View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20045_low_7 (Length: 503)

Name: NF20045_low_7
Description: NF20045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20045_low_7
NF20045_low_7
[»] chr7 (27 HSPs)
chr7 (92-503)||(3091225-3091637)
chr7 (383-503)||(16360384-16360502)
chr7 (390-503)||(8379949-8380063)
chr7 (281-356)||(18295172-18295248)
chr7 (431-503)||(36453281-36453353)
chr7 (382-470)||(24456925-24457013)
chr7 (431-503)||(40349008-40349080)
chr7 (393-503)||(16662104-16662214)
chr7 (393-503)||(17636464-17636574)
chr7 (390-503)||(27942196-27942308)
chr7 (431-503)||(10981556-10981628)
chr7 (284-383)||(19341066-19341167)
chr7 (281-384)||(8363826-8363933)
chr7 (431-503)||(27813859-27813931)
chr7 (425-492)||(3498922-3498989)
chr7 (400-499)||(7743558-7743656)
chr7 (412-470)||(37983185-37983243)
chr7 (304-381)||(17264488-17264568)
chr7 (281-338)||(31422057-31422114)
chr7 (106-160)||(380632-380689)
chr7 (281-328)||(18887246-18887293)
chr7 (442-503)||(47110510-47110569)
chr7 (284-321)||(21626351-21626388)
chr7 (431-503)||(25614510-25614580)
chr7 (224-261)||(37126702-37126739)
chr7 (282-346)||(37126723-37126788)
chr7 (107-160)||(19340871-19340927)
[»] chr5 (37 HSPs)
chr5 (110-258)||(38097422-38097574)
chr5 (390-503)||(734495-734607)
chr5 (281-384)||(35634967-35635073)
chr5 (394-503)||(30403118-30403228)
chr5 (282-384)||(37259250-37259355)
chr5 (383-503)||(11319559-11319679)
chr5 (281-356)||(19663054-19663130)
chr5 (393-492)||(1056450-1056548)
chr5 (281-384)||(19647092-19647199)
chr5 (88-194)||(11775946-11776056)
chr5 (431-503)||(25773697-25773769)
chr5 (106-208)||(34438510-34438615)
chr5 (390-496)||(16054121-16054225)
chr5 (394-491)||(11796462-11796559)
chr5 (390-503)||(39070890-39071003)
chr5 (431-503)||(12807010-12807082)
chr5 (431-503)||(40886767-40886839)
chr5 (442-503)||(10285214-10285275)
chr5 (394-483)||(11795625-11795714)
chr5 (281-356)||(19676868-19676945)
chr5 (281-330)||(38395085-38395134)
chr5 (281-329)||(22270301-22270349)
chr5 (431-503)||(25683385-25683457)
chr5 (310-384)||(11776070-11776145)
chr5 (431-502)||(30720650-30720721)
chr5 (442-503)||(37900781-37900842)
chr5 (431-503)||(7277579-7277651)
chr5 (312-384)||(38352107-38352182)
chr5 (306-384)||(42740250-42740330)
chr5 (26-65)||(11775669-11775708)
chr5 (290-381)||(29086266-29086362)
chr5 (441-503)||(36561256-36561318)
chr5 (284-321)||(13626881-13626918)
chr5 (288-322)||(7348506-7348540)
chr5 (224-258)||(35635059-35635093)
chr5 (306-363)||(38097211-38097269)
chr5 (442-503)||(23098391-23098452)
[»] chr6 (27 HSPs)
chr6 (383-498)||(1814595-1814710)
chr6 (393-497)||(3798113-3798217)
chr6 (390-497)||(14286996-14287102)
chr6 (394-503)||(11370642-11370751)
chr6 (281-384)||(27156406-27156512)
chr6 (281-381)||(10894959-10895062)
chr6 (431-503)||(1605627-1605699)
chr6 (431-503)||(8626530-8626602)
chr6 (431-503)||(29260240-29260312)
chr6 (431-503)||(30734640-30734712)
chr6 (431-503)||(31559893-31559965)
chr6 (393-496)||(33845449-33845550)
chr6 (390-501)||(13757215-13757326)
chr6 (434-498)||(30734772-30734834)
chr6 (281-337)||(17750038-17750094)
chr6 (297-384)||(26092691-26092782)
chr6 (291-384)||(25987973-25988070)
chr6 (431-503)||(15064851-15064923)
chr6 (394-489)||(26860780-26860873)
chr6 (297-384)||(6059764-6059854)
chr6 (376-459)||(20398407-20398490)
chr6 (441-503)||(4129485-4129547)
chr6 (442-503)||(7761360-7761419)
chr6 (437-499)||(21277595-21277656)
chr6 (442-503)||(8235683-8235744)
chr6 (224-259)||(97328-97363)
chr6 (457-503)||(30235464-30235510)
[»] chr4 (33 HSPs)
chr4 (395-482)||(48652232-48652319)
chr4 (390-503)||(6129105-6129218)
chr4 (393-493)||(20714514-20714615)
chr4 (390-503)||(26676723-26676836)
chr4 (282-390)||(7114347-7114458)
chr4 (281-384)||(43335310-43335416)
chr4 (282-387)||(16401151-16401259)
chr4 (383-503)||(19692723-19692843)
chr4 (383-503)||(19703308-19703428)
chr4 (437-498)||(1988089-1988150)
chr4 (390-503)||(44568844-44568957)
chr4 (431-503)||(21310473-21310545)
chr4 (431-503)||(24706404-24706476)
chr4 (431-503)||(25704699-25704771)
chr4 (427-503)||(32543525-32543600)
chr4 (431-503)||(40122642-40122714)
chr4 (281-384)||(44504844-44504950)
chr4 (442-503)||(12071620-12071681)
chr4 (281-329)||(14797296-14797344)
chr4 (431-503)||(21661692-21661764)
chr4 (431-503)||(22321424-22321496)
chr4 (287-338)||(37465942-37465993)
chr4 (445-503)||(34324739-34324797)
chr4 (441-499)||(50767922-50767980)
chr4 (282-346)||(55405121-55405186)
chr4 (431-499)||(14261092-14261160)
chr4 (431-503)||(21670456-21670528)
chr4 (443-499)||(34284178-34284234)
chr4 (431-470)||(31892286-31892325)
chr4 (307-356)||(24535134-24535184)
chr4 (224-261)||(55405100-55405137)
chr4 (431-503)||(20249170-20249241)
chr4 (454-493)||(18507430-18507469)
[»] chr1 (41 HSPs)
chr1 (382-491)||(18396694-18396803)
chr1 (389-503)||(3657083-3657197)
chr1 (281-387)||(47074388-47074496)
chr1 (376-491)||(51064925-51065040)
chr1 (119-247)||(8919894-8920026)
chr1 (382-497)||(34458886-34459000)
chr1 (281-383)||(3288075-3288180)
chr1 (390-491)||(40261440-40261542)
chr1 (383-503)||(25929114-25929232)
chr1 (382-497)||(1837992-1838105)
chr1 (281-356)||(4692733-4692808)
chr1 (431-503)||(33082793-33082865)
chr1 (431-503)||(40783814-40783886)
chr1 (388-498)||(52477970-52478081)
chr1 (306-384)||(51064674-51064755)
chr1 (390-503)||(24772062-24772175)
chr1 (390-495)||(31061618-31061723)
chr1 (281-356)||(181554-181630)
chr1 (431-503)||(284381-284453)
chr1 (392-472)||(14351948-14352028)
chr1 (431-503)||(23045436-23045508)
chr1 (431-503)||(46771685-46771757)
chr1 (293-384)||(27133131-27133225)
chr1 (441-503)||(23526298-23526360)
chr1 (431-503)||(321674-321746)
chr1 (289-356)||(8920029-8920097)
chr1 (431-503)||(27211121-27211193)
chr1 (437-503)||(47038009-47038073)
chr1 (437-491)||(1749361-1749415)
chr1 (432-503)||(52037279-52037348)
chr1 (282-337)||(12307125-12307180)
chr1 (297-383)||(16763877-16763966)
chr1 (394-503)||(27143168-27143278)
chr1 (435-472)||(38490923-38490960)
chr1 (18-66)||(8919820-8919868)
chr1 (138-208)||(2622133-2622204)
chr1 (428-475)||(28437418-28437465)
chr1 (426-503)||(31003943-31004017)
chr1 (437-483)||(40052635-40052681)
chr1 (105-156)||(3288315-3288369)
chr1 (26-62)||(37914900-37914936)
[»] chr8 (33 HSPs)
chr8 (383-503)||(28562421-28562542)
chr8 (281-384)||(35538703-35538809)
chr8 (383-495)||(28567919-28568032)
chr8 (383-495)||(28575512-28575625)
chr8 (390-503)||(35866621-35866734)
chr8 (398-503)||(13881111-13881217)
chr8 (383-483)||(30906867-30906967)
chr8 (282-384)||(20099060-20099164)
chr8 (389-489)||(26629182-26629281)
chr8 (431-503)||(2540088-2540160)
chr8 (431-503)||(3585499-3585571)
chr8 (431-503)||(11174380-11174452)
chr8 (431-503)||(11646482-11646554)
chr8 (431-503)||(36068128-36068200)
chr8 (431-503)||(40058460-40058532)
chr8 (281-338)||(33363779-33363836)
chr8 (390-503)||(37345578-37345691)
chr8 (395-503)||(37510280-37510386)
chr8 (431-503)||(7146961-7147033)
chr8 (281-329)||(42809717-42809765)
chr8 (431-503)||(30999680-30999750)
chr8 (431-503)||(43275556-43275626)
chr8 (392-470)||(28326844-28326925)
chr8 (394-491)||(39151419-39151513)
chr8 (284-321)||(39313121-39313158)
chr8 (425-493)||(30268552-30268620)
chr8 (18-66)||(35538130-35538178)
chr8 (286-325)||(18427738-18427777)
chr8 (281-324)||(32382294-32382337)
chr8 (281-324)||(32436249-32436292)
chr8 (431-503)||(40918888-40918958)
chr8 (437-481)||(20546466-20546510)
chr8 (431-503)||(27035045-27035116)
[»] chr2 (22 HSPs)
chr2 (390-492)||(14779786-14779888)
chr2 (382-492)||(18078055-18078165)
chr2 (390-503)||(39562044-39562155)
chr2 (393-484)||(1002906-1002997)
chr2 (281-356)||(5885359-5885435)
chr2 (394-498)||(35179097-35179201)
chr2 (282-384)||(41318208-41318312)
chr2 (391-497)||(36447239-36447343)
chr2 (431-503)||(37673894-37673966)
chr2 (431-503)||(39938218-39938290)
chr2 (431-503)||(1102551-1102623)
chr2 (431-499)||(3518956-3519024)
chr2 (431-503)||(12969896-12969968)
chr2 (431-503)||(23366837-23366909)
chr2 (383-450)||(4917767-4917834)
chr2 (442-503)||(1646348-1646407)
chr2 (224-261)||(5088752-5088789)
chr2 (282-346)||(5088773-5088838)
chr2 (412-497)||(19976361-19976445)
chr2 (437-482)||(32840353-32840398)
chr2 (457-497)||(24777741-24777781)
chr2 (390-470)||(37284700-37284778)
[»] chr3 (38 HSPs)
chr3 (400-492)||(37780954-37781046)
chr3 (281-384)||(14195211-14195317)
chr3 (437-497)||(19897090-19897150)
chr3 (389-497)||(24064230-24064338)
chr3 (389-481)||(53559789-53559881)
chr3 (281-384)||(21496785-21496890)
chr3 (383-497)||(52805189-52805303)
chr3 (390-487)||(37293444-37293539)
chr3 (383-503)||(26105031-26105151)
chr3 (292-356)||(38000469-38000534)
chr3 (431-503)||(198903-198975)
chr3 (431-503)||(13364891-13364963)
chr3 (431-503)||(19241825-19241897)
chr3 (431-503)||(23088088-23088160)
chr3 (403-503)||(54086574-54086674)
chr3 (441-503)||(46694267-46694329)
chr3 (425-490)||(1455318-1455383)
chr3 (394-482)||(30171751-30171837)
chr3 (281-329)||(2736688-2736736)
chr3 (431-503)||(3383124-3383196)
chr3 (431-503)||(29375186-29375258)
chr3 (281-329)||(40925734-40925782)
chr3 (431-503)||(43750185-43750257)
chr3 (393-503)||(18356024-18356134)
chr3 (282-346)||(19971956-19972021)
chr3 (281-329)||(22126461-22126509)
chr3 (297-384)||(43946346-43946436)
chr3 (313-384)||(54788994-54789068)
chr3 (224-262)||(19972004-19972042)
chr3 (431-499)||(36881330-36881396)
chr3 (431-503)||(13702817-13702889)
chr3 (431-487)||(32835129-32835185)
chr3 (437-492)||(44522495-44522548)
chr3 (224-259)||(8425302-8425337)
chr3 (449-503)||(17755221-17755275)
chr3 (449-503)||(19056541-19056595)
chr3 (224-262)||(21496765-21496803)
chr3 (306-384)||(55121318-55121399)
[»] scaffold0056 (1 HSPs)
scaffold0056 (393-503)||(70834-70944)
[»] scaffold0024 (1 HSPs)
scaffold0024 (281-384)||(11787-11893)
[»] scaffold1431 (1 HSPs)
scaffold1431 (431-503)||(56-128)
[»] scaffold0054 (2 HSPs)
scaffold0054 (431-503)||(45502-45574)
scaffold0054 (297-383)||(3543-3632)
[»] scaffold0062 (1 HSPs)
scaffold0062 (433-503)||(422-490)
[»] scaffold0005 (1 HSPs)
scaffold0005 (281-329)||(42387-42435)
[»] scaffold0025 (1 HSPs)
scaffold0025 (449-503)||(65320-65375)
[»] scaffold1770 (1 HSPs)
scaffold1770 (441-503)||(220-282)
[»] scaffold0285 (1 HSPs)
scaffold0285 (297-383)||(7723-7812)
[»] scaffold0939 (1 HSPs)
scaffold0939 (390-449)||(935-994)


Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 92 - 503
Target Start/End: Original strand, 3091225 - 3091637
Alignment:
Q  92 gttattacttaattttgcttcctttgccaatttcaaccattcttgtttacaaattgttaaattgaaatttaactggttgaatttgatcaatttgtttctt 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||  |||||||||||||||||| ||||||    
T  3091225 gttattacttaattttgcttcctttgccaatttcaaccattcttgtttacaaatcgttaaattgaaattgaaccagttgaatttgatcaatttatttctt 3091324  T
Q  192 tgcaacaaaaaagttaatgatcgactttaatgagcgtaaaatgtcactttaaatatttaatgatcgatttttctctcnnnnnnnnnnnngtatttaatga 291  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||            |||||||||||    
T  3091325 tgcaataaaaaagttaatgattgactttaatgagcgtaaaatgtcactttaagtatttaatgatcgacttttctctcaaaaaaaa----gtatttaatga 3091420  T
Q  292 tcgactttatgtattat--gtagtttaaattttgaatgatc-aatttttgtttattacaacttaaatgatgtattcaatatcatttatatattttacttc 388  Q
    |||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  3091421 tcgactttatgtattatatgtagtttaaattttgaatgatcgaatttttgtttattacaacttaaatgatgtattcaatatcatttatatattttactcc 3091520  T
Q  389 atccgttt--cacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttcta 486  Q
    ||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3091521 atccgtttttcacgatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttgttatttttgatgaaattctttgtgttttttcta 3091620  T
Q  487 taatacccttaatcatt 503  Q
    |||||||||||| ||||    
T  3091621 taatacccttaaccatt 3091637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 383 - 503
Target Start/End: Original strand, 16360384 - 16360502
Alignment:
Q  383 tacttcatccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttt 482  Q
    |||| ||| ||||||| ||||||||| ||||||||| |||| |||||||||| ||||||||||||||||| ||||||||||||||||||  |||||||||    
T  16360384 tactccattcgtttcataatacttgttgcttttgaggaaattacacataccagaaaatcaaataaattttgttatttttgatgaaattc--tgtgttttt 16360481  T
Q  483 tctataatacccttaatcatt 503  Q
    |||||||||||||||| ||||    
T  16360482 tctataatacccttaaccatt 16360502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 390 - 503
Target Start/End: Original strand, 8379949 - 8380063
Alignment:
Q  390 tccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtg-ttttttctata 488  Q
    ||||||||||||||||||||| ||||||| |||| ||| |||| || |||||||||||||||| ||||| || ||||| || |||||| |||||||||||    
T  8379949 tccgtttcacaatacttgtcgattttgaggaaattacatatactaagaaatcaaataaattttgttattgttaatgaacttttttgtgcttttttctata 8380048  T
Q  489 atacccttaatcatt 503  Q
    |||||| ||||||||    
T  8380049 atacccctaatcatt 8380063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 281 - 356
Target Start/End: Original strand, 18295172 - 18295248
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttgaatgatc-aatttttgtttattacaacttaaatg 356  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| |||||||| |||||||||    
T  18295172 gtatttaatgatcgactttatatattatgtagtttaaattttgaatgatcgattttttatttattactacttaaatg 18295248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 36453353 - 36453281
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||    
T  36453353 accaagaaaccaaataaattttattatttttgatgaaaatatgtgtgttttttctataatacccttaatcatt 36453281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 382 - 470
Target Start/End: Complemental strand, 24457013 - 24456925
Alignment:
Q  382 ttacttcatccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaatt 470  Q
    ||||| |||| |||||| ||||||||  ||||||||| |||| |||||||| ||||||||||||||||||| |||||||| ||||||||    
T  24457013 ttactccatctgtttcaaaatacttgctgcttttgaggaaattacacatactaaaaaatcaaataaattttgttattttttatgaaatt 24456925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 40349008 - 40349080
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| |||||||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  40349008 accaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatt 40349080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 393 - 503
Target Start/End: Original strand, 16662104 - 16662214
Alignment:
Q  393 gtttcacaatacttgtcgcttttgagtaaatcacacatac--caaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataat 490  Q
