View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20046_high_6 (Length: 438)
Name: NF20046_high_6
Description: NF20046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20046_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 37903929 - 37903506
Alignment:
| Q |
1 |
tcagatttacagcttagggaaatgtcaacttttgcacttgggaggttggcacaggtgattatcatttgcaaccagtatttatctgtatatggaaattaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37903929 |
tcagatttacagcttagggaaatgtcaacttttgcacttgggaggttggcacaggtgattatcatttgcaaccagtatttatctgtatatgggaattaat |
37903830 |
T |
|
| Q |
101 |
ttatcgaaatcaatcctaaatgtttatataattcatgttaggactcacacaatcaagctggtattgcttataatggaggtatagagcctctgcttgatct |
200 |
Q |
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| T |
37903829 |
ttatcgaaatcaatcctaaatgtttatataattcatgttaggactcacacaatcaagctggtattgcttataatggaggtatagagcctctgcttgatct |
37903730 |
T |
|
| Q |
201 |
tcttgacacaaagaatggttctgttcaacacaacgcagcttttgctctctatggtctggctgataatgaggtgaagttagtttccttgttttttactcgt |
300 |
Q |
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| T |
37903729 |
tcttgacacaaagaatggttccgttcaacacaacgcagcttttgctctctatggtctggctgataatgaggtgaagttagtttccttgttttttactcgt |
37903630 |
T |
|
| Q |
301 |
tcagcatagtatgtggccctttattaatcattgatgcctggtgatatgctgcctctgacataactgctttgtatgacaggacaatgttgcggttataatt |
400 |
Q |
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| T |
37903629 |
tcagcatagtatgtggccctttattaatcattgatgcctggtgatatgctgcctctgacataactgctttgtatgacaggacaatgttgcggttataatt |
37903530 |
T |
|
| Q |
401 |
aaggctggtggttttcaaaaactg |
424 |
Q |
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| T |
37903529 |
aaggctggtggttttcaaaaactg |
37903506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 37910440 - 37910017
Alignment:
| Q |
1 |
tcagatttacagcttagggaaatgtcaacttttgcacttgggaggttggcacaggtgattatcatttgcaaccagtatttatctgtatatggaaattaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37910440 |
tcagatttacagcttagggaaatgtcaacttttgcacttgggaggttggcacaggtgattatcatttgcaaccagtatttatctgtatatgggaattaat |
37910341 |
T |
|
| Q |
101 |
ttatcgaaatcaatcctaaatgtttatataattcatgttaggactcacacaatcaagctggtattgcttataatggaggtatagagcctctgcttgatct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37910340 |
ttatcgaaatcaatcctaaatgtttatataattcatgttaggactcacacaatcaagctggtattgcttataatggaggtatagagcctctgcttgatct |
37910241 |
T |
|
| Q |
201 |
tcttgacacaaagaatggttctgttcaacacaacgcagcttttgctctctatggtctggctgataatgaggtgaagttagtttccttgttttttactcgt |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37910240 |
tcttgacacaaagaatggttccgttcaacacaacgcagcttttgctctctatggtctggctgataatgaggtgaagttagtttccttgttttttactcgt |
37910141 |
T |
|
| Q |
301 |
tcagcatagtatgtggccctttattaatcattgatgcctggtgatatgctgcctctgacataactgctttgtatgacaggacaatgttgcggttataatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37910140 |
tcagcatagtatgtggccctttattaatcattgatgcctggtgatatgctgcctctgacataactgctttgtatgacaggacaatgttgcggttataatt |
37910041 |
T |
|
| Q |
401 |
aaggctggtggttttcaaaaactg |
424 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
37910040 |
aaggctggtggttttcaaaaactg |
37910017 |
T |
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