View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20046_low_3 (Length: 543)
Name: NF20046_low_3
Description: NF20046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20046_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 16 - 527
Target Start/End: Complemental strand, 36704420 - 36703919
Alignment:
| Q |
16 |
gattatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcccatgatagcttttttcaactctcattgattttactaccacg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
36704420 |
gattatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcccataatagcttttttcaactctcattgattttactaccaag |
36704321 |
T |
|
| Q |
116 |
atatatttattatattgtacttcaaataatgtattgtagcatataggagtagttttttcatttagttgagattcattcgagtgnnnnnnnnctcaactga |
215 |
Q |
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||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36704320 |
atatatttattatattgtactacaaataatgtattgtagtatataggagtagttttttcatttagttgagattcattcgagtgttttttttctcaactga |
36704221 |
T |
|
| Q |
216 |
gtatgttagatttccatcaaaattaaaataaaaagaatatagactgtgttattcttctccatatttaatcacaaaagttgtcttgttttttcaacttaga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36704220 |
gtatgttagatttccatcaaaattaaaataaaaagaatatagactgtgttattcttctccatatttaatcacaaaagttgtcttgttttttcaacttaga |
36704121 |
T |
|
| Q |
316 |
tagatcggttgaatttctccatttttcactaacctcacactttcattgcggtttactatttttaaacaaccatta-ttttgtgttattcttacatgagat |
414 |
Q |
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|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36704120 |
tatatcggtcgaatttctccatttttcactaacctcacactttcattgcggtttactatttttaaacaaccattatttttgtgttattcttacatgagat |
36704021 |
T |
|
| Q |
415 |
aataagcgaaagaagttnnnnnnnnnnnnnnnnnnncatacatttgatagtgcaaattcatggtactatttgataacaaaactgaatgcacgtgatgcct |
514 |
Q |
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| T |
36704020 |
aataagcgaaagaagtt----------aaaaaaaaacat-catttgatagtgcaaattcatagtactatttgataacaaaactgaatgcacgtgatgcct |
36703932 |
T |
|
| Q |
515 |
ttctatttgcaca |
527 |
Q |
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||||||||||||| |
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| T |
36703931 |
ttctatttgcaca |
36703919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 36711567 - 36711475
Alignment:
| Q |
16 |
gattatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcccatgatagcttttttcaactctcattgattttac |
108 |
Q |
| |
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|||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36711567 |
gattatgcacatcttgattttatattgggtgataatgctaaacaagtcgtttatgatcccatgatagcttttttcaacgctcattgattttac |
36711475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 36677374 - 36677311
Alignment:
| Q |
17 |
attatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcccatgat |
80 |
Q |
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|||||||||||| ||||| || |||| || ||||||||||||||||||||||||||| ||||| |
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| T |
36677374 |
attatgcacatgtagatttcattgcggctgtcaatgctaaacaagtcgtttatgatcctatgat |
36677311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 36687456 - 36687393
Alignment:
| Q |
17 |
attatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcccatgat |
80 |
Q |
| |
|
|||||||||||| ||||| || |||| || ||||||||||||||||||||||||||| ||||| |
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| T |
36687456 |
attatgcacatgtagatttcattgcggctgtcaatgctaaacaagtcgtttatgatcctatgat |
36687393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 36664902 - 36664946
Alignment:
| Q |
48 |
caatgctaaacaagtcgtttatgatcccatgatagcttttttcaa |
92 |
Q |
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| T |
36664902 |
caatgctaaacaactcatttatgatcctatgatagcttttttcaa |
36664946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 36711398 - 36711358
Alignment:
| Q |
213 |
tgagtatgttagatttccatcaaaattaaaataaaaagaat |
253 |
Q |
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|||||||||||||||||| |||||||||||| ||||||||| |
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| T |
36711398 |
tgagtatgttagatttccgtcaaaattaaaacaaaaagaat |
36711358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 30905744 - 30905837
Alignment:
| Q |
15 |
agattatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcccatgatagcttttttcaactctcattgattttac |
108 |
Q |
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|||||||||||||||||||||| | || | || |||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
30905744 |
agattatgcacatgctgattttgttatggccgtcagtgctaaacaagtggtttatgatcccatgatagcttttttcaacgctcattaattttac |
30905837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 30912212 - 30912288
Alignment:
| Q |
17 |
attatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcccatgatagcttttttcaac |
93 |
Q |
| |
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|||||||||||||||||||||| | ||| || |||||||||| |||||||||||||||||||| |||||||||| |
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| T |
30912212 |
attatgcacatgctgattttattatgagtgtcaccgctaaacaagacgtttatgatcccatgatagattttttcaac |
30912288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 11294987 - 11295073
Alignment:
| Q |
17 |
attatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcccatgatagcttttttcaactctcattgat |
103 |
Q |
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||||||| |||||||||||||| |||| ||| |||||||||| |||||||||||||||||||| ||||||||| ||||||||| |
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| T |
11294987 |
attatgctcatgctgattttattttaggtgtcaaagctaaacaagacgtttatgatcccatgatagattttttcaatgctcattgat |
11295073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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