    |||||||| ||||||||||||||||| || | |||||||   ||| |||| ||||||||||| |||||||||||||||   |||||||||||| ||||||    
T  16662104 gtttcacagtacttgtcgcttttgagaaatttacacatatatcaagaaataaaataaattttgttatttttgatgaaa--atttgtgttttttttataat 16662201  T
Q  491 acccttaatcatt 503  Q
    |||||||| ||||    
T  16662202 acccttaaccatt 16662214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 393 - 503
Target Start/End: Original strand, 17636464 - 17636574
Alignment:
Q  393 gtttcacaatacttgtcgcttttgagtaaatcacacatac--caaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataat 490  Q
    |||||||| ||||||||||||||||| || | |||||||   ||| |||| ||||||||||| |||||||||||||||   |||||||||||| ||||||    
T  17636464 gtttcacagtacttgtcgcttttgagaaatttacacatatatcaagaaataaaataaattttgttatttttgatgaaa--atttgtgttttttttataat 17636561  T
Q  491 acccttaatcatt 503  Q
    |||||||| ||||    
T  17636562 acccttaaccatt 17636574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 390 - 503
Target Start/End: Complemental strand, 27942308 - 27942196
Alignment:
Q  390 tccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataa 489  Q
    ||||||| ||||||||| || ||||| || || | |||||| |||||||||||| |||||||| |||||||| |||| ||| | ||||||||||||||||    
T  27942308 tccgttttacaatacttctcccttttaaggaatttacacattccaaaaaatcaa-taaatttttttatttttaatgagattatgtgtgttttttctataa 27942210  T
Q  490 tacccttaatcatt 503  Q
    |||| |||| ||||    
T  27942209 tacctttaaccatt 27942196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 10981556 - 10981628
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  10981556 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatt 10981628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 383
Target Start/End: Original strand, 19341066 - 19341167
Alignment:
Q  284 tttaatgatcgactttatgt-attatgtagtttaaattttgaatgatcaatttttg-tttattacaacttaaatgatgtattcaatatcatttatatatt 381  Q
    |||||||||||||||||| | ||||| || ||||||||| |||||||| ||||||| ||||||||||||||||||   ||| |||||| ||| |||||||    
T  19341066 tttaatgatcgactttatattattatataatttaaatttggaatgatcgatttttgatttattacaacttaaatgtgttatacaatatgattcatatatt 19341165  T
Q  382 tt 383  Q
    ||    
T  19341166 tt 19341167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 281 - 384
Target Start/End: Original strand, 8363826 - 8363933
Alignment:
Q  281 gtatttaatgatcgactttatg-tattatgtagtttaaattttgaatgatcaattttt-gtttattacaacttaaa--tgatgtattcaatatcatttat 376  Q
    |||| |||||| |||||||||  |||||||||||||||||||||||||||| |||||| |||||| || |||||||  || ||| || ||||| ||||||    
T  8363826 gtatgtaatgaacgactttattatattatgtagtttaaattttgaatgatcgatttttggtttataacgacttaaatgtgttgtgtttaatatgatttat 8363925  T
Q  377 atatttta 384  Q
    ||||||||    
T  8363926 atatttta 8363933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 27813859 - 27813931
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | | ||| ||||||||||||||||||||||||    
T  27813859 accaagaaaccaaataaattttgttatttttgatgaaaatatgtatgtgttttctataatacccttaatcatt 27813931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 425 - 492
Target Start/End: Complemental strand, 3498989 - 3498922
Alignment:
Q  425 acacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatac 492  Q
    |||||||||||||| |||||| |||||| |||||||| |||||||| ||||| | |||||||||||||    
T  3498989 acacataccaaaaattcaaattaattttgttattttttatgaaattttttgtatcttttctataatac 3498922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 499
Target Start/End: Complemental strand, 7743656 - 7743558
Alignment:
Q  400 aatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaat 499  Q
    ||||||||| ||||||||| ||   | ||||||||| | |||||||||||||| ||||||||||||||||| | ||| || ||||||||||||| |||||    
T  7743656 aatacttgttgcttttgaggaatatagacataccaagatatcaaataaattttgttatttttgatgaaattatgtgt-ttctttctataataccgttaat 7743558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 412 - 470
Target Start/End: Original strand, 37983185 - 37983243
Alignment:
Q  412 ttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaatt 470  Q
    ||||||| |||| ||||||| ||| |||||||||||||||| |||||||||||||||||    
T  37983185 ttttgaggaaattacacatatcaagaaatcaaataaattttgttatttttgatgaaatt 37983243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 381
Target Start/End: Complemental strand, 17264568 - 17264488
Alignment:
Q  304 attatgtagtttaaattttgaatgatcaatttttg-tttattacaacttaaa--tgatgtattcaatatcatttatatatt 381  Q
    |||||||||||||||||||||||||||  |||||| |||||||| |||||||  || ||||| |||||| |||||||||||    
T  17264568 attatgtagtttaaattttgaatgatcggtttttgatttattacgacttaaatgtgttgtatacaatataatttatatatt 17264488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 338
Target Start/End: Original strand, 31422057 - 31422114
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttgaatgatcaatttttg 338  Q
    |||| |||| ||||||||||| |||||||||||||||||||||||||||  |||||||    
T  31422057 gtatgtaataatcgactttatatattatgtagtttaaattttgaatgattgatttttg 31422114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 380632 - 380689
Alignment:
Q  106 ttgcttcctttgccaatttcaaccattcttgt---ttacaaattgttaaattgaaatt 160  Q
    ||||||||||| ||||||||||||||||||||   ||||| |||||||||||||||||    
T  380632 ttgcttcctttcccaatttcaaccattcttgtacattacacattgttaaattgaaatt 380689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 281 - 328
Target Start/End: Original strand, 18887246 - 18887293
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttgaatga 328  Q
    |||| |||||||||||||||| |||||||||||||||||||| |||||    
T  18887246 gtatgtaatgatcgactttatatattatgtagtttaaattttaaatga 18887293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 503
Target Start/End: Original strand, 47110510 - 47110569
Alignment:
Q  442 aaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||||||||| ||||||||||||||| | | ||||||||  ||||||||||||||||||||    
T  47110510 aaataaattttgttatttttgatgaaaatatgtgtgtttt--ctataatacccttaatcatt 47110569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 284 - 321
Target Start/End: Original strand, 21626351 - 21626388
Alignment:
Q  284 tttaatgatcgactttatgtattatgtagtttaaattt 321  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  21626351 tttaatgatcgactttatgtattatatagtttaaattt 21626388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 25614580 - 25614510
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||||||| |||||||||||| |||||||||||||||   | ||||| ||||||  ||||||||||||||||    
T  25614580 accaaaaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctgaaatacccttaatcatt 25614510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 37126702 - 37126739
Alignment:
Q  224 agcgtaaaatgtcactttaaatatttaatgatcgattt 261  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  37126702 agcgtaaaatgtcactttaaatatttaattatcgattt 37126739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 346
Target Start/End: Original strand, 37126723 - 37126788
Alignment:
Q  282 tatttaatgatcgactttatgtattatgtagtttaaattttgaatgatcaattttt-gtttattac 346  Q
    |||||||| ||||| || |||||||||| | |||||||||||||||||| |||||| |||||||||    
T  37126723 tatttaattatcgatttgatgtattatgcactttaaattttgaatgatcgatttttggtttattac 37126788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 19340871 - 19340927
Alignment:
Q  107 tgcttcctttgccaatttcaaccattcttgt---ttacaaattgttaaattgaaatt 160  Q
    |||||||||||| ||||||||||||||||||   ||||| ||| |||||||||||||    
T  19340871 tgcttcctttgctaatttcaaccattcttgttcattacatattcttaaattgaaatt 19340927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 110 - 258
Target Start/End: Complemental strand, 38097574 - 38097422
Alignment:
Q  110 ttcctttgccaatttcaaccattcttgtt---tacaaattgttaaattgaaatttaa-ctggttgaatttgatcaatttgtttctttgcaacaaaaaagt 205  Q
    |||||||| |||||||||||| |||||||   |||| ||||||||||||||||| || | ||||||| ||||| | ||||||| ||||||||| ||||||    
T  38097574 ttcctttgtcaatttcaaccaatcttgttcattacacattgttaaattgaaattgaaacgggttgaaattgataattttgtttttttgcaacagaaaagt 38097475  T
Q  206 taatgatcgactttaatgagcgtaaaatgtcactttaaatatttaatgatcga 258  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||| |||||    
T  38097474 taatgatcgactttaatgaacgtaaaatgtcactctaaatatttaattatcga 38097422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 390 - 503
Target Start/End: Complemental strand, 734607 - 734495
Alignment:
Q  390 tccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataa 489  Q
    ||||||||||||||||||||  ||||||  |||| || ||||||||| ||||||||||||||| | ||| ||||||||||||||||||| ||||||||||    
T  734607 tccgtttcacaatacttgtccattttgaagaaattactcataccaaagaatcaaataaattttgtcattattgatgaaattctttgtgt-ttttctataa 734509  T
Q  490 tacccttaatcatt 503  Q
    |||||||| |||||    
T  734508 tacccttactcatt 734495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 281 - 384
Target Start/End: Complemental strand, 35635073 - 35634967
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttgaatgatcaattttt-gtttattacaacttaaa--tgatgtattcaatatcatttata 377  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||| |||||||||||||||||  || | ||| |||||| |||||||    
T  35635073 gtatttaatgatcgactttatatattatgtagtttaaattttgaatgatcgttttttggtttattacaacttaaatgtgttatatgcaatatgatttata 35634974  T
Q  378 tatttta 384  Q
    |||||||    
T  35634973 tatttta 35634967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 394 - 503
Target Start/End: Complemental strand, 30403228 - 30403118
Alignment:
Q  394 tttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttg-tgttttttctataatac 492  Q
    ||||||||||||| || |||||||| || | ||||||||||| ||| |||||||||||| ||||||||||||||||||| || | |||||||||||||||    
T  30403228 tttcacaatacttatctcttttgagaaatttacacataccaagaaaccaaataaattttgttatttttgatgaaattctgtgtttttttttctataatac 30403129  T
Q  493 ccttaatcatt 503  Q
     ||||||||||    
T  30403128 tcttaatcatt 30403118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 282 - 384
Target Start/End: Original strand, 37259250 - 37259355
Alignment:
Q  282 tatttaatgatcgactttatgtattatgtagtttaaattttgaatgatc-aatttttgtttattacaacttaa--atgatgtattcaatatcatttatat 378  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||| | |||| ||||||||||||||||  ||| ||||| |||||| ||||||||    
T  37259250 tatttaatgatcgactttatgtattacgtagtttacattttgaatgatcgacttttggtttattacaacttaaatatgttgtatgcaatatgatttatat 37259349  T
Q  379 atttta 384  Q
    ||||||    
T  37259350 atttta 37259355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 383 - 503
Target Start/End: Original strand, 11319559 - 11319679
Alignment:
Q  383 tacttcatccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttt 482  Q
    |||||| |||||||||||||| |||||  ||||||  |||| |||||||| ||  |||||||||||| || | |||||| |||||||||||||| |||||    
T  11319559 tacttcctccgtttcacaatatttgtccattttgaagaaattacacatactaatgaatcaaataaatgttgtaattttttatgaaattctttgttttttt 11319658  T
Q  483 tctataatacccttaatcatt 503  Q
    ||||||||||||||| |||||    
T  11319659 tctataatacccttactcatt 11319679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 281 - 356
Target Start/End: Complemental strand, 19663130 - 19663054
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttgaatgatcaatttttg-tttattacaacttaaatg 356  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||    
T  19663130 gtatttaatgatcgactttatatattatgtagtttaaattttgaataatcgatttttgatttattacaacttaaatg 19663054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 393 - 492
Target Start/End: Complemental strand, 1056548 - 1056450
Alignment:
Q  393 gtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatac 492  Q
    |||||||||||||| || |||||||| |||| |||||||| || ||||  |||||||||| |||||||| |||||||||||||||| |||||||||||||    
T  1056548 gtttcacaatacttatcacttttgagaaaattacacatactaagaaattgaataaattttgttatttttaatgaaattctttgtgt-ttttctataatac 1056450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 281 - 384
Target Start/End: Original strand, 19647092 - 19647199
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttgaatgatcaa--tttttgtttattacaacttaaa--tgatgtattcaatatcatttat 376  Q
    ||||||||| ||||| |||||  ||||||||||||||||||||||||| | |  ||||||||||||||||||||||  || ||||| |||||| ||||||    
T  19647092 gtatttaattatcgattttatacattatgtagtttaaattttgaatgaacgatttttttgtttattacaacttaaatgtgttgtatgcaatataatttat 19647191  T
Q  377 atatttta 384  Q
    ||||||||    
T  19647192 atatttta 19647199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 11775946 - 11776056
Alignment:
Q  88 tccagttattacttaattttgcttcctttgccaatttcaaccattcttgt---ttacaaattgttaaattgaaatt-taactggttgaatttgatcaatt 183  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||| |   ||||| |||||||||||||||||  || || ||||| ||||| ||||    
T  11775946 tccagttattacttaacattgcttcctttgccaatttcaaccattcttatttattacatattgttaaattgaaattgaaaatgattgaaattgataaatt 11776045  T
Q  184 tgtttctttgc 194  Q
    ||||| |||||    
T  11776046 tgtttatttgc 11776056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 25773697 - 25773769
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| |||||||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  25773697 accaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatt 25773769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 106 - 208
Target Start/End: Complemental strand, 34438615 - 34438510
Alignment:
Q  106 ttgcttcctttgccaatttcaaccattcttgt---ttacaaattgttaaattgaaatt-taactggttgaatttgatcaatttgtttctttgcaacaaaa 201  Q
    ||||| |||||| |||||||||||||||||||   ||||| |||||||||||||||||  |||| |||||||||||| ||||| ||||||||||||| ||    
T  34438615 ttgctccctttgtcaatttcaaccattcttgttcattacacattgttaaattgaaattgaaactagttgaatttgat-aatttatttctttgcaacagaa 34438517  T
Q  202 aagttaa 208  Q
    |||||||    
T  34438516 aagttaa 34438510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 390 - 496
Target Start/End: Original strand, 16054121 - 16054225
Alignment:
Q  390 tccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataa 489  Q
    ||||||| ||||||||||||| || ||| ||||| |||||||  || |||| ||||||||||| |||||||| |||||||  ||||||||||||||||||    
T  16054121 tccgttttacaatacttgtcgtttatgaataaattacacatattaagaaatgaaataaattttgttattttttatgaaat--tttgtgttttttctataa 16054218  T
Q  490 taccctt 496  Q
    || ||||    
T  16054219 tatcctt 16054225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 394 - 491
Target Start/End: Original strand, 11796462 - 11796559
Alignment:
Q  394 tttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataata 491  Q
    ||||||| ||||||||  ||||||  |||| ||| ||||||| |||| |||| |||||| ||||||||||||||||||| ||||||| ||||||||||    
T  11796462 tttcacactacttgtcatttttgaagaaattacagataccaagaaattaaattaattttgttatttttgatgaaattctatgtgtttgttctataata 11796559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 390 - 503
