View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20046_high_2 (Length: 680)
Name: NF20046_high_2
Description: NF20046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20046_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 631; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 20 - 670
Target Start/End: Original strand, 21097199 - 21097849
Alignment:
| Q |
20 |
tggtcttcaaacactgcatcattgaaaccattagagttgcatctcaaaaatgatggaaatcttgtgttgcgtgagcttcaaggaatcaacattttgtggc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21097199 |
tggtcttcaaacactgcatcattgaaaccattagaattgcatctcaaaaatgatggaaatcttgtgttgcgtgagcttcaaggaatcaacattttgtggc |
21097298 |
T |
|
| Q |
120 |
agagttttgactctccaacagatactctccttccaggtcaacctcttacaagatatacaaagcttgtatcttcaataagtgagagtaatcattcttctgg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21097299 |
agagttttgactctccaacagatactctccttccaggtcaacctcttacaagatatacaaagcttgtatcttcaataagtgagagtaatcattcttctgg |
21097398 |
T |
|
| Q |
220 |
cttctatatgttcttctttgatgatgaaaacattctcggtcttcattacgatggtcgcgatgtttctagctcttattggccaagtccttggctgctaagt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21097399 |
cttctatatgttcttctttgatgatgaaaacattctcggtcttcattacgacggtcgcgatgtttctagctcttattggccaagtccttggctgctaagt |
21097498 |
T |
|
| Q |
320 |
tgggatgttggcagatctaatttcaatagtagcagaaatgcagtgttggattcttttggtagtttccattcatcagataatttcactttttcaacttctg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21097499 |
tgggatgttggcagatctaatttcaatagtagcagaaatgcagtgttggattcttttggtagtttccattcatcagataatttcactttttcaacttctg |
21097598 |
T |
|
| Q |
420 |
attatggaactgttatgcaaagaatgatgaaattggattctgatggtgttgtgagagtgtatagcagaactaatgtgtcacagaattggtatgtttcatg |
519 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21097599 |
attatggaactgttctgcaaagaatgatgaaattggattctgatggtgttgtgagagtgtatagcagaacgaatgtgtcacagaattggtatgtttcatg |
21097698 |
T |
|
| Q |
520 |
gcaagcctttacaggtacttgtttagttcatggaatttgtggagctaatagtacatgtagttatagtcctaagattggaagaaaatgctcttgtattcca |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21097699 |
gcaagcctttacaggtacttgtttagttcatggaatttgtggagctaatagtacatgtagttatagtcctaagattggaagaaaatgctcttgtattcca |
21097798 |
T |
|
| Q |
620 |
gggtatagaatgaaaaatcctaatgattggtcttatggttgtgaacctatg |
670 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
21097799 |
gggtatagaatgaacaatcctaatgattggtcttatggttgtgaacctatg |
21097849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 21 - 670
Target Start/End: Original strand, 21106819 - 21107468
Alignment:
| Q |
21 |
ggtcttcaaacactgcatcattgaaaccattagagttgcatctcaaaaatgatggaaatcttgtgttgcgtgagcttcaaggaatcaacattttgtggca |
120 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21106819 |
ggtcttcaaacacagcatcattgaaaccactagagttgcatctcaaagatgatggaaatcttgtgttgcgtgagcttcaaggaatcacaattttgtggca |
21106918 |
T |
|
| Q |
121 |
gagttttgactctccaacagatactctccttccaggtcaacctcttacaagatatacaaagcttgtatcttcaataagtgagagtaatcattcttctggc |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||| |
|
|
| T |
21106919 |
gagttttgactctccaacagatactctccttccaggtcaacctcttacaagatatacaaagcttgtagcttcaagaagtgagagtaatcattctactggc |
21107018 |
T |
|
| Q |
221 |
ttctatatgttcttctttgatgatgaaaacattctcggtcttcattacgatggtcgcgatgtttctagctcttattggccaagtccttggctgctaagtt |
320 |
Q |
| |
|
||||| | ||||| ||||||||||| ||| |||| ||||||||||| ||||| | ||| ||||||||||||||||||||| |||||||| |||| || |
