View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20046_high_10 (Length: 332)
Name: NF20046_high_10
Description: NF20046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20046_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 10186367 - 10186512
Alignment:
| Q |
1 |
atctaaaatttcatgcttggacataaaaaagcctgccctgttgattatttcctagctttttcgttcctcccacttatatattttatcgtctgctctgtct |
100 |
Q |
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| T |
10186367 |
atctaaaatttcatgcttggacataaaaaagcctgccctgttgattatttcctagctttt-cgttcctcccacttatatattttatcatctgctctgtct |
10186465 |
T |
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| Q |
101 |
gattcatgtcgttggtggttgtagaaacccggaattccagaagtctg |
147 |
Q |
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| T |
10186466 |
gattcatgtcgttggtggttgtagaaacccggaattccagaagtctg |
10186512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 214 - 314
Target Start/End: Original strand, 10186579 - 10186679
Alignment:
| Q |
214 |
tcttgttttatgtcacattaagcttttgaagttatccattaataggctgagacataccactgtatgtcaaggctagctcgacacttaaaaggagtgactg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10186579 |
tcttgttttatgtcacattaagcttttgaagttatccattaataggctgagacataccactgtatgtcaaggctagctcgacacttaaaaggagcgactg |
10186678 |
T |
|
| Q |
314 |
a |
314 |
Q |
| |
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| |
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| T |
10186679 |
a |
10186679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 28931746 - 28931817
Alignment:
| Q |
223 |
atgtcacattaagcttttgaagttatccattaataggctgagacataccactgtatgtcaaggctagctcga |
294 |
Q |
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| T |
28931746 |
atgtaacatttaacttttgaagatattcattaataggctgagacataccactgtatgtcaaggctagctcga |
28931817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 223 - 314
Target Start/End: Complemental strand, 35122411 - 35122320
Alignment:
| Q |
223 |
atgtcacattaagcttttgaagttatccattaataggctgagacataccactgtatgtcaaggctagctcgacacttaaaaggagtgactga |
314 |
Q |
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|||| ||||||| ||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||| |
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| T |
35122411 |
atgtaacattaaacttttgaagttattcattgataggctgagacataccattgtatgtcaaggctagctcaacacttaaaaggagtgcctga |
35122320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 35122606 - 35122499
Alignment:
| Q |
39 |
tgttgattatttcctagctttttcgttcctcccacttatatattttatcgtctgctctgtctgattcatgtcgttggtggttgtagaaacccggaattcc |
138 |
Q |
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|||||||||| ||||||||||| | ||||||||||| ||| ||| | ||| ||||||||| | |||| ||| |||||||||||||||||||| ||||||| |
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| T |
35122606 |
tgttgattatctcctagctttt-ctttcctcccactcatagattatgtcgcctgctctgtttaattcttgttgttggtggttgtagaaacccagaattcc |
35122508 |
T |
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| Q |
139 |
agaagtctg |
147 |
Q |
| |
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| ||||||| |
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| T |
35122507 |
aaaagtctg |
35122499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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