Target Start/End: Original strand, 39070890 - 39071003
Alignment:
Q  390 tccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataa 489  Q
    |||||||||||||||||||   ||||||  |||| |||||||  ||  |||||||||||| || | ||||||||||||||   |||||||||||||||||    
T  39070890 tccgtttcacaatacttgttcattttgaagaaattacacatattaaggaatcaaataaatgttgtcatttttgatgaaatctgttgtgttttttctataa 39070989  T
Q  490 tacccttaatcatt 503  Q
    |||||||| |||||    
T  39070990 tacccttactcatt 39071003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 12807082 - 12807010
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  12807082 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatt 12807010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 40886839 - 40886767
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||||| |||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  40886839 accaagaaatcgaataaattttgttatttttgatgaaaatatgtgtgtattttctataatacccttaatcatt 40886767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 442 - 503
Target Start/End: Complemental strand, 10285275 - 10285214
Alignment:
Q  442 aaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  10285275 aaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatt 10285214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 394 - 483
Target Start/End: Complemental strand, 11795714 - 11795625
Alignment:
Q  394 tttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgtttttt 483  Q
    |||||||||| |||| ||||||||  |||| |||||||||||| ||||||||||||||| | | |||| |  ||||||||||||||||||    
T  11795714 tttcacaatatttgttgcttttgaaaaaattacacataccaaacaatcaaataaattttgtaactttttaataaattctttgtgtttttt 11795625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 356
Target Start/End: Complemental strand, 19676945 - 19676868
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaa-ttttgaatgatcaattttt-gtttattacaacttaaatg 356  Q
    |||||||| |||||||||||| |||||||||||||||| |||||| ||| | |||||| |||||||||||||||||||    
T  19676945 gtatttaaggatcgactttatatattatgtagtttaaatttttgattgaccgatttttggtttattacaacttaaatg 19676868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 38395134 - 38395085
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttgaatgatc 330  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  38395134 gtatctaatgatcgactttatatattatgtagtttaaattttgaatgatc 38395085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 22270349 - 22270301
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttgaatgat 329  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||    
T  22270349 gtatgtaatgatcgactttatatattatgtagtttaaattttgaatgat 22270301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 25683457 - 25683385
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||| ||||| | ||||| ||||||||||||||||||| ||||    
T  25683457 accaagaaaccaaataaattttgttatttttgataaaattatgtgtgtgttttctataatacccttaaccatt 25683385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 11776070 - 11776145
Alignment:
Q  310 tagtttaaattttgaatgatcaatttttg-tttattacaacttaaatgatgtattcaatatcatttatatatttta 384  Q
    ||||||||||||||||||||| ||||||| |||||||||| ||||||   |||| ||||||| |||||||||||||    
T  11776070 tagtttaaattttgaatgatcgatttttgatttattacaaattaaatatcgtatacaatatcttttatatatttta 11776145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 431 - 502
Target Start/End: Complemental strand, 30720721 - 30720650
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcat 502  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| |||| ||||||||||||||||||    
T  30720721 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaatcat 30720650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 442 - 503
Target Start/End: Complemental strand, 37900842 - 37900781
Alignment:
Q  442 aaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    |||||||||||  |||||||||||||||| | ||||| ||||||||||||||||||| ||||    
T  37900842 aaataaattttgatatttttgatgaaattatatgtgtgttttctataatacccttaaccatt 37900781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 7277651 - 7277579
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||| ||||| | ||||| |||||||||||||| |||| ||||    
T  7277651 accaataaaccaaataaattttgttatttttgatcaaattatgtgtgtgttttctataatacctttaaccatt 7277579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 384
Target Start/End: Original strand, 38352107 - 38352182
Alignment:
Q  312 gtttaaattttgaatgatcaattttt-gtttattacaacttaaa--tgatgtattcaatatcatttatatatttta 384  Q
    ||||||||||||||||||| |||||| |||||||||||||||||  || ||||| |||||| ||| ||||||||||    
T  38352107 gtttaaattttgaatgatcgatttttggtttattacaacttaaatgtgttgtatgcaatatgattcatatatttta 38352182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 384
Target Start/End: Complemental strand, 42740330 - 42740250
Alignment:
Q  306 tatgtagtttaaattttgaatgatc-aatttttgtttattacaacttaa-atgatgtattcaatatcatttatatatttta 384  Q
    ||||||||||||||||||||||||| | |||||||||||||  ||||||  || ||||| |||||| ||||||||||||||    
T  42740330 tatgtagtttaaattttgaatgatcgattttttgtttattatgacttaatgtgttgtatgcaatatgatttatatatttta 42740250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 11775669 - 11775708
Alignment:
Q  26 gaaataaacaataaaatatatacatatggtacataattga 65  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  11775669 gaaataaacaatgaaatatatacatatggtacataattga 11775708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 381
Target Start/End: Original strand, 29086266 - 29086362
Alignment:
Q  290 gatcgactttatgtattatgt--agtttaaattttgaatgatcaattttt-gtttattacaacttaa--atgatgtattcaatatcatttatatatt 381  Q
    |||||||||||| ||||||||  ||| ||||||||||||||||| ||||| ||||||||| ||||||  ||| ||||| ||||||  ||||||||||    
T  29086266 gatcgactttatatattatgtgtagtataaattttgaatgatcagtttttggtttattacgacttaaatatgttgtatgcaatatgttttatatatt 29086362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 503
Target Start/End: Complemental strand, 36561318 - 36561256
Alignment:
Q  441 caaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    |||||||||||| ||||||||||||||| | | ||||| |||||||||||||| |||| ||||    
T  36561318 caaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacctttaaccatt 36561256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 284 - 321
Target Start/End: Complemental strand, 13626918 - 13626881
Alignment:
Q  284 tttaatgatcgactttatgtattatgtagtttaaattt 321  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  13626918 tttaatgatcgactttatgtattatatagtttaaattt 13626881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 322
Target Start/End: Original strand, 7348506 - 7348540
Alignment:
Q  288 atgatcgactttatgtattatgtagtttaaatttt 322  Q
    |||||| ||||||||||||||||||||||||||||    
T  7348506 atgatccactttatgtattatgtagtttaaatttt 7348540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 258
Target Start/End: Complemental strand, 35635093 - 35635059
Alignment:
Q  224 agcgtaaaatgtcactttaaatatttaatgatcga 258  Q
    |||||||||||||||||||| ||||||||||||||    
T  35635093 agcgtaaaatgtcactttaagtatttaatgatcga 35635059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 38097269 - 38097211
Alignment:
Q  306 tatgtagtttaaattttgaatgatcaatttttg-tttattacaacttaaatgatgtatt 363  Q
    |||||| |||||||||| |||||| || ||||| |||||||||||||||||| ||||||    
T  38097269 tatgtactttaaattttaaatgattaacttttggtttattacaacttaaatgttgtatt 38097211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 503
Target Start/End: Complemental strand, 23098452 - 23098391
Alignment:
Q  442 aaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||||||||| ||||||||||||||||| | ||  | ||| ||||||||||||||| ||||    
T  23098452 aaataaattttgttatttttgatgaaattatgtgcatgtttcctataatacccttaaccatt 23098391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 383 - 498
Target Start/End: Original strand, 1814595 - 1814710
Alignment:
Q  383 tacttcatccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttt 482  Q
    |||| ||||||||||||||||||||||||||||||| |||| ||||||| ||| |||||||||||| ||| |||||||||||||||||||| ||||||||    
T  1814595 tactccatccgtttcacaatacttgtcgcttttgagaaaattacacatatcaagaaatcaaataaactttgttatttttgatgaaattcttcgtgttttt 1814694  T
Q  483 tctataatacccttaa 498  Q
     ||||||  |||||||    
T  1814695 cctataacgcccttaa 1814710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 393 - 497
Target Start/End: Original strand, 3798113 - 3798217
Alignment:
Q  393 gtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatac 492  Q
    |||||||||||||||||||||||||| ||||     |||||||||||||||||||||||| |||||||| ||||| || |||||||||||||||||| ||    
T  3798113 gtttcacaatacttgtcgcttttgagaaaattttgtataccaaaaaatcaaataaattttgttatttttcatgaagttatttgtgttttttctataacac 3798212  T
Q  493 cctta 497  Q
    |||||    
T  3798213 cctta 3798217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 390 - 497
Target Start/End: Original strand, 14286996 - 14287102
Alignment:
Q  390 tccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataa 489  Q
    ||||||||||||||||||| | ||||||| |||| |||||| |||| |||||||||||||||| |||||||| |||||||||| ||  ||||||||||||    
T  14286996 tccgtttcacaatacttgtagtttttgagaaaattacacatgccaataaatcaaataaattttgttattttttatgaaattctgtg-cttttttctataa 14287094  T
Q  490 taccctta 497  Q
    ||||||||    
T  14287095 taccctta 14287102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 394 - 503
Target Start/End: Complemental strand, 11370751 - 11370642
Alignment:
Q  394 tttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacc 493  Q
    |||||||||||||||||  |||||  |||| |||||||  || |||||||||||||||| ||||||||||||| |||| ||||||||||| ||||||||     
T  11370751 tttcacaatacttgtcgtatttgaaaaaattacacataataagaaatcaaataaattttgttatttttgatgatattcattgtgttttttttataatact 11370652  T
Q  494 cttaatcatt 503  Q
    ||||| ||||    
T  11370651 cttaaccatt 11370642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 281 - 384
Target Start/End: Complemental strand, 27156512 - 27156406
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttgaatgatcaattttt-gtttattacaacttaaa--tgatgtattcaatatcatttata 377  Q
    |||||||||||| |  ||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||  ||  |||| |||||| |||||||    
T  27156512 gtatttaatgattggttttatatattatgtagtttaaattttgaatgatcaatttttggcttattacaacttaaatgtgtagtatgcaatatgatttata 27156413  T
Q  378 tatttta 384  Q
    |||||||    
T  27156412 tatttta 27156406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 281 - 381
Target Start/End: Complemental strand, 10895062 - 10894959
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttgaatgatcaattttt-gtttattacaacttaaa--tgatgtattcaatatcatttata 377  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||  ||||| ||||||||| | |||||  || ||||| |||||| |||||||    
T  10895062 gtatgtaatgatcgactttatatattatgtagtttaaattttgaatgatcggtttttggtttattacgaattaaatgtgttgtatgcaatataatttata 10894963  T
Q  378 tatt 381  Q
    ||||    
T  10894962 tatt 10894959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 1605627 - 1605699
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  1605627 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatt 1605699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 8626530 - 8626602
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  8626530 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatt 8626602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 29260240 - 29260312
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  29260240 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatt 29260312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 30734712 - 30734640
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  30734712 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatt 30734640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 31559965 - 31559893
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    |||||||||||||||||||||| ||||||||||||||| | | ||| | |||||| |||||||||||||||||    
T  31559965 accaaaaaatcaaataaattttgttatttttgatgaaaatatgtgtatgttttctgtaatacccttaatcatt 31559893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 393 - 496
Target Start/End: Complemental strand, 33845550 - 33845449
Alignment:
Q  393 gtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatac 492  Q
    |||||| ||||||| ||| ||||||| |||| ||||| | |||| ||||||||||||||| ||||||||||||||||  | ||| ||||||||||| |||    
T  33845550 gtttcaaaatacttatcgtttttgagaaaattacacacatcaaagaatcaaataaattttgttatttttgatgaaat--tatgtattttttctatagtac 33845453  T
Q  493 cctt 496  Q
    ||||    
T  33845452 cctt 33845449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 390 - 501
Target Start/End: Original strand, 13757215 - 13757326
Alignment:
Q  390 tccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataa 489  Q
    ||||||||| ||||| ||||  |||||   |||| ||||  ||||| ||| |||||||||||| ||||||||||||||| | | ||||| ||||||||||    
T  13757215 tccgtttcaaaatacatgtccattttggagaaattacactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataa 13757314  T
Q  490 tacccttaatca 501  Q
    ||||||||||||    
T  13757315 tacccttaatca 13757326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 434 - 498
Target Start/End: Complemental strand, 30734834 - 30734772
Alignment:
Q  434 aaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaa 498  Q
    ||||||||||||||||||| ||||||||||||||||  | ||||| |||||||||||||||||||    
T  30734834 aaaaaatcaaataaattttgttatttttgatgaaat--tatgtgtgttttctataatacccttaa 30734772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 281 - 337
Target Start/End: Original strand, 17750038 - 17750094
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttgaatgatcaattttt 337  Q
    ||||||||||||||| ||||| ||||||||| || ||||||||||||||||||||||    
T  17750038 gtatttaatgatcgaatttatatattatgtacttcaaattttgaatgatcaattttt 17750094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 297 - 384
Target Start/End: Original strand, 26092691 - 26092782
Alignment:
Q  297 tttatgtattatgtagtttaaattttgaatgatcaatttttg-tttattacaacttaa--atgatgtat-tcaatatcatttatatatttta 384  Q
    |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| |||  ||| ||||| | ||||| ||||||||||||||    
T  26092691 tttatgtattatgtagtttaaattttgaattatcgatttttgatttattacaacataaatatgttgtatgtaaatatgatttatatatttta 26092782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 291 - 384
Target Start/End: Original strand, 25987973 - 25988070
Alignment:
Q  291 atcgactttatgtattatgtagtttaaattttgaatgatcaattttt-gtttattacaacttaa--atgatgtattc-aatatcatttatatatttta 384  Q