|
|
| T |
21107019 |
ttctacaagttctactttgatgatgcaaatgttcttggtcttcattatgatggccctgatatttctagctcttattggccaaaaccttggcttctaattt |
21107118 |
T |
|
| Q |
321 |
gggatgttggcagatctaatttcaatagtagcagaaatgcagtgttggattcttttggtagtttccattcatcagataatttcactttttcaacttctga |
420 |
Q |
| |
|
| | |||||||| ||||||||||| ||||||||| |||| ||||||| |||||||||||||||| |||||| |||||||| | ||| ||| ||||| |
|
|
| T |
21107119 |
cgcaagttggcagggctaatttcaatggtagcagaattgcattgttggactcttttggtagtttcctttcatcggataatttgattttcataacatctga |
21107218 |
T |
|
| Q |
421 |
ttatggaactgttatgcaaagaatgatgaaattggattctgatggtgttgtgagagtgtatagcagaactaatgtgtcacagaattggtatgtttcatgg |
520 |
Q |
| |
|
||||||||| ||| | ||||||| |||||| |||||||||||||| | | || |||||||| |||| |||||||||||| |||||||||||||||||| |
|
|
| T |
21107219 |
ttatggaacagttctacaaagaagaatgaaaatggattctgatggtaatttaagggtgtatagtagaattaatgtgtcacaaaattggtatgtttcatgg |
21107318 |
T |
|
| Q |
521 |
caagcctttacaggtacttgtttagttcatggaatttgtggagctaatagtacatgtagttatagtcctaagattggaagaaaatgctcttgtattccag |
620 |
Q |
| |
|
|||||| || ||| |||| ||| |||||| |||||||||| |||||| ||||||||||||| ||||||| |||||||||||| ||||||||||||| |
|
|
| T |
21107319 |
caagccatttatggtgcttgcatagctcatgggatttgtggagataatagcacatgtagttataatcctaagcatggaagaaaatgttcttgtattccag |
21107418 |
T |
|
| Q |
621 |
ggtatagaatgaaaaatcctaatgattggtcttatggttgtgaacctatg |
670 |
Q |
| |
|
|||||||| |||| || | || ||||||||||||||||||||| |||||| |
|
|
| T |
21107419 |
ggtatagagtgaagaaccatagtgattggtcttatggttgtgagcctatg |
21107468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 50 - 443
Target Start/End: Complemental strand, 21131983 - 21131590
Alignment:
| Q |
50 |
ttagagttgcatctcaaaaatgatggaaatcttgtgttgcgtgagcttcaaggaatcaacattttgtggcagagttttgactctccaacagatactctcc |
149 |
Q |
| |
|
||||||||| |||||||| | ||||| ||||||||||| |||||||||||||||| | |||||||||||| || | ||| | ||||| ||||||||| |
|
|
| T |
21131983 |
ttagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaggaagtaccattttgtggcaaagctatgatttcccaaccaatactctcc |
21131884 |
T |
|
| Q |
150 |
ttccaggtcaacctcttacaagatatacaaagcttgtatcttcaataagtgagagtaatcattcttctggcttctatatgttcttctttgatgatgaaaa |
249 |
Q |
| |
|
|||| |||||| || || ||||| ||||| ||||| ||||||| ||| ||||||||||||||||||||||||||| || |||||||||||| | || |
|
|
| T |
21131883 |
ttcctaatcaaccactcactagatacacaaaacttgtttcttcaagaagccagagtaatcattcttctggcttctataagtgtttctttgatgataacaa |
21131784 |
T |
|
| Q |
250 |
cattctcggtcttcattacgatggtcgcgatgtttctagctcttattggccaagtccttggctgctaagttgggatgttggcagatctaatttcaatagt |
349 |
Q |
| |
|
|| | |||| |||| ||||||| |||||||| ||| | ||||||||| |||||| || |||||||||| | ||| || | |||| ||||||| |
|
|
| T |
21131783 |
tatcattcgtctcgattatgatggtcctgatgtttcaagcacatattggccaccaccttggttgttaagttgggaagctggaaggttcaattacaatagt |
21131684 |
T |
|
| Q |
350 |
agcagaaatgcagtgttggattcttttggtagtttccattcatcagataatttcactttttcaacttctgattatggaactgttatgcaaagaa |
443 |
Q |
| |
|
|| |||| ||| | || |||||| |||| | ||| |||||| ||||||| ||||||||| || | ||||||||| | ||||||||||||| |
|
|
| T |
21131683 |
agtagaattgctttcttagattctcttggaaagttcatttcatctgataattacactttttccacatatgattatggcatggttatgcaaagaa |
21131590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 48 - 443
Target Start/End: Complemental strand, 18660147 - 18659752
Alignment:
| Q |
48 |
