View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20046_high_7 (Length: 436)
Name: NF20046_high_7
Description: NF20046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20046_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 21 - 383
Target Start/End: Original strand, 3470340 - 3470698
Alignment:
| Q |
21 |
taaattgaactatcatcttttgaatgaaggataatgcttaacatcgctaatttattgattgcgacaacatcaccagcgttcttagtagttgaaggctt-a |
119 |
Q |
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| T |
3470340 |
taaattgaactatcatcttttgaatgaaggataatgcttaacatcgctaatttattgattgcgacaacatcaccagcgttcttagtagttgaaggcttaa |
3470439 |
T |
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| Q |
120 |
aaactcttacccctatacctgctgtttttctggaaaag--acagagatttgattggttgattactgagtcgtttcgtgagtaattcatgataaattgtct |
217 |
Q |
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| T |
3470440 |
aaactcttacccctatacctgctgtttttctggaaaagaaaaagagatttgattggttgattactgagtcgtttcgtgagtaattcatgataaattgtct |
3470539 |
T |
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| Q |
218 |
cgtcgtaaatagcagcgctcttgcttgaatggtcgaggatcaatggctggataaacagttgtgatttaggtccgtgacagccccaaataccattggtgct |
317 |
Q |
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| T |
3470540 |
cgtcgtaaatagcagcgctcttgct-------tcgaggatcagtggctggataaacagttgtgatttaggtccgtgacagccccaaataccattggtgct |
3470632 |
T |
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| Q |
318 |
ctaatcgacaataatgacacctcaccacaacaccaagtttgttcataaaatttcatttctctatag |
383 |
Q |
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| T |
3470633 |
ctaattgacaataatgacacctcaccacaacaccaagtttgttcataaaatttcatttctctatag |
3470698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 237
Target Start/End: Original strand, 13253395 - 13253578
Alignment:
| Q |
49 |
ggataatgcttaacatcgctaatttattgattgcgacaacatcaccagcgttcttagtagttgaaggcttaaaactcttacccctatacctgctgt-ttt |
147 |
Q |
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| T |
13253395 |
ggataatgcttggcatcgcgaatttactgatagcgacaacatcacgaatgttcgaaatagctgaaagcttaaaactctaacccctttacctaccgtgttt |
13253494 |
T |
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| Q |
148 |
tctggaaaagacagagatttgattggttgattactgagtcgtttcgtgagtaattcatgataaattgtctcgtcgtaaatagcagcgctc |
237 |
Q |
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| T |
13253495 |
tccggaaaaca-agagatttggttggttaattattga-----ttcgtgagtaatttttgagaaattgtgtcgctgtaaatagcagcgctc |
13253578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 141
Target Start/End: Original strand, 38833223 - 38833315
Alignment:
| Q |
50 |
gataatgcttaacatcgctaatttattgattgcgacaacatcaccagcgttcttagt-agttgaaggcttaaaactcttacccctatacctgc |
141 |
Q |
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|||||||||| ||||||| |||||| ||| ||||||||||||| || |||| ||| || ||||||| ||||||||| |||||| ||||||| |
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| T |
38833223 |
gataatgcttgacatcgcaaatttacagatcgcgacaacatcacgagtgttcaaagtaagctgaaggcataaaactctaacccctttacctgc |
38833315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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