    ||||| |||||||||| ||||||||||||||||||| ||| ||||||  |||||||||||||||  ||| ||||| | ||||| ||||||||||||||    
T  25987973 atcgattttatgtattgtgtagtttaaattttgaattatcgatttttaatttattacaacttaaatatgttgtatgcaaatataatttatatatttta 25988070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 15064923 - 15064851
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||||| | ||||| |||| |||| ||||||||| ||||    
T  15064923 accaagaaaccaaataaattttgttatttttgatgaaattatgtgtgtgttttttatactacccttaaccatt 15064851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 489
Target Start/End: Original strand, 26860780 - 26860873
Alignment:
Q  394 tttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataa 489  Q
    |||||||||  |||| | ||||||| |||| ||||| | ||| ||||||||||| |||| ||||||||||||||||  ||||||||| ||||||||    
T  26860780 tttcacaatgtttgttgtttttgaggaaattacacacatcaagaaatcaaataactttttttatttttgatgaaat--tttgtgtttattctataa 26860873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 297 - 384
Target Start/End: Complemental strand, 6059854 - 6059764
Alignment:
Q  297 tttatgtattatgtagtttaaattttgaatgatcaattttt-gtttattacaacttaa--atgatgtattcaatatcatttatatatttta 384  Q
    ||||| |||||| ||||||||||||| ||||||| |||||| |||||||| |||||||  ||| | ||| |||||| ||||||||||||||    
T  6059854 tttatatattatatagtttaaattttaaatgatcgatttttggtttattataacttaaatatgttatatacaatatgatttatatatttta 6059764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 459
Target Start/End: Complemental strand, 20398490 - 20398407
Alignment:
Q  376 tatattttacttcatccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattattt 459  Q
    |||||| |||| | ||||||||| ||||||||||||||||||  |||| || ||||  || |||||||||||||||| ||||||    
T  20398490 tatattatactacctccgtttcataatacttgtcgcttttgaaaaaattacgcatattaagaaatcaaataaattttgttattt 20398407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 503
Target Start/End: Original strand, 4129485 - 4129547
Alignment:
Q  441 caaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    |||||||||||| |||||||| |||||| | | ||||| ||||||||||||||||||| ||||    
T  4129485 caaataaattttgttattttttatgaaaatatgtgtgtgttttctataatacccttaaccatt 4129547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 503
Target Start/End: Original strand, 7761360 - 7761419
Alignment:
Q  442 aaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||||||||| ||||||||||||||| | | ||||||||  ||||||||||||||||||||    
T  7761360 aaataaattttgttatttttgatgaaaatatgtgtgtttt--ctataatacccttaatcatt 7761419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 437 - 499
Target Start/End: Complemental strand, 21277656 - 21277595
Alignment:
Q  437 aaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaat 499  Q
    |||||||||||||||| |||||||| |||||| | | |||| |||||||||||||||||||||    
T  21277656 aaatcaaataaattttgttattttttatgaaaatttatgtg-tttttctataatacccttaat 21277595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 442 - 503
Target Start/End: Original strand, 8235683 - 8235744
Alignment:
Q  442 aaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||||| ||| |||||||| |||| ||| | ||||| ||||||||||||||||||||||||    
T  8235683 aaataaaatttgttattttttatgatattatgtgtgtgttttctataatacccttaatcatt 8235744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 259
Target Start/End: Original strand, 97328 - 97363
Alignment:
Q  224 agcgtaaaatgtcactttaaatatttaatgatcgat 259  Q
    ||||||||||||||||||||||||||||| ||||||    
T  97328 agcgtaaaatgtcactttaaatatttaattatcgat 97363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 457 - 503
Target Start/End: Complemental strand, 30235510 - 30235464
Alignment:
Q  457 tttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||||||||||||||| |||||||||| ||| ||||||||||    
T  30235510 ttttttatgaaattctttgtgctttttctatattactcttaatcatt 30235464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 395 - 482
Target Start/End: Original strand, 48652232 - 48652319
Alignment:
Q  395 ttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttt 482  Q
    |||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||    
T  48652232 ttcacaatacttgtcgcttttgagaaaattacacataccaagaaatcaaataaattttgttatttttgatgaaattctttgtattttt 48652319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 390 - 503
Target Start/End: Complemental strand, 6129218 - 6129105
Alignment:
Q  390 tccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataa 489  Q
    ||||||||| ||||||| |||| |||||  |||| ||||||| ||| |||||||||||||||| ||||||||||| ||||||||||| ||||||||| ||    
T  6129218 tccgtttcataatacttatcgcctttgatgaaattacacatatcaagaaatcaaataaattttgttatttttgataaaattctttgtattttttctacaa 6129119  T
Q  490 tacccttaatcatt 503  Q
    ||||||||||||||    
T  6129118 tacccttaatcatt 6129105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 393 - 493
Target Start/End: Complemental strand, 20714615 - 20714514
Alignment:
Q  393 gtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgt-tttttctataata 491  Q
    |||||||||||||||||| ||||||| || | ||||||||||| |||||||||||||||| ||||||||||||||| | | ||||| |||||||||||||    
T  20714615 gtttcacaatacttgtcgtttttgagaaatttacacataccaataaatcaaataaattttgttatttttgatgaaactatgtgtgtgtttttctataata 20714516  T
Q  492 cc 493  Q
    ||    
T  20714515 cc 20714514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 390 - 503
Target Start/End: Complemental strand, 26676836 - 26676723
Alignment:
Q  390 tccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataa 489  Q
    ||||||||||||||||| ||  ||||||  |||| |||||||||||  |||||||||||| || | |||||| ||||||||||| |||||||||||||||    
T  26676836 tccgtttcacaatacttatccattttgaagaaattacacataccaaggaatcaaataaatgttgtcattttttatgaaattcttcgtgttttttctataa 26676737  T
Q  490 tacccttaatcatt 503  Q
    |||||||| |||||    
T  26676736 tacccttactcatt 26676723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 282 - 390
Target Start/End: Original strand, 7114347 - 7114458
Alignment:
Q  282 tatttaatgatcgactttatgtattatgtagtttaaattttgaatgatcaattttt-gtttattacaacttaaatg--atgtattcaatatcatttatat 378  Q
    |||||||||||| ||||| | ||||||||| |||||||||||||||||| |||||| |||||||||||||||||||   ||||| |||||| ||||||||    
T  7114347 tatttaatgatcaactttttatattatgtaatttaaattttgaatgatcgatttttagtttattacaacttaaatgtattgtatgcaatataatttatat 7114446  T
Q  379 attttacttcat 390  Q
    |||||| |||||    
T  7114447 attttagttcat 7114458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 281 - 384
Target Start/End: Complemental strand, 43335416 - 43335310
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttgaatgatcaattttt-gtttattacaacttaaa--tgatgtattcaatatcatttata 377  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||| || ||||||||||||||  || ||||| |||||| ||| |||    
T  43335416 gtatttaatgatcgactttatatattatgtagtttaaattttgaatgatcggtttttggtatattacaacttaaatgtgttgtatgcaatatgattcata 43335317  T
Q  378 tatttta 384  Q
    |||||||    
T  43335316 tatttta 43335310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 282 - 387
Target Start/End: Original strand, 16401151 - 16401259
Alignment:
Q  282 tatttaatgatcgactttatgtattatgtagtttaaattttgaatgatcaatttt-tgtttattacaacttaaa--tgatgtattcaatatcatttatat 378  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||| || |||||  |||||||||||||||||  || ||||| |||||| ||||||||    
T  16401151 tatttaatgatcgaatttatttattatgtagtttaaattttgaatgttcgattttcggtttattacaacttaaatgtgttgtatgcaatatgatttatat 16401250  T
Q  379 attttactt 387  Q
    |||| ||||    
T  16401251 atttaactt 16401259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 383 - 503
Target Start/End: Original strand, 19692723 - 19692843
Alignment:
Q  383 tacttcatccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttt 482  Q
    |||||| || ||||||||||| || ||  ||||||  |||| | ||||||||| ||||||||||||| || | |||||| ||||||||||||||||||||    
T  19692723 tacttcctctgtttcacaataattctccattttgaagaaattatacataccaagaaatcaaataaatgttgtcattttttatgaaattctttgtgttttt 19692822  T
Q  483 tctataatacccttaatcatt 503  Q
    ||||||||| ||||| |||||    
T  19692823 tctataatatccttactcatt 19692843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 383 - 503
Target Start/End: Original strand, 19703308 - 19703428
Alignment:
Q  383 tacttcatccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttt 482  Q
    |||||| || ||||||||||| || ||  ||||||  |||| | ||||||||| ||||||||||||| || | |||||| ||||||||||||||||||||    
T  19703308 tacttcctctgtttcacaataattctccattttgaagaaattatacataccaagaaatcaaataaatgttgtcattttttatgaaattctttgtgttttt 19703407  T
Q  483 tctataatacccttaatcatt 503  Q
    ||||||||| ||||| |||||    
T  19703408 tctataatatccttactcatt 19703428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 437 - 498
Target Start/End: Original strand, 1988089 - 1988150
Alignment:
Q  437 aaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaa 498  Q
    |||||||||||||||||||||||||||||||||| | | ||| |||||||||||||||||||    
T  1988089 aaatcaaataaattttattatttttgatgaaattatgtatgtgttttctataatacccttaa 1988150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 390 - 503
Target Start/End: Original strand, 44568844 - 44568957
Alignment:
Q  390 tccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataa 489  Q
    ||||||||| ||||| ||||  ||||||  ||||  |||  ||||||||| |||||||||||| |||||||| |||||| | | ||||| ||||||||||    
T  44568844 tccgtttcaaaatacatgtccattttgaagaaattgcactaaccaaaaaaccaaataaattttgttattttttatgaaaatatgtgtgtgttttctataa 44568943  T
Q  490 tacccttaatcatt 503  Q
    ||||||||||||||    
T  44568944 tacccttaatcatt 44568957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 21310473 - 21310545
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  21310473 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatt 21310545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 24706476 - 24706404
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  24706476 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatt 24706404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 25704699 - 25704771
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  25704699 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatt 25704771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 427 - 503
Target Start/End: Original strand, 32543525 - 32543600
Alignment:
Q  427 acataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    |||||| || ||| ||||||| |||| ||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  32543525 acatactaagaaaccaaataatttttgttaattttgatgaaattctttgtgtttttt-tataatacccttaatcatt 32543600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 40122714 - 40122642
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||||||| |||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||| ||||    
T  40122714 accaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatt 40122642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 281 - 384
Target Start/End: Original strand, 44504844 - 44504950
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttgaatgatcaatttttg-tttattacaacttaaa--tgatgtattcaatatcatttata 377  Q
    |||| |||| ||||||||||| |||||||||||||||||||| ||||||  ||||||| |||||||| |||||||  || |||||  ||||| |||||||    
T  44504844 gtatgtaatcatcgactttatatattatgtagtttaaattttaaatgattgatttttgatttattacgacttaaatgtgttgtatgtaatatgatttata 44504943  T
Q  378 tatttta 384  Q
    |||||||    
T  44504944 tatttta 44504950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 442 - 503
Target Start/End: Original strand, 12071620 - 12071681
Alignment:
Q  442 aaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  12071620 aaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatt 12071681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 14797344 - 14797296
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttgaatgat 329  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||    
T  14797344 gtatgtaatgatcgactttatatattatgtagtttaaattttgaatgat 14797296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 21661764 - 21661692
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||||||||||||||||||| | | ||||| |||||||||||||| |||| ||||    
T  21661764 accaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaaccatt 21661692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 22321496 - 22321424
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| |||||||| |||||| | | ||||| ||||||||||||||||||||||||    
T  22321496 accaagaaaccaaataaattttgttattttttatgaaaatatgtgtgtgttttctataatacccttaatcatt 22321424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 338
Target Start/End: Complemental strand, 37465993 - 37465942
Alignment:
Q  287 aatgatcgactttatgtattatgtagtttaaattttgaatgatcaatttttg 338  Q
    ||||||||||||||| |||||||||||||||||||||||||||  |||||||    
T  37465993 aatgatcgactttatatattatgtagtttaaattttgaatgattgatttttg 37465942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 445 - 503
Target Start/End: Complemental strand, 34324797 - 34324739
Alignment:
Q  445 taaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    |||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  34324797 taaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatt 34324739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 441 - 499
Target Start/End: Original strand, 50767922 - 50767980
Alignment:
Q  441 caaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaat 499  Q
    |||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||    
T  50767922 caaataaattttgttatttttgatgaaaatatatgtgtgttttctataatacccttaat 50767980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 282 - 346
Target Start/End: Original strand, 55405121 - 55405186
Alignment:
Q  282 tatttaatgatcgactttatgtattatgtagtttaaattttgaatgatcaattttt-gtttattac 346  Q
    |||||||| ||||| || |||||||||| | ||||||||||||||||||||||||| |||||||||    
T  55405121 tatttaattatcgatttgatgtattatgcactttaaattttgaatgatcaatttttggtttattac 55405186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 431 - 499
Target Start/End: Original strand, 14261092 - 14261160
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaat 499  Q
    ||||| ||| |||||||||||| ||||||||||| ||| | | ||||| ||||||||||||||||||||    
T  14261092 accaagaaaccaaataaattttgttatttttgataaaaatatgtgtgtgttttctataatacccttaat 14261160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 21670528 - 21670456
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| |||||||||||||| |||| ||||    
T  21670528 accaagaaaccaaataaatttttttatttttgatgaaaatatgtgtgtgttttctataatacctttaaccatt 21670456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 443 - 499
Target Start/End: Complemental strand, 34284234 - 34284178
Alignment:
