View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20046_low_17 (Length: 270)
Name: NF20046_low_17
Description: NF20046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20046_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 8 - 254
Target Start/End: Complemental strand, 683523 - 683277
Alignment:
| Q |
8 |
atcatcatcatcatcgtttagcaccagttttcgtttcttagggttgtgattaatcattcccctttccatgcttcaaactctgtaaaaacagaaagacgaa |
107 |
Q |
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| T |
683523 |
atcatcatcatcatcgtttagcaccagttttcgtttcttagggttgtgattaatcattcccctttccatgcttcaaactctgtaaaaacagaaaaacgaa |
683424 |
T |
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| Q |
108 |
caacaacacaagtaacttaacgatcaatgccatttcttgttgaaacaaagcaaataaagaaaccagaaggaaaatagaaatataaattgatgataatgtt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
683423 |
caacaacacaagtaacttaacgatcaatgccatttcttgttgaaacaaagaaaataaagaaaccagaaggaaaatagaaataaaaaatgatgataatgtt |
683324 |
T |
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| Q |
208 |
gatttgaaaatgagatatatcttatatagaaatagaaacttagttaa |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
683323 |
gatttgaaaatgagatatatcttatatagaaatagaaacttagttaa |
683277 |
T |
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