cattagagttgcatctcaaaaatgatggaaatcttgtgttgcgtgagcttcaaggaatcaacattttgtggcagagttttgactctccaacagatactct |
147 |
Q |
| |
|
||||||||||| |||||||| | ||||| |||||||| || |||||||||||||||| | ||| |||||||| || | ||| | |||||| ||||||| |
|
|
| T |
18660147 |
cattagagttgtatctcaaagaagatggtaatcttgtattacgtgagcttcaaggaactaccatcttgtggcaaagctatgatttcccaacaaatactct |
18660048 |
T |
|
| Q |
148 |
ccttccaggtcaacctcttacaagatatacaaagcttgtatcttcaataagtgagagtaatcattcttctggcttctatatgttcttctttgatgatgaa |
247 |
Q |
| |
|
|||||| ||||||||| || ||||| | ||| ||||| ||||||| ||| | ||||||||||||||||||||||||| ||| |||||||||||| | |
|
|
| T |
18660047 |
ccttcctaatcaacctctcactagatacataaaacttgtttcttcaaaaagccaaagtaatcattcttctggcttctataagtttttctttgatgataac |
18659948 |
T |
|
| Q |
248 |
aacattctcggtcttcattacgatggtcgcgatgtttctagctcttattggccaagtccttggctgctaagttgggatgttggcagatctaatttcaata |
347 |
Q |
| |
|
|| || | |||| |||| ||||||| |||||||| || | ||||||||| | ||| || |||| ||| | | ||| ||||| |||| ||||| |
|
|
| T |
18659947 |
aatgttattcgtctcaattatgatggtcctgatgtttcaagtacatattggccacctgctttattgttaagctggcaagctggaagatccaattacaata |
18659848 |
T |
|
| Q |
348 |
gtagcagaaatgcagtgttggattcttttggtagtttccattcatcagataatttcactttttcaacttctgattatggaactgttatgcaaagaa |
443 |
Q |
| |
|
|||| |||| |||| ||||||||||| |||| | ||| ||||| ||||||| || |||||| |||| ||||||||| | || |||||||||| |
|
|
| T |
18659847 |
gtagtagaattgcattgttggattctcttggaaagttcatatcatctgataattacattttttccacttatgattatggtatggtcatgcaaagaa |
18659752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 47 - 443
Target Start/End: Complemental strand, 21124423 - 21124024
Alignment:
| Q |
47 |
ccattagagttgcatctcaaaaatgatggaaatcttgtgttgcgtgagcttcaaggaatcaacattttgtggcagagttttgactctccaacagatactc |
146 |
Q |
| |
|
|||||||||||| |||||||| | ||||| ||||||||||| |||||||||||| ||| | ||||||| || | || | ||| | |||||| || ||| |
|
|
| T |
21124423 |
ccattagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaagaactaccattttgggggaaagctatgatttcccaacaaattctc |
21124324 |
T |
|
| Q |
147 |
tccttccaggtcaacctcttacaagatat---acaaagcttgtatcttcaataagtgagagtaatcattcttctggcttctatatgttcttctttgatga |
243 |
Q |
| |
|
||||||| ||||||||| || ||||| ||||| ||| | ||||||| ||| ||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
21124323 |
tccttcctaatcaacctctcactagataatacacaaaacttatttcttcaagaagccagagtaatcattcttctggcttctataagtgtttctttgatga |
21124224 |
T |
|
| Q |
244 |
tgaaaacattctcggtcttcattacgatggtcgcgatgtttctagctcttattggccaagtccttggctgctaagttgggatgttggcagatctaatttc |
343 |
Q |
| |
|
| | || || | |||| |||| ||||| | |||||||| ||| | ||||||||| | ||| | | ||||||||| | ||||| ||||| |||| | |
|
|
| T |
21124223 |
taacaatgttattcgtctcgattatgatggccctgatgtttcaagcacatattggccaccttctttgttactaagttggcaagttggaagatccaattac |
21124124 |
T |
|
| Q |
344 |
aatagtagcagaaatgcagtgttggattcttttggtagtttccattcatcagataatttcactttttcaacttctgattatggaactgttatgcaaagaa |
443 |
Q |
| |
|
||||||| || || ||| ||||||||||| |||| | ||| ||||| ||||||| ||||||||| |||| ||||||||| | ||||||||||||| |
|
|
| T |
21124123 |
aatagtaccataattgctttgttggattctcttggaaagttcatatcatctgataattacactttttccacttatgattatggtatggttatgcaaagaa |
21124024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 47 - 244
Target Start/End: Complemental strand, 21113026 - 21112829
Alignment:
| Q |
47 |
ccattagagttgcatctcaaaaatgatggaaatcttgtgttgcgtgagcttcaaggaatcaacattttgtggcagagttttgactctccaacagatactc |