Q  443 aataaattttattatttttgatgaaattctttgtgttttttctataatacccttaat 499  Q
    |||||||||| ||| ||||||||||| | ||||| ||||||||||||||||||||||    
T  34284234 aataaattttgttacttttgatgaaactatttgtattttttctataatacccttaat 34284178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 431 - 470
Target Start/End: Original strand, 31892286 - 31892325
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaatt 470  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  31892286 accaagaaatcaaataaattttattatttttgatgaaatt 31892325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 24535184 - 24535134
Alignment:
Q  307 atgtagtttaaattttgaatgatcaattttt-gtttattacaacttaaatg 356  Q
    |||||||||||||||||||||||| |||||| || ||||||||||||||||    
T  24535184 atgtagtttaaattttgaatgatcgatttttggtgtattacaacttaaatg 24535134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 55405100 - 55405137
Alignment:
Q  224 agcgtaaaatgtcactttaaatatttaatgatcgattt 261  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  55405100 agcgtaaaatgtcactttaaatatttaattatcgattt 55405137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 20249241 - 20249170
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| |||||||||| |||||| | |||| | |||||||||||||||||| ||||    
T  20249241 accaagaaaccaaataaattttgttatttttgaagaaattatgtgtg-tgtttctataatacccttaaccatt 20249170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 493
Target Start/End: Complemental strand, 18507469 - 18507430
Alignment:
Q  454 ttatttttgatgaaattctttgtgttttttctataatacc 493  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  18507469 ttatttttgatgaaattttgtgtgttttttctataatacc 18507430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 382 - 491
Target Start/End: Original strand, 18396694 - 18396803
Alignment:
Q  382 ttacttcatccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgtttt 481  Q
    ||||||||||| ||||||||||||||||||||||||| || | |||||||| ||||||| ||||||||||| |||||||| |||||||| | |||| |||    
T  18396694 ttacttcatccatttcacaatacttgtcgcttttgagaaatttacacatactaaaaaattaaataaattttgttattttttatgaaattatgtgtggttt 18396793  T
Q  482 ttctataata 491  Q
    ||||||||||    
T  18396794 ttctataata 18396803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 389 - 503
Target Start/End: Original strand, 3657083 - 3657197
Alignment:
Q  389 atccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctata 488  Q
    ||||||| |||||||||||||||||||||| || | | ||||||||| |||||||||||||||| |||||||| |||||||| | | |||||||||||||    
T  3657083 atccgttccacaatacttgtcgcttttgaggaatttatacataccaagaaatcaaataaattttgttatttttaatgaaattttgtatgttttttctata 3657182  T
Q  489 atacccttaatcatt 503  Q
    ||| |||||| ||||    
T  3657183 ataaccttaaccatt 3657197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 281 - 387
Target Start/End: Complemental strand, 47074496 - 47074388
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttgaatgatcaattttt-gtttattacaacttaaa--tgatgtattcaatatcatttata 377  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||  || || || |||||| |||||||    
T  47074496 gtatttaatgatcgactttatatattatgtagtttaaattttgaatgatcaatttttggtttattacaa-ttaaatgtgttgcatgcaatataatttata 47074398  T
Q  378 tattttactt 387  Q
    ||||||||||    
T  47074397 tattttactt 47074388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 376 - 491
Target Start/End: Complemental strand, 51065040 - 51064925
Alignment:
Q  376 tatattttacttcatccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttg 475  Q
    ||||| ||||| | ||||||||||||||||||||  |||| |  |||| |||||||||||  |||||||||||| || | ||||||||||||||||||||    
T  51065040 tatatattactccctccgtttcacaatacttgtccattttaaagaaattacacataccaaggaatcaaataaatgttgtcatttttgatgaaattctttg 51064941  T
Q  476 tgttttttctataata 491  Q
    ||||||||||||||||    
T  51064940 tgttttttctataata 51064925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 119 - 247
Target Start/End: Original strand, 8919894 - 8920026
Alignment:
Q  119 caatttcaaccattcttgtt---tacaaattgttaaattgaaatttaac-tggttgaatttgatcaatttgtttctttgcaacaaaaaagttaatgatcg 214  Q
    ||||||||||||||||||||   ||||| |||||||||||||||  ||  |||||| | ||||| ||||| ||||||||||| | ||| |||||||||||    
T  8919894 caatttcaaccattcttgttcattacaatttgttaaattgaaataaaaaatggttgcaattgataaatttatttctttgcaatagaaatgttaatgatcg 8919993  T
Q  215 actttaatgagcgtaaaatgtcactttaaatat 247  Q
    |||||||| |||||||||| |||||||||||||    
T  8919994 actttaataagcgtaaaatatcactttaaatat 8920026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 382 - 497
Target Start/End: Complemental strand, 34459000 - 34458886
Alignment:
Q  382 ttacttcatccgtttcacaatacttgtcgcttttg-agtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttt 480  Q
    ||||| ||||||||||||||||||||||| ||||  || |||| ||||||||||| ||||||||||||||||  ||||||| |||||||||  |||||||    
T  34459000 ttactccatccgtttcacaatacttgtcgtttttttaggaaattacacataccaagaaatcaaataaatttttctattttttatgaaattc--tgtgttt 34458903  T
Q  481 tttctataataccctta 497  Q
    ||||||||||| |||||    
T  34458902 tttctataataacctta 34458886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 281 - 383
Target Start/End: Complemental strand, 3288180 - 3288075
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttgaatgatcaattttt-gtttattacaacttaaa--tgatgtattcaatatcatttata 377  Q
    ||||||||||||||||||||| ||| |||| ||||||||||| |||||| ||||||| |||||||||||||||||  || | ||| |||||| |||||||    
T  3288180 gtatttaatgatcgactttatatatcatgtggtttaaattttaaatgattaatttttggtttattacaacttaaatgtgttatatgcaatataatttata 3288081  T
Q  378 tatttt 383  Q
    ||||||    
T  3288080 tatttt 3288075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 390 - 491
Target Start/End: Complemental strand, 40261542 - 40261440
Alignment:
Q  390 tccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtg-ttttttctata 488  Q
    ||||||||||||||| ||| ||||||||| || | ||||||||||| |||||||||||||||| ||| |||||||||||||   |||| |||||||||||    
T  40261542 tccgtttcacaatacatgttgcttttgagaaatttacacataccaagaaatcaaataaattttgttaattttgatgaaattgcgtgtgtttttttctata 40261443  T
Q  489 ata 491  Q
    |||    
T  40261442 ata 40261440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 383 - 503
Target Start/End: Original strand, 25929114 - 25929232
Alignment:
Q  383 tacttcatccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttt 482  Q
    |||| |||| |||||||||||||| ||||||||||  || | |||||||||||||||| ||||||||||| ||| ||||||| ||||||  |||||||||    
T  25929114 tactccatctgtttcacaatacttatcgcttttgaagaatttacacataccaaaaaattaaataaattttgttaattttgattaaattc--tgtgttttt 25929211  T
Q  483 tctataatacccttaatcatt 503  Q
    ||||  ||| |||||| ||||    
T  25929212 tctacgatatccttaaccatt 25929232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 382 - 497
Target Start/End: Complemental strand, 1838105 - 1837992
Alignment:
Q  382 ttacttcatccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgtttt 481  Q
    ||||| ||||||||||||| || || ||| |||| |  |||| |||||||  || |||||||||||||||| ||||||||||||||||  | ||||||||    
T  1838105 ttactccatccgtttcacactatttatcgttttttaagaaattacacatattaagaaatcaaataaattttgttatttttgatgaaat--tatgtgtttt 1838008  T
Q  482 ttctataataccctta 497  Q
    ||||||||||||||||    
T  1838007 ttctataataccctta 1837992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 281 - 356
Target Start/End: Original strand, 4692733 - 4692808
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttgaatgatcaatttttg-tttattacaacttaaatg 356  Q
    ||||||||||||||||||||| |||||||||||||| | ||||||||||| ||||||| ||||||||||||||||||    
T  4692733 gtatttaatgatcgactttatatattatgtagtttaca-tttgaatgatcgatttttgatttattacaacttaaatg 4692808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 33082793 - 33082865
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| |||||||||||||||| ||||||||||||||||| | ||||| ||||||||||||||||||| ||||    
T  33082793 accaagaaatcaaataaattttgttatttttgatgaaattatgtgtgtattttctataatacccttaaccatt 33082865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 40783886 - 40783814
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| |||||||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  40783886 accaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatt 40783814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 388 - 498
Target Start/End: Original strand, 52477970 - 52478081
Alignment:
Q  388 catccgtttcacaatacttgtcgcttttgagtaa---atcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttc 484  Q
    |||| |||||||||||||||||| ||||||  ||   || | || |||||| |||||||||||||||| ||||||||||||||||  |||||||||||||    
T  52477970 catctgtttcacaatacttgtcgtttttgatgaatttattatacgtaccaagaaatcaaataaattttgttatttttgatgaaat--tttgtgttttttc 52478067  T
Q  485 tataatacccttaa 498  Q
    ||||||| ||||||    
T  52478068 tataataaccttaa 52478081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 306 - 384
Target Start/End: Complemental strand, 51064755 - 51064674
Alignment:
Q  306 tatgtagtttaaattttgaatgatcaatttttg-tttattacaacttaaatg--atgtattcaatatcatttatatatttta 384  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||   ||||| |||||| ||||||||||||||    
T  51064755 tatgtagtttaaattttgaatgatcgatttttgatttattacaacttaaatgtattgtatgcaatataatttatatatttta 51064674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 390 - 503
Target Start/End: Complemental strand, 24772175 - 24772062
Alignment:
Q  390 tccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataa 489  Q
    ||||||||| ||||| ||||  ||||||  ||||  |||  ||||| ||| |||||||||||| ||||||||||||||||| | ||||| ||||||||||    
T  24772175 tccgtttcaaaatacatgtccattttgaagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaattatgtgtgtattttctataa 24772076  T
Q  490 tacccttaatcatt 503  Q
    ||||||||| ||||    
T  24772075 tacccttaaccatt 24772062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 390 - 495
Target Start/End: Complemental strand, 31061723 - 31061618
Alignment:
Q  390 tccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataa 489  Q
    ||||||||| |||| |||||||||||||| || | |||||||| ||||||| ||| |||  || |||||||| |||||||| | ||||||||||| ||||    
T  31061723 tccgtttcataatatttgtcgcttttgagaaatttacacatacaaaaaaattaaaaaaaaattgttattttttatgaaattatgtgtgttttttccataa 31061624  T
Q  490 taccct 495  Q
    ||||||    
T  31061623 taccct 31061618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 281 - 356
Target Start/End: Original strand, 181554 - 181630
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttgaatgatcaattttt-gtttattacaacttaaatg 356  Q
    |||| |||||||| | ||||| |||||||||||||||||||||||||||| |||||| ||||||||| |||||||||    
T  181554 gtatgtaatgatcaattttatatattatgtagtttaaattttgaatgatcgatttttggtttattacgacttaaatg 181630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 284381 - 284453
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  284381 accaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgttttctataatacccttaatcatt 284453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 392 - 472
Target Start/End: Complemental strand, 14352028 - 14351948
Alignment:
Q  392 cgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattct 472  Q
    ||||||| ||||||||||||||||||| || | || |||||||| ||| |||||||||||| ||||||||||||| |||||    
T  14352028 cgtttcataatacttgtcgcttttgagaaatttacgcataccaagaaaacaaataaattttgttatttttgatgatattct 14351948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 23045508 - 23045436
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  23045508 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatt 23045436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 46771685 - 46771757
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| |||| ||||||||||| ||||||||||||||||| | ||||| ||||||||||||||||||| ||||    
T  46771685 accaagaaattaaataaattttgttatttttgatgaaattatgtgtgtgttttctataatacccttaaccatt 46771757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 293 - 384
Target Start/End: Original strand, 27133131 - 27133225
Alignment:
Q  293 cgactttatgtattatgtagtttaaattttgaatgatcaatttttg-tttattacaacttaa--atgatgtattcaatatcatttatatatttta 384  Q
    ||||||||| ||||||||||||||||||||||||||||  |||||| |||||||| ||||||  ||| |||||| ||||| || |||||||||||    
T  27133131 cgactttatatattatgtagtttaaattttgaatgatcggtttttgatttattacgacttaaatatgttgtatttaatatgatctatatatttta 27133225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 441 - 503
Target Start/End: Original strand, 23526298 - 23526360
Alignment:
Q  441 caaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    |||||||||||| ||||||||||||||||| | ||||| ||||||||||||||||||| ||||    
T  23526298 caaataaattttgttatttttgatgaaattatgtgtgtgttttctataatacccttaaccatt 23526360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 321674 - 321746
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| |||||||||||| |||||||||||    
T  321674 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatatccttaatcatt 321746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 289 - 356
Target Start/End: Original strand, 8920029 - 8920097
Alignment:
Q  289 tgatcgactttatgtattatgtagtttaaattttgaatgatc-aatttttgtttattacaacttaaatg 356  Q
    |||| |||||||||||||||||| |||||||||||||||||| | |||  |||||||||||||||||||    
T  8920029 tgattgactttatgtattatgtaatttaaattttgaatgatcgactttcggtttattacaacttaaatg 8920097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 27211193 - 27211121
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| |||||||||| |||||| | ||||| ||||||||||||||||||| ||||    
T  27211193 accaagaaaccaaataaattttgttatttttgaggaaattatatgtgtgttttctataatacccttaaccatt 27211121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 437 - 503
Target Start/End: Complemental strand, 47038073 - 47038009
Alignment:
Q  437 aaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    |||||||||||||||| |||||||||||||||   | ||||| ||||||||||||||||||||||||    
T  47038073 aaatcaaataaattttgttatttttgatgaaa--atatgtgtgttttctataatacccttaatcatt 47038009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 437 - 491
Target Start/End: Original strand, 1749361 - 1749415
Alignment:
Q  437 aaatcaaataaattttattatttttgatgaaattctttgtgttttttctataata 491  Q
    |||||||||||||||| ||||||||||||||||| | ||||| ||||||||||||    
T  1749361 aaatcaaataaattttgttatttttgatgaaattatatgtgtgttttctataata 1749415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 503
Target Start/End: Complemental strand, 52037348 - 52037279
Alignment:
Q  432 ccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    |||||||| |||||||||||||||||||||||| ||||  | ||||| ||||||||||||| ||||| ||||    
