View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20045_low_9 (Length: 459)
Name: NF20045_low_9
Description: NF20045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20045_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 17 - 444
Target Start/End: Complemental strand, 33357953 - 33357527
Alignment:
| Q |
17 |
caacaaattaatatgatcattagggttgacattagtaaatgtgagggtcacaaatctttaaaaacgtgtcgcatatttggaagctctctatgaagtactc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33357953 |
caacaaattaatatgatcattagggttgacattagtaaatgttcaggtcacaaatctttaaaa-cgtgtcgcatatttggaagctctctatgaagtactc |
33357855 |
T |
|
| Q |
117 |
ctattttatcactaccaactatacataccaacttttattcaattgtttaaccaaaatagtatcaagttagttagtattgggcaatgatcaagattttgct |
216 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33357854 |
ctattttatcactaccaactatacataccaatttttattcaattgtttaaccaaaatagtatcaagttagttagtattgagcaatgatcaagattttgct |
33357755 |
T |
|
| Q |
217 |
atgcacaatacaccacaagtccacaattggattaagctaaaatgtttaatctaaagtgagttacaaatcaaatctttttctctcaagagcagaatatgac |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33357754 |
atgcacaatacaccacaagtccacaattggattaagctaaaatgtttaatctaaagtgagttacaaatcaactctttttctctcaagagcagaatatgac |
33357655 |
T |
|
| Q |
317 |
aacaaacgtcttttattaccccctctaggtttcattggaagctgacatggtataaccgtaaacgacccagaacccaaacaagttcttggaaccgcaaaaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33357654 |
aacaaacgtcttttattaccccctctaggtttcattggaagctgacatggtataaccgtaaacgacccagaacccaaacaagttcttggaaccgcataaa |
33357555 |
T |
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| Q |
417 |
acttcacacactcctccataggtctctg |
444 |
Q |
| |
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|||||||||| ||||||||||||||||| |
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| T |
33357554 |
acttcacacaatcctccataggtctctg |
33357527 |
T |
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