146 |
Q |
| |
|
|||||||||||| |||| | | | ||||| ||||||||||| ||||||||||||||| | ||| |||||||| || | ||| | || ||| |||||| |
|
|
| T |
21113026 |
ccattagagttgtatcttagagaagatgggaatcttgtgttacgtgagcttcaaggacctaccatcttgtggcaaagctatgatttcccgacaaatactc |
21112927 |
T |
|
| Q |
147 |
tccttccaggtcaacctcttacaagatatacaaagcttgtatcttcaataagtgagagtaatcattcttctggcttctatatgttcttctttgatgat |
244 |
Q |
| |
|
||||||| ||||||||| || ||||||||||| ||||| ||||||| ||| | |||||||||||||||||||| |||| ||| |||||||||||| |
|
|
| T |
21112926 |
tccttcctaatcaacctctcactagatatacaaaccttgtttcttcaagaagccatagtaatcattcttctggcttttataagttgttctttgatgat |
21112829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 602 - 668
Target Start/End: Complemental strand, 21112471 - 21112405
Alignment:
| Q |
602 |
aaatgctcttgtattccagggtatagaatgaaaaatcctaatgattggtcttatggttgtgaaccta |
668 |
Q |
| |
|
|||||||||||| | || ||||||| |||||| || | |||||||||||||||||| |||||||||| |
|
|
| T |
21112471 |
aaatgctcttgtttgccggggtataaaatgaagaaccataatgattggtcttatggatgtgaaccta |
21112405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 601 - 667
Target Start/End: Complemental strand, 21131432 - 21131366
Alignment:
| Q |
601 |
aaaatgctcttgtattccagggtatagaatgaaaaatcctaatgattggtcttatggttgtgaacct |
667 |
Q |
| |
|
||||||||||||| | ||||| |||| | |||| || | || ||||||||||||||||||||||||| |
|
|
| T |
21131432 |
aaaatgctcttgtttgccaggatataaagtgaagaaccatagtgattggtcttatggttgtgaacct |
21131366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 602 - 670
Target Start/End: Complemental strand, 18659593 - 18659525
Alignment:
| Q |
602 |
aaatgctcttgtattccagggtatagaatgaaaaatcctaatgattggtcttatggttgtgaacctatg |
670 |
Q |
| |
|
|||||||||||| | |||||||||| | |||| || | |||||||| |||| |||||||||||||||| |
|
|
| T |
18659593 |
aaatgctcttgtttgccagggtataaagtgaagaaccataatgatttctcttctggttgtgaacctatg |
18659525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 51 - 244
Target Start/End: Original strand, 39130754 - 39130947
Alignment:
| Q |
51 |
tagagttgcatctcaaaaatgatggaaatcttgtgttgcgtgagcttcaaggaatcaacattttgtggcagagttttgactctccaacagatactctcct |
150 |
Q |
| |
|
|||||||| |||| ||| | ||||| ||||||||||| |||||||||||||| | | || |||||||| || | ||| | ||||||| |||||||||| |
|
|
| T |
39130754 |
tagagttgtatctaaaagaagatggcaatcttgtgttacgtgagcttcaaggtactacgatcttgtggcaaagctatgattttccaacaaatactctcct |
39130853 |
T |
|
| Q |
151 |
tccaggtcaacctcttacaagatatacaaagcttgtatcttcaataagtgagagtaatcattcttctggcttctatatgttcttctttgatgat |
244 |
Q |
| |
|
||| ||||||||| || ||||| ||||| |||| || |||| |||| ||||||||||||||||||||||||||| ||| || ||||||||| |
|
|
| T |
39130854 |
tcctaatcaacctctcactagatacacaaaacttggttcctcaagaagtcagagtaatcattcttctggcttctataagttgttttttgatgat |
39130947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 26745598 - 26745558
Alignment:
| Q |
113 |
ttgtggcagagttttgactctccaacagatactctccttcc |
153 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
26745598 |
ttgtggcagagttttgattccccaacagatactctccttcc |
26745558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 26738570 - 26738526
Alignment:
| Q |
109 |
cattttgtggcagagttttgactctccaacagatactctccttcc |
153 |
Q |
| |
|
|||||||||||| |||||||| | |||||||||||| |||||||| |
|
|
| T |
26738570 |
cattttgtggcaaagttttgattttccaacagataccctccttcc |
26738526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University