T  52037348 ccaaaaaaccaaataaattttattatttttgataaaat--tatgtgtgttttctataatactcttaaccatt 52037279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 282 - 337
Target Start/End: Complemental strand, 12307180 - 12307125
Alignment:
Q  282 tatttaatgatcgactttatgtattatgtagtttaaattttgaatgatcaattttt 337  Q
    |||||||| ||||| ||||||||||||| | |||||||||||||||||| ||||||    
T  12307180 tatttaattatcgattttatgtattatgcactttaaattttgaatgatcgattttt 12307125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 383
Target Start/End: Complemental strand, 16763966 - 16763877
Alignment:
Q  297 tttatgtattatgtagtttaaattttgaatga-tcaatttttgtttattacaacttaaatg--atgtattcaatatcatttatatatttt 383  Q
    ||||| ||||||||||||||||||||||| || ||  |||| ||||||||| |||||||||   ||||| |||||| |||||||||||||    
T  16763966 tttatatattatgtagtttaaattttgaacgattcgtttttggtttattacgacttaaatgtattgtatgcaatatgatttatatatttt 16763877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 503
Target Start/End: Complemental strand, 27143278 - 27143168
Alignment:
Q  394 tttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtg-ttttttctataatac 492  Q
    ||||||||||||| | |||||| || || | ||| ||  ||| |||||||||||||||| |||||||||| |||||||  || | ||||||||||||||     
T  27143278 tttcacaatacttatagcttttaaggaattaacaaatgtcaagaaatcaaataaattttgttatttttgaggaaattccgtgagtttttttctataatat 27143179  T
Q  493 ccttaatcatt 503  Q
     ||||||||||    
T  27143178 tcttaatcatt 27143168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 435 - 472
Target Start/End: Original strand, 38490923 - 38490960
Alignment:
Q  435 aaaaatcaaataaattttattatttttgatgaaattct 472  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  38490923 aaaaatcaaataaattttattattttttatgaaattct 38490960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 8919820 - 8919868
Alignment:
Q  18 aatatagggaaataaacaataaaatatatacatatggtacataattgat 66  Q
    ||||||| |||||||||||| ||||| ||||||||| ||||||||||||    
T  8919820 aatatagagaaataaacaatgaaatacatacatatgatacataattgat 8919868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 2622204 - 2622133
Alignment:
Q  138 ttacaaattgttaaattgaaatttaa-ctggttgaatttgatcaatttgtttctttgcaacaaaaaagttaa 208  Q
    ||||| ||||||||| ||||||| || ||||||||| ||||| |||||  |||||||||||| |||||||||    
T  2622204 ttacacattgttaaagtgaaattaaaactggttgaaattgataaattttcttctttgcaacataaaagttaa 2622133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 475
Target Start/End: Complemental strand, 28437465 - 28437418
Alignment:
Q  428 cataccaaaaaatcaaataaattttattatttttgatgaaattctttg 475  Q
    |||||||||||||| |||||||||  ||||| ||||||||||||||||    
T  28437465 cataccaaaaaatctaataaatttggttattcttgatgaaattctttg 28437418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 503
Target Start/End: Complemental strand, 31004017 - 31003943
Alignment:
Q  426 cacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    |||| ||||| |||||||||||||||||||   ||| |||||| | | ||| ||||||||||||||||||||| ||||    
T  31004017 cacacaccaagaaatcaaataaattttatt---tttaatgaaagtatgtgtattttttctataatacccttaaccatt 31003943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 437 - 483
Target Start/End: Complemental strand, 40052681 - 40052635
Alignment:
Q  437 aaatcaaataaattttattatttttgatgaaattctttgtgtttttt 483  Q
    |||||||||||||||| || ||||||| |||||||| ||||||||||    
T  40052681 aaatcaaataaattttgttgtttttgacgaaattctatgtgtttttt 40052635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 3288369 - 3288315
Alignment:
Q  105 tttgcttcctttgccaatttcaaccattcttgt---ttacaaattgttaaattga 156  Q
    ||||||||||||| ||||||||| |||||||||   ||||| |||||||||||||    
T  3288369 tttgcttcctttgtcaatttcaatcattcttgttcattacatattgttaaattga 3288315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 37914936 - 37914900
Alignment:
Q  26 gaaataaacaataaaatatatacatatggtacataat 62  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  37914936 gaaataaacaatgaaatatatacatatggtacgtaat 37914900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 383 - 503
Target Start/End: Original strand, 28562421 - 28562542
Alignment:
Q  383 tacttcatccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtg-tttt 481  Q
    |||||| ||||||||| ||||||||||  ||||||  |||| |||||||||||  |||||||||||| || | |||||||||||||||||||||| ||||    
T  28562421 tacttcctccgtttcaaaatacttgtccattttgaagaaattacacataccaaggaatcaaataaatgttgtcatttttgatgaaattctttgtgttttt 28562520  T
Q  482 ttctataatacccttaatcatt 503  Q
    |||||||||||||||| |||||    
T  28562521 ttctataatacccttactcatt 28562542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 281 - 384
Target Start/End: Complemental strand, 35538809 - 35538703
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttgaatgatcaattt-ttgtttattacaacttaaatga--tgtattcaatatcatttata 377  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||  ||||||| | ||||||||||||||||||||  ||||| || ||| |||||||    
T  35538809 gtatttaatgatcgactttatgtattatgtagtttaaactttgcatattcaatttatggtttattacaacttaaatgagttgtatgcagtattatttata 35538710  T
Q  378 tatttta 384  Q
    |||||||    
T  35538709 tatttta 35538703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 383 - 495
Target Start/End: Original strand, 28567919 - 28568032
Alignment:
Q  383 tacttcatccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgt-ttt 481  Q
    |||||| ||||||||| ||||||||||  ||||||  |||| |||||||||||  |||||||||||| || | |||||| |||||||||||||||| |||    
T  28567919 tacttcctccgtttcaaaatacttgtccattttgaagaaattacacataccaatgaatcaaataaatgttgtcattttttatgaaattctttgtgtcttt 28568018  T
Q  482 ttctataataccct 495  Q
    ||||||||||||||    
T  28568019 ttctataataccct 28568032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 383 - 495
Target Start/End: Original strand, 28575512 - 28575625
Alignment:
Q  383 tacttcatccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgt-ttt 481  Q
    |||||| ||||||||| ||||||||||  ||||||  |||| |||||||||||  |||||||||||| || | |||||| |||||||||||||||| |||    
T  28575512 tacttcctccgtttcaaaatacttgtccattttgaagaaattacacataccaatgaatcaaataaatgttgtcattttttatgaaattctttgtgtcttt 28575611  T
Q  482 ttctataataccct 495  Q
    ||||||||||||||    
T  28575612 ttctataataccct 28575625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 390 - 503
Target Start/End: Original strand, 35866621 - 35866734
Alignment:
Q  390 tccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataa 489  Q
    ||||||||||||||||||||  |||| |  |||| | | ||||||| |||| | |||||| || |||||||| |||||||||||||||||||||||||||    
T  35866621 tccgtttcacaatacttgtccattttaaagaaattatatataccaagaaattagataaatgttgttatttttcatgaaattctttgtgttttttctataa 35866720  T
Q  490 tacccttaatcatt 503  Q
    ||||||||| ||||    
T  35866721 tacccttaaacatt 35866734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 398 - 503
Target Start/End: Complemental strand, 13881217 - 13881111
Alignment:
Q  398 acaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtg-ttttttctataataccctt 496  Q
    ||||||||| || |||||||| || | | | |||| ||||||||||||||||||| ||||||||||||||||| | || | |||||||||||||||||||    
T  13881217 acaatacttctcacttttgaggaatttataaatacaaaaaaatcaaataaattttgttatttttgatgaaattgtgtgcgtttttttctataataccctt 13881118  T
Q  497 aatcatt 503  Q
    |||||||    
T  13881117 aatcatt 13881111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 383 - 483
Target Start/End: Complemental strand, 30906967 - 30906867
Alignment:
Q  383 tacttcatccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttt 482  Q
    |||||| |||||||||||||||||||||||||  || || | ||||||| ||| |||||||||||||||| |||||||| |||||||| | || ||||||    
T  30906967 tacttcttccgtttcacaatacttgtcgctttacaggaatttacacatatcaagaaatcaaataaattttgttattttttatgaaattttgtgagttttt 30906868  T
Q  483 t 483  Q
    |    
T  30906867 t 30906867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 384
Target Start/End: Original strand, 20099060 - 20099164
Alignment:
Q  282 tatttaatgatcgactttatgtattatgtagtttaaattttgaatgatcaatttttg-tttattacaacttaaatg--atgtattcaatatcatttatat 378  Q
    ||||||||||| |||||||| ||||||||||||| |||||||||||||| ||||||| || |||||||||||||||   ||||| |||||| | ||||||    
T  20099060 tatttaatgattgactttatatattatgtagttt-aattttgaatgatcgatttttgattcattacaacttaaatgtattgtatgcaatatgaattatat 20099158  T
Q  379 atttta 384  Q
    ||||||    
T  20099159 atttta 20099164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 389 - 489
Target Start/End: Complemental strand, 26629281 - 26629182
Alignment:
Q  389 atccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaa-tcaaataaattttattatttttgatgaaattctttgtgttttttctat 487  Q
    |||||||||||||||| ||| ||||||||| |||| |||||||  |||||| ||||||||||||| |||| |||||||||||  | ||||||||||||||    
T  26629281 atccgtttcacaatacgtgttgcttttgaggaaattacacataataaaaaaatcaaataaattttgttatgtttgatgaaat--tatgtgttttttctat 26629184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 2540160 - 2540088
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  2540160 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatt 2540088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 3585499 - 3585571
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  3585499 accaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgttttctataatacccttaatcatt 3585571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 11174452 - 11174380
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  11174452 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatt 11174380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 11646554 - 11646482
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  11646554 accaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgttttctataatacccttaatcatt 11646482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 36068128 - 36068200
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||||||| |||||||||||| |||||||| |||||| | | ||||| ||||||||||||||||||||||||    
T  36068128 accaaaaaaccaaataaattttgttatttttaatgaaaatatatgtgtgttttctataatacccttaatcatt 36068200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 40058532 - 40058460
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  40058532 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatt 40058460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 338
Target Start/End: Original strand, 33363779 - 33363836
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttgaatgatcaatttttg 338  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||  |||||||    
T  33363779 gtatgtaatgatcgactttatatattatgtagtttaaattttgaatgattgatttttg 33363836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 390 - 503
Target Start/End: Original strand, 37345578 - 37345691
Alignment:
Q  390 tccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataa 489  Q
    ||||||||| ||||| ||||  ||||||  ||||  |||  ||||| ||| |||||||||||| |||||||| |||||| | | ||||| ||||||||||    
T  37345578 tccgtttcaaaatacatgtccattttgaagaaattgcaccaaccaagaaaccaaataaattttgttatttttaatgaaaatatgtgtgtgttttctataa 37345677  T
Q  490 tacccttaatcatt 503  Q
    ||||||||||||||    
T  37345678 tacccttaatcatt 37345691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 395 - 503
Target Start/End: Original strand, 37510280 - 37510386
Alignment:
Q  395 ttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataataccc 494  Q
    ||||||||||| ||||| |||||| || | |||  |||||| |||  ||||||||||| |||||||| || ||||||||| | ||||||| |||||||||    
T  37510280 ttcacaatactcgtcgcctttgagaaatttaca--taccaagaaactaaataaattttgttatttttaataaaattctttctattttttcaataataccc 37510377  T
Q  495 ttaatcatt 503  Q
    |||||||||    
T  37510378 ttaatcatt 37510386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 7146961 - 7147033
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| |||| |||||||||||||||||||    
T  7146961 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaatcatt 7147033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 281 - 329
Target Start/End: Original strand, 42809717 - 42809765
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttgaatgat 329  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||    
T  42809717 gtatgtaatgatcgactttatatattatgtagtttaaattttgaatgat 42809765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 30999750 - 30999680
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| |||||||||||||||   | ||||| ||||||||||||||||||||||||    
T  30999750 accaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctataatacccttaatcatt 30999680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 43275626 - 43275556
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| |||||||||||||||   | ||||| ||||||||||||||||||||||||    
T  43275626 accaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctataatacccttaatcatt 43275556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 470
Target Start/End: Complemental strand, 28326925 - 28326844
Alignment:
Q  392 cgtttcacaatacttgtcgc---ttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaatt 470  Q
    ||||||| |||||||||||    ||||||| || | ||| ||||||| |||||||||||||||| |||||||||||||||||    
T  28326925 cgtttcataatacttgtcgtcatttttgaggaatttacatataccaagaaatcaaataaattttgttatttttgatgaaatt 28326844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 491
Target Start/End: Original strand, 39151419 - 39151513
Alignment:
Q  394 tttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataata 491  Q
    ||||| |||||||||||||||| || || | ||| |||  ||||||||||||||| ||| ||||||||||||||||| | | | ||||||||||||||    
T  39151419 tttcataatacttgtcgcttttaagaaatttacatata--aaaaaatcaaataaactttgttatttttgatgaaattatgtat-ttttttctataata 39151513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 284 - 321
Target Start/End: Original strand, 39313121 - 39313158
Alignment:
Q  284 tttaatgatcgactttatgtattatgtagtttaaattt 321  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  39313121 tttaatgatcgactttatgtattatatagtttaaattt 39313158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 493
Target Start/End: Complemental strand, 30268620 - 30268552
Alignment:
Q  425 acacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacc 493  Q
    ||||||||||| ||| | |||||||||| ||| ||||| || |||| ||||| ||||||||||||||||    
T  30268620 acacataccaataaaactaataaattttgttacttttggtggaattatttgtcttttttctataatacc 30268552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 35538178 - 35538130
Alignment:
Q  18 aatatagggaaataaacaataaaatatatacatatggtacataattgat 66  Q
    |||||||  ||||||||||| ||||| ||||||||||||||||||||||    
T  35538178 aatatagaaaaataaacaatgaaatacatacatatggtacataattgat 35538130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 325
Target Start/End: Original strand, 18427738 - 18427777
