View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20046_high_17 (Length: 224)

Name: NF20046_high_17
Description: NF20046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20046_high_17
NF20046_high_17
[»] chr2 (2 HSPs)
chr2 (17-210)||(1615052-1615240)
chr2 (20-209)||(24455854-24456036)
[»] chr3 (2 HSPs)
chr3 (17-209)||(49234328-49234516)
chr3 (17-209)||(49233757-49233944)
[»] chr1 (3 HSPs)
chr1 (17-209)||(50862533-50862720)
chr1 (171-209)||(47723999-47724037)
chr1 (171-209)||(47730991-47731029)
[»] chr8 (2 HSPs)
chr8 (17-209)||(43228090-43228275)
chr8 (17-202)||(14839131-14839309)
[»] chr7 (1 HSPs)
chr7 (17-202)||(27962381-27962559)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 1615052 - 1615240
Alignment:
Q  17 aagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactaca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1615052 aagacaaaggcaaagagaagaaaataaaaccgatacggtgcagt-----tgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactaca 1615146  T
Q  117 tagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgatctct 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1615147 tagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgatctct 1615240  T

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Target: chr2; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 24456036 - 24455854
Alignment:
Q  20 acaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatag 119  Q
    |||||||||||||||||||||||||||||||| |||||||     ||| | || |  ||||||||||||||||  |||| |||||||| ||||||| |||    
T  24456036 acaaaggcaaagagaagaaaataaaaccgatatggtgcag-----ctggaccaca--gagaaaaatcagaacatagggaggaaaaaataccactacgtag 24455944  T
Q  120 cagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgatctc 209  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  24455943 cagctgcaataccaaaacactgctgttgcattacattagtccacatgccgaaaaccagctctaaattatgcagaaaatcacctcgatctc 24455854  T

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Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 49234328 - 49234516
Alignment:
Q  17 aagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactaca 116  Q
    ||||| ||||||||||||||||| ||||||| ||| |      |||||||| |||| ||| ||| |||||||||||| |||| |||||||||||||||      
T  49234328 aagaccaaggcaaagagaagaaattaaaaccaatatg-----ttgcagctggaacacaaatagacaaatcagaacacagggaggaaaaaatgccactatg 49234422  T
Q  117 tagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgc-agaaaatcacctcgatctc 209  Q
    ||||||||||| ||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  49234423 tagcagctgcagtaccaaaacactgctgctgcattacattagcccacatgcagaaaaccagctctaaattatgcaagaaaatcacctcgatctc 49234516  T

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Target: chr3; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 49233757 - 49233944
Alignment:
Q  17 aagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactaca 116  Q
    ||||| ||||||||||||||||| ||||||| ||| |      |||||||| |||| ||| ||| |||||| ||||| |||| |||| ||||||||||      
T  49233757 aagaccaaggcaaagagaagaaattaaaaccaatatg-----ttgcagctggaacacaaatagacaaatcaaaacacagggaggaaagaatgccactatg 49233851  T
Q  117 tagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgatctc 209  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  49233852 tagcagctgtagtaccaaaacactgctgctgcactacattagtccacatgccgaaaaccagctctaaattatgcagaaaatcacctcgatctc 49233944  T

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Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 50862720 - 50862533
Alignment:
Q  17 aagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactaca 116  Q
    ||||| ||||||||||||||||| ||||||  ||| | ||||||     || |||| ||| ||| |||||||||||| |||| ||||||| |||||||      
T  50862720 aagaccaaggcaaagagaagaaattaaaactaatatgttgcagt-----tggaacacaaatagacaaatcagaacacagggaggaaaaaacgccactatg 50862626  T
Q  117 tagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgatctc 209  Q
    || |||||||| ||||||| || ||||| | |||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||    
T  50862625 taccagctgcagtaccaaagcagtgctgatacactacattagtccacatgccgaaaatcagctctaaattatgcagaaaatcacctcgatctc 50862533  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 47724037 - 47723999
Alignment:
Q  171 aaaccagctctaaattatgcagaaaatcacctcgatctc 209  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  47724037 aaaccagctctaaatgatgcagaaaatcacctcgatctc 47723999  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 47731029 - 47730991
Alignment:
Q  171 aaaccagctctaaattatgcagaaaatcacctcgatctc 209  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  47731029 aaaccagctctaaatgatgcagaaaatcacctcgatctc 47730991  T

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Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 43228275 - 43228090
Alignment:
Q  17 aagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactaca 116  Q
    ||||| ||||||||||||||||| ||||||||||| | |||||     ||| |||| |  |||| |||||||||| | |||| ||||||| ||||| |      
T  43228275 aagaccaaggcaaagagaagaaagtaaaaccgatatgttgcag-----ctggaacaca--gagacaaatcagaacgcagggaggaaaaaacgccaccagg 43228183  T
Q  117 tagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgatctc 209  Q
    ||| ||||||| | | ||||||||||||||||||||||||||||||||||  |||| ||| |||||||||||||||||||||||| |||||||    
T  43228182 tagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaagccaactctaaattatgcagaaaatcaccccgatctc 43228090  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 14839309 - 14839131
Alignment:
Q  17 aagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactaca 116  Q
    |||||| ||| |||||||||||||||||||||||| | |||||     ||| |||| |  |||| ||||||||||   |||| |||||||  || ||||     
T  14839309 aagacagaggaaaagagaagaaaataaaaccgatatgttgcag-----ctggaacaca--gagacaaatcagaacgtagggaggaaaaaactccgctacg 14839217  T
Q  117 tagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacct 202  Q
    |||||| |||| ||||||||||| || |||||| |||||||||||| |||  |||||||||||||||| ||||  |||||| ||||    
T  14839216 tagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaaaccagctctaaactatgtcgaaaattacct 14839131  T

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Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 27962381 - 27962559
Alignment:
Q  17 aagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactaca 116  Q
    |||||| ||| |||||||||||||||||||||||| | |||||     ||| |||| |  |||| ||||||||||   |||| |||||||  || ||||     
T  27962381 aagacagaggaaaagagaagaaaataaaaccgatatgttgcag-----ctggaacaca--gagacaaatcagaacgtagggaggaaaaaactccgctacg 27962473  T
Q  117 tagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacct 202  Q
    |||||| |||| ||||||||||| || |||||| |||||||||||| |||  |||||||||||||||| ||||  |||||| ||||    
T  27962474 tagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaaaccagctctaaactatgtcgaaaattacct 27962559  T

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