View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20046_high_8 (Length: 395)
Name: NF20046_high_8
Description: NF20046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20046_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 20 - 390
Target Start/End: Original strand, 12165458 - 12165828
Alignment:
| Q |
20 |
tcaatttcacctaattcagcnnnnnnntcttcatgaattttgctattttccatcaccttataagaaagtccatcactgaattctccttcatccatctcaa |
119 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12165458 |
tcaatttcacctaattcagcaaaaaaatcttcatgaattttgctattttccatcaccttataagaaagtccatcactgaattctccttcatccatctcaa |
12165557 |
T |
|
| Q |
120 |
tttgtagcttttctatatcttccatattctcttccttcacattgttaacaactggagaatcatttccatcactgttattattgttctcttgttcttcttt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12165558 |
tttgtagcttttctatatcttccatattctcttccttcacattgttaacaactggagaatcatttccatcactgttattattgttctcttgttcttcttt |
12165657 |
T |
|
| Q |
220 |
tggctttgttgtgtcattttgtggctgtgaagtttctgaattctttatagaagtattgtttttggatggttgagatcttgttgaacctgctaaggcattt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12165658 |
tggctttgttgtgtcattttgtggctgtgaagtttctgaattctttatagaagtattgtttttggatggttgagatcttgttgaacctgctaaggcattt |
12165757 |
T |
|
| Q |
320 |
ctttgtgttggccatggatgattgtgttctgaagtgtaggttataaccaacatgtttggatctgtgctgct |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12165758 |
ctttgtgttggccatggatgattgtgttctgaagtgtaggttataaccaacatgtttggatctgttctgct |
12165828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University