Alignment:
Q  286 taatgatcgactttatgtattatgtagtttaaattttgaa 325  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  18427738 taatgatcgacttactgtattatgtagtttaaattttgaa 18427777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 324
Target Start/End: Original strand, 32382294 - 32382337
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttga 324  Q
    |||| |||||||||| ||||| ||||||||||||||||||||||    
T  32382294 gtatctaatgatcgaatttatatattatgtagtttaaattttga 32382337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 324
Target Start/End: Original strand, 32436249 - 32436292
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttga 324  Q
    |||| |||||||||| ||||| ||||||||||||||||||||||    
T  32436249 gtatctaatgatcgaatttatatattatgtagtttaaattttga 32436292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 40918958 - 40918888
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| |||||||| ||||||     ||||| ||||||||||||||||||||||||    
T  40918958 accaagaaaccaaataaattttgttattttttatgaaa--acatgtgtgttttctataatacccttaatcatt 40918888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 481
Target Start/End: Complemental strand, 20546510 - 20546466
Alignment:
Q  437 aaatcaaataaattttattatttttgatgaaattctttgtgtttt 481  Q
    |||| ||||||||||| ||||||||||||||||| | ||||||||    
T  20546510 aaattaaataaattttgttatttttgatgaaattatgtgtgtttt 20546466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 27035045 - 27035116
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| ||||||| |||| ||||||||||||||||| | | || | |||||||||||||||||| ||||    
T  27035045 accaagaaaccaaataattttttttatttttgatgaaattatgtctg-tgtttctataatacccttaaccatt 27035116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 9e-25; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 390 - 492
Target Start/End: Original strand, 14779786 - 14779888
Alignment:
Q  390 tccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataa 489  Q
    |||||||||||||| |||||||||||||  |||| ||||||| |   |||| ||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  14779786 tccgtttcacaatatttgtcgcttttgacaaaattacacatatcgtgaaattaaataaatttttttatttttgatgaaattatttgtgttttttctataa 14779885  T
Q  490 tac 492  Q
    |||    
T  14779886 tac 14779888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 382 - 492
Target Start/End: Original strand, 18078055 - 18078165
Alignment:
Q  382 ttacttcatccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgtttt 481  Q
    ||||| |||||||||||||||| ||||||||||| |  || | ||| |||||||||||||||||||||||| |||||||||||||| || ||||||  ||    
T  18078055 ttactccatccgtttcacaatatttgtcgcttttaaagaatttacaaataccaaaaaatcaaataaattttgttatttttgatgaatttttttgtggatt 18078154  T
Q  482 ttctataatac 492  Q
    |||||||||||    
T  18078155 ttctataatac 18078165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 390 - 503
Target Start/End: Complemental strand, 39562155 - 39562044
Alignment:
Q  390 tccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataa 489  Q
    |||||||||  ||||||||||||||| || |||| ||||||| |||||||||||||||||||| |||||||||| |||||| ||| |||||||||  |||    
T  39562155 tccgtttcatgatacttgtcgcttttaaggaaattacacatatcaaaaaatcaaataaattttgttatttttgaagaaattatttttgttttttc--taa 39562058  T
Q  490 tacccttaatcatt 503  Q
    ||||||||| ||||    
T  39562057 tacccttaaccatt 39562044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 393 - 484
Target Start/End: Complemental strand, 1002997 - 1002906
Alignment:
Q  393 gtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttc 484  Q
    |||||| ||||| ||||||||||||| | || |||||||| || ||||||||||||||||||||||||||||||||||| || |||||||||    
T  1002997 gtttcaaaatacatgtcgcttttgaggatattacacatactaagaaatcaaataaattttattatttttgatgaaattccttttgttttttc 1002906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 281 - 356
Target Start/End: Complemental strand, 5885435 - 5885359
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttgaatgatcaattttt-gtttattacaacttaaatg 356  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||   ||||| |||||||||||||||||||    
T  5885435 gtatttaatgatcgactttatatattatgtagtttaaattttgaatgattggtttttggtttattacaacttaaatg 5885359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 394 - 498
Target Start/End: Complemental strand, 35179201 - 35179097
Alignment:
Q  394 tttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacc 493  Q
    ||||||||||||| | | |||| || || | ||||||||||| |||| ||||||||||| ||||||||||||||||| | |||||||||||||||||| |    
T  35179201 tttcacaatacttatggatttttagaaatttacacataccaagaaatgaaataaattttgttatttttgatgaaattttgtgtgttttttctataataac 35179102  T
Q  494 cttaa 498  Q
    |||||    
T  35179101 cttaa 35179097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 282 - 384
Target Start/End: Original strand, 41318208 - 41318312
Alignment:
Q  282 tatttaatgatcgactttatgtattatgtagtttaaattttgaatgatc-aatttttgtttattacaacttaaatg-atgtattcaatatcatttatata 379  Q
    ||||||||||||| || ||| |||||||||||||||||||| ||||||| | ||||||||||||||||||||||||  | ||| |||||| |||||||||    
T  41318208 tatttaatgatcggctctatatattatgtagtttaaattttaaatgatcgattttttgtttattacaacttaaatgtgtttatgcaatatgatttatata 41318307  T
Q  380 tttta 384  Q
    |||||    
T  41318308 tttta 41318312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 391 - 497
Target Start/End: Original strand, 36447239 - 36447343
Alignment:
Q  391 ccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataat 490  Q
    |||||| ||||||||||||||||||||| |||| |||||||| || ||||||||| ||||||  ||||||| || |||||||||||  ||||||||||||    
T  36447239 ccgttttacaatacttgtcgcttttgaggaaattacacatactaagaaatcaaat-aattttgctatttttaataaaattctttgt-atttttctataat 36447336  T
Q  491 accctta 497  Q
    |||||||    
T  36447337 accctta 36447343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 37673966 - 37673894
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| |||||||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  37673966 accaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatt 37673894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 39938218 - 39938290
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  39938218 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatt 39938290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 1102551 - 1102623
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||| ||||    
T  1102551 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatt 1102623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 431 - 499
Target Start/End: Original strand, 3518956 - 3519024
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaat 499  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||    
T  3518956 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaat 3519024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 12969968 - 12969896
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||||| | ||| | ||||||||||||||||||| ||||    
T  12969968 accaagaaaccaaataaattttgttatttttgatgaaattatgtgtatattttctataatacccttaaccatt 12969896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 23366837 - 23366909
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| |||||||| |||||| | | ||||| ||||||||||||||||||||||||    
T  23366837 accaagaaaccaaataaattttgttattttttatgaaaatatgtgtgtgttttctataatacccttaatcatt 23366909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 450
Target Start/End: Original strand, 4917767 - 4917834
Alignment:
Q  383 tacttcatccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaatt 450  Q
    ||||||||||||||||||||| |||||||||||||| || | ||| ||| ||| ||||||||||||||    
T  4917767 tacttcatccgtttcacaatatttgtcgcttttgagaaatttacatatatcaacaaatcaaataaatt 4917834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 503
Target Start/End: Original strand, 1646348 - 1646407
Alignment:
Q  442 aaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||||||||| ||||||||||||||| | | ||||||||  ||||||||||||||||||||    
T  1646348 aaataaattttgttatttttgatgaaaatatgtgtgtttt--ctataatacccttaatcatt 1646407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 5088752 - 5088789
Alignment:
Q  224 agcgtaaaatgtcactttaaatatttaatgatcgattt 261  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  5088752 agcgtaaaatgtcactttaaatatttaattatcgattt 5088789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 346
Target Start/End: Original strand, 5088773 - 5088838
Alignment:
Q  282 tatttaatgatcgactttatgtattatgtagtttaaattttgaatgatcaattttt-gtttattac 346  Q
    |||||||| ||||| || |||||||||| | |||||||||||||||||| |||||| |||||||||    
T  5088773 tatttaattatcgatttgatgtattatgcactttaaattttgaatgatcgatttttggtttattac 5088838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 412 - 497
Target Start/End: Original strand, 19976361 - 19976445
Alignment:
Q  412 ttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataataccctta 497  Q
    ||||||| |||| || | |||||| ||||||||||||||||  || ||||||| ||||| | ||| ||||||||||||||||||||    
T  19976361 ttttgagaaaattacccgtaccaagaaatcaaataaattttggtacttttgataaaattatgtgt-ttttttctataataccctta 19976445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 437 - 482
Target Start/End: Complemental strand, 32840398 - 32840353
Alignment:
Q  437 aaatcaaataaattttattatttttgatgaaattctttgtgttttt 482  Q
    |||||||||||||||| ||||||||||||||||||| ||| |||||    
T  32840398 aaatcaaataaattttgttatttttgatgaaattctgtgttttttt 32840353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 497
Target Start/End: Original strand, 24777741 - 24777781
Alignment:
Q  457 tttttgatgaaattctttgtgttttttctataataccctta 497  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  24777741 ttttttatgaaattctttgtgttttttttataataccctta 24777781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 470
Target Start/End: Complemental strand, 37284778 - 37284700
Alignment:
Q  390 tccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaatt 470  Q
    ||||||||| ||||||| ||||||||||| || | ||| ||  ||| |||||||||||||||| |||||||| || |||||    
T  37284778 tccgtttcataatacttatcgcttttgagaaatttacatat--caataaatcaaataaattttgttattttttataaaatt 37284700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 400 - 492
Target Start/End: Original strand, 37780954 - 37781046
Alignment:
Q  400 aatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatac 492  Q
    |||| |||||| ||||||| || | |||||||| || |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37780954 aatagttgtcgtttttgaggaatttacacatactaagaaattaaataaattttattatttttgatgaaattctgtgtgttttttctataatac 37781046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 281 - 384
Target Start/End: Complemental strand, 14195317 - 14195211
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttgaatgatcaattttt-gtttattacaacttaaatga--tgtattcaatatcatttata 377  Q
    ||||||||  ||||||||||| |||||||||||||||||||| ||||||  |||||| ||||||||||||||||||||  ||||| |||||| |||||||    
T  14195317 gtatttaaaaatcgactttatatattatgtagtttaaattttaaatgattgatttttagtttattacaacttaaatgagttgtatgcaatatgatttata 14195218  T
Q  378 tatttta 384  Q
    |||||||    
T  14195217 tatttta 14195211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 437 - 497
Target Start/End: Complemental strand, 19897150 - 19897090
Alignment:
Q  437 aaatcaaataaattttattatttttgatgaaattctttgtgttttttctataataccctta 497  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  19897150 aaatcaaataaattttgttattttttatgaaattctttgtgttttttctataataccctta 19897090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 389 - 497
Target Start/End: Original strand, 24064230 - 24064338
Alignment:
Q  389 atccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctata 488  Q
    |||||||||||||||||||||| ||||||| |||| ||| |||  || |||| ||||||||||| |||| ||| || ||||||  |||||||||||||||    
T  24064230 atccgtttcacaatacttgtcgtttttgagaaaattacaaatattaataaattaaataaattttgttatattttataaaattcactgtgttttttctata 24064329  T
Q  489 ataccctta 497  Q
    |||||||||    
T  24064330 ataccctta 24064338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 389 - 481
Target Start/End: Complemental strand, 53559881 - 53559789
Alignment:
Q  389 atccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgtttt 481  Q
    |||||||||||||||||||| ||||||||  |||| ||||||| ||| ||| ||||||||| || ||||||||||||||||||| ||||||||    
T  53559881 atccgtttcacaatacttgttgcttttgaagaaattacacatatcaagaaaacaaataaatgttgttatttttgatgaaattctctgtgtttt 53559789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 281 - 384
Target Start/End: Original strand, 21496785 - 21496890
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttgaatgatcaattttt-gtttattacaacttaaa--tgatgtattcaatatcatttata 377  Q
    ||||||||||||||| ||||| | |||| |||||||||||||||||||||||||||| |||||||| ||||||||  || ||||| |||||| |||||||    
T  21496785 gtatttaatgatcgattttatatgttat-tagtttaaattttgaatgatcaatttttggtttattaaaacttaaatgtgttgtatgcaatatgatttata 21496883  T
Q  378 tatttta 384  Q
    |||||||    
T  21496884 tatttta 21496890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 383 - 497
Target Start/End: Complemental strand, 52805303 - 52805189
Alignment:
Q  383 tacttcatccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttt 482  Q
    |||||| |||||||||||||||  || |||||| || || | |||||||| ||||||| ||||||||||| | ||||||||||||||| ||||  |||||    
T  52805303 tacttcctccgtttcacaatacaggtagcttttaagaaatttacacatactaaaaaataaaataaattttgtcatttttgatgaaattgtttgcattttt 52805204  T
Q  483 tctataataccctta 497  Q
    |||||||||| ||||    
T  52805203 tctataatactctta 52805189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 390 - 487
Target Start/End: Original strand, 37293444 - 37293539
Alignment:
Q  390 tccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctat 487  Q
    ||||||||||||||||||||  ||||||  |||| |||||||||||  |||||||||||| || | ||||||||||||||||  ||||||||||||||    
T  37293444 tccgtttcacaatacttgtccattttgaagaaattacacataccaaggaatcaaataaatgttgtcatttttgatgaaattc--tgtgttttttctat 37293539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 383 - 503
Target Start/End: Original strand, 26105031 - 26105151
Alignment:
Q  383 tacttcatccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatga-aattctttgtgtttt 481  Q
    |||||||| ||||||| |||| || ||||||||||| || | ||||||||||| |||||||||||||||| |||||||| ||||   || ||||||||||    
T  26105031 tacttcatgcgtttcataatatttatcgcttttgaggaatttacacataccaataaatcaaataaattttgttatttttaatgatttttttttgtgtttt 26105130  T
Q  482 ttctataatacccttaatcatt 503  Q
    || || ||||||||||| ||||    
T  26105131 tt-tacaatacccttaaccatt 26105151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 292 - 356
