View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20046_high_18 (Length: 220)
Name: NF20046_high_18
Description: NF20046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20046_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 30 - 206
Target Start/End: Original strand, 7935619 - 7935797
Alignment:
| Q |
30 |
atctataaaaaatataagtacaaggattcaaaaaggaagtgttttagctagaattttagactaaatacatttgacattttaaaccattttacttatattt |
129 |
Q |
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| T |
7935619 |
atctataaaaaatataagtacaaggattcaaaaaggaagtgttttagctagaattttagactaaatacatttgacattttaaatcattttacttatattt |
7935718 |
T |
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| Q |
130 |
tgttacaaataaaatttaacaacattgtcac--atatattcgacagagagnnnnnnngtggttacctatacatataaat |
206 |
Q |
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| T |
7935719 |
tgttacaaataaaatttaacaacattgtcacatatatattcgacagagaaaaaaaaagtggttacctatacatataaat |
7935797 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 49822942 - 49822913
Alignment:
| Q |
1 |
aattataacttgaaacaaacacaccctcaa |
30 |
Q |
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| T |
49822942 |
aattataacttgaaacaaacacaccctcaa |
49822913 |
T |
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