaa |
40080284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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