Target Start/End: Complemental strand, 38000534 - 38000469
Alignment:
Q  292 tcgactttatgtattatgtagtttaaattttgaatgatcaattttt-gtttattacaacttaaatg 356  Q
    |||||||||| |||||||||||||||||||||||||||| |||||| || ||||||||||||||||    
T  38000534 tcgactttatatattatgtagtttaaattttgaatgatcgatttttggtatattacaacttaaatg 38000469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 198903 - 198975
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  198903 accaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgttttctataatacccttaatcatt 198975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 13364891 - 13364963
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  13364891 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatt 13364963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 19241897 - 19241825
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  19241897 accaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgttttctataatacccttaatcatt 19241825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 23088160 - 23088088
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  23088160 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatt 23088088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 403 - 503
Target Start/End: Original strand, 54086574 - 54086674
Alignment:
Q  403 acttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcat 502  Q
    |||||||  ||||||  |||| |||||| ||||  |||||||||||| || | ||| ||||||||||||||||| |||||||||||||||||||| ||||    
T  54086574 acttgtccattttgaagaaattacacatgccaaggaatcaaataaatgttgtcattattgatgaaattctttgtattttttctataatacccttactcat 54086673  T
Q  503 t 503  Q
    |    
T  54086674 t 54086674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 441 - 503
Target Start/End: Complemental strand, 46694329 - 46694267
Alignment:
Q  441 caaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    |||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  46694329 caaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatt 46694267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 425 - 490
Target Start/End: Complemental strand, 1455383 - 1455318
Alignment:
Q  425 acacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataat 490  Q
    |||||||| || |||||||||||||||| ||||||||||| ||||| ||||||||| |||||||||    
T  1455383 acacatactaagaaatcaaataaattttgttatttttgataaaattatttgtgtttcttctataat 1455318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 394 - 482
Target Start/End: Original strand, 30171751 - 30171837
Alignment:
Q  394 tttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttt 482  Q
    ||||| ||||||||||||||||||| || | | ||||| ||| |||||||||||||||| || |||||||||||||  |||||||||||    
T  30171751 tttcataatacttgtcgcttttgaggaatttatacatatcaagaaatcaaataaattttgttgtttttgatgaaat--tttgtgttttt 30171837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 281 - 329
Target Start/End: Original strand, 2736688 - 2736736
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttgaatgat 329  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||    
T  2736688 gtatgtaatgatcgactttatatattatgtagtttaaattttgaatgat 2736736  T

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Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 3383124 - 3383196
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||| ||||    
T  3383124 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaacatt 3383196  T

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Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 29375186 - 29375258
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||| ||||    
T  29375186 accaagaaaccaaataaattttcttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatt 29375258  T

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Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 281 - 329
Target Start/End: Original strand, 40925734 - 40925782
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttgaatgat 329  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||    
T  40925734 gtatgtaatgatcgactttatatattatgtagtttaaattttgaatgat 40925782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 43750185 - 43750257
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||||| | ||||| ||||||||||||| ||||| ||||    
T  43750185 accaagaaaccaaataaattttgttatttttgatgaaattatatgtgtgttttctataatacacttaaccatt 43750257  T

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Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 393 - 503
Target Start/End: Complemental strand, 18356134 - 18356024
Alignment:
Q  393 gtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatac 492  Q
    |||||||||||| | ||  ||||||  |||| |||||| ||||  ||| ||||| || || | | ||||| |||||||||||||||||||||||||||||    
T  18356134 gtttcacaatacatatccattttgaaaaaattacacatgccaaggaattaaatacatgttgtcagttttggtgaaattctttgtgttttttctataatac 18356035  T
Q  493 ccttaatcatt 503  Q
    ||||| |||||    
T  18356034 ccttactcatt 18356024  T

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Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 282 - 346
Target Start/End: Complemental strand, 19972021 - 19971956
Alignment:
Q  282 tatttaatgatcgactttatgtattatgtagtttaaattttgaatgatcaattttt-gtttattac 346  Q
    |||||||| ||||| ||||||||||||| | |||||||||||||||||| |||||| |||||||||    
T  19972021 tatttaattatcgattttatgtattatgcactttaaattttgaatgatcgatttttggtttattac 19971956  T

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Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 22126509 - 22126461
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttgaatgat 329  Q
    |||| |||||||| ||||||| |||||||||||||||||||||||||||    
T  22126509 gtatgtaatgatcaactttatatattatgtagtttaaattttgaatgat 22126461  T

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Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 297 - 384
Target Start/End: Original strand, 43946346 - 43946436
Alignment:
Q  297 tttatgtattatgtagtttaaattttgaatgatcaatttttg-tttattacaacttaaa--tgatgtattcaatatcatttatatatttta 384  Q
    ||||| |||||||||||||||||||||||||||| ||||||| ||||||   |||||||  || ||||  |||||| ||||||||||||||    
T  43946346 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatatttta 43946436  T

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Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 313 - 384
Target Start/End: Original strand, 54788994 - 54789068
Alignment:
Q  313 tttaaattttgaatgatcaattttt-gtttattacaacttaa--atgatgtattcaatatcatttatatatttta 384  Q
    |||||||||||||||||| |||||| ||||||||||||||||  ||| | ||||||||||  |||||||||||||    
T  54788994 tttaaattttgaatgatcgatttttggtttattacaacttaaatatgttatattcaatatggtttatatatttta 54789068  T

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Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 19972042 - 19972004
Alignment:
Q  224 agcgtaaaatgtcactttaaatatttaatgatcgatttt 262  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  19972042 agcgtaaaatgtcactttaaatatttaattatcgatttt 19972004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 431 - 499
Target Start/End: Original strand, 36881330 - 36881396
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaat 499  Q
    ||||| ||| |||||||||||| |||||||||||||||   | ||||| ||||||||||||||||||||    
T  36881330 accaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctataatacccttaat 36881396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 13702817 - 13702889
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| ||||||||||||  |||||||||||||||| | ||| | |||||||||||||| |||| ||||    
T  13702817 accaagaaaccaaataaattttgatatttttgatgaaattatatgtttgttttctataatacctttaaccatt 13702889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 487
Target Start/End: Complemental strand, 32835185 - 32835129
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctat 487  Q
    ||||| ||| |||||||||||| ||||||||||||||||| | ||||| ||||||||    
T  32835185 accaagaaaacaaataaattttgttatttttgatgaaattatgtgtgtgttttctat 32835129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 492
Target Start/End: Original strand, 44522495 - 44522548
Alignment:
Q  437 aaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatac 492  Q
    ||||||||||||||||||||||||| |||||||    |||||||||||||||||||    
T  44522495 aaatcaaataaattttattattttttatgaaat--catgtgttttttctataatac 44522548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 259
Target Start/End: Complemental strand, 8425337 - 8425302
Alignment:
Q  224 agcgtaaaatgtcactttaaatatttaatgatcgat 259  Q
    ||||||||||||||||||||||||||||| ||||||    
T  8425337 agcgtaaaatgtcactttaaatatttaattatcgat 8425302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 449 - 503
Target Start/End: Original strand, 17755221 - 17755275
Alignment:
Q  449 ttttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    |||| |||||||| ||||| || |||||||||||||||||||| | |||||||||    
T  17755221 tttttttattttttatgaatttatttgtgttttttctataatatctttaatcatt 17755275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 449 - 503
Target Start/End: Original strand, 19056541 - 19056595
Alignment:
Q  449 ttttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    |||| |||||||| ||||| || |||||||||||||||||||| | |||||||||    
T  19056541 tttttttattttttatgaatttatttgtgttttttctataatatctttaatcatt 19056595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 262
Target Start/End: Original strand, 21496765 - 21496803
Alignment:
Q  224 agcgtaaaatgtcactttaaatatttaatgatcgatttt 262  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  21496765 agcgtaaagtgtcactttaagtatttaatgatcgatttt 21496803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 384
Target Start/End: Original strand, 55121318 - 55121399
Alignment:
Q  306 tatgtagtttaaattttgaatgatcaatttttg-tttattacaacttaaa--tgatgtattcaatatcatttatatatttta 384  Q
    ||||| ||||| ||||||||||||| ||||||| |||||||||| |||||  || || || |||||| ||||||||||||||    
T  55121318 tatgttgtttagattttgaatgatcgatttttgatttattacaagttaaatgtgttgcatgcaatataatttatatatttta 55121399  T

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Target: scaffold0056 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 393 - 503
Target Start/End: Original strand, 70834 - 70944
Alignment:
Q  393 gtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatac 492  Q
    |||||| |||||| |||| |||| || || | ||||||| ||| |||||||||||||||| ||||||||||||||||||| |||||||||||| ||| ||    
T  70834 gtttcataatactcgtcgtttttcagaaatttacacatatcaagaaatcaaataaattttgttatttttgatgaaattctgtgtgttttttctgtaacac 70933  T
Q  493 ccttaatcatt 503  Q
    |||||| ||||    
T  70934 ccttaaccatt 70944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 281 - 384
Target Start/End: Complemental strand, 11893 - 11787
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttgaatgatcaattttt-gtttattacaacttaaa--tgatgtattcaatatcatttata 377  Q
    |||| |||| ||||| ||||| ||||||||||||||||||||||||||||  ||||| |||||||||||||||||  || | ||| |||||| |||||||    
T  11893 gtatctaattatcgattttatatattatgtagtttaaattttgaatgatcgttttttggtttattacaacttaaatgtgttatatgcaatatgatttata 11794  T
Q  378 tatttta 384  Q
    |||||||    
T  11793 tatttta 11787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1431 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 128 - 56
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  128 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatt 56  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 45502 - 45574
Alignment:
Q  431 accaaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    ||||| ||| |||||||||||| ||||||||||||||||| | ||||| ||||||||||||||||||| ||||    
T  45502 accaagaaaccaaataaattttgttatttttgatgaaattatgtgtgtattttctataatacccttaaccatt 45574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 383
Target Start/End: Original strand, 3543 - 3632
Alignment:
Q  297 tttatgtattatgtagtttaaattttgaatga-tcaatttttgtttattacaacttaaatg--atgtattcaatatcatttatatatttt 383  Q
    ||||| ||||||||||||||||||||||| || ||  |||| ||||||||| |||||||||   ||||| || ||| |||||||||||||    
T  3543 tttatatattatgtagtttaaattttgaacgattcgtttttggtttattacgacttaaatgtattgtatgcattatgatttatatatttt 3632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 433 - 503
Target Start/End: Complemental strand, 490 - 422
Alignment:
Q  433 caaaaaatcaaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    |||||||||||||||||||| ||||||||||| ||||| | |||||||||  |||||||||||||||||||    
T  490 caaaaaatcaaataaattttgttatttttgataaaattatgtgtgttttt--tataatacccttaatcatt 422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 281 - 329
Target Start/End: Original strand, 42387 - 42435
Alignment:
Q  281 gtatttaatgatcgactttatgtattatgtagtttaaattttgaatgat 329  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||    
T  42387 gtatgtaatgatcgactttatatattatgtagtttaaattttgaatgat 42435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 503
Target Start/End: Complemental strand, 65375 - 65320
Alignment:
Q  449 ttttattatttttgatgaaattctttgtg-ttttttctataatacccttaatcatt 503  Q
    |||||||||||||||||||||| | |||| ||||||||||||||||||||| ||||    
T  65375 ttttattatttttgatgaaattatatgtgtttttttctataatacccttaaccatt 65320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 503
Target Start/End: Original strand, 220 - 282
Alignment:
Q  441 caaataaattttattatttttgatgaaattctttgtgttttttctataatacccttaatcatt 503  Q
    |||||||||||| |||||||| |||||| | | ||||| ||||||||||||||||||| ||||    
T  220 caaataaattttgttattttttatgaaaatatgtgtgtgttttctataatacccttaaccatt 282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 383
Target Start/End: Complemental strand, 7812 - 7723
Alignment:
Q  297 tttatgtattatgtagtttaaattttgaatga-tcaatttttgtttattacaacttaaatg--atgtattcaatatcatttatatatttt 383  Q
    ||||| ||||||||||||||||||||||| || ||  |||| ||||||||| |||||||||   ||||| |||||| |||||||||||||    
T  7812 tttatatattatgtagtttaaattttgaacgattcgtttttggtttattacgacttaaatgtattgtatgcaatatgatttatatatttt 7723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0939 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0939
Description:

Target: scaffold0939; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 449
Target Start/End: Original strand, 935 - 994
Alignment:
Q  390 tccgtttcacaatacttgtcgcttttgagtaaatcacacataccaaaaaatcaaataaat 449  Q
    |||||||||||||| || ||||||||||| |||| |||||||  || |||||||||||||    
T  935 tccgtttcacaatatttatcgcttttgaggaaataacacatattaagaaatcaaataaat 994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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