View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20046_low_4 (Length: 534)

Name: NF20046_low_4
Description: NF20046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20046_low_4
NF20046_low_4
[»] chr2 (38 HSPs)
chr2 (30-302)||(9964638-9964910)
chr2 (320-517)||(9967038-9967235)
chr2 (335-479)||(27265990-27266134)
chr2 (336-487)||(16791497-16791647)
chr2 (35-136)||(38402504-38402605)
chr2 (336-487)||(40259899-40260050)
chr2 (337-486)||(1387163-1387311)
chr2 (336-486)||(16178342-16178492)
chr2 (336-484)||(37937958-37938106)
chr2 (30-130)||(2854404-2854504)
chr2 (358-446)||(22630076-22630164)
chr2 (336-459)||(25955857-25955978)
chr2 (33-133)||(13490811-13490911)
chr2 (58-130)||(13530616-13530688)
chr2 (56-128)||(16471196-16471268)
chr2 (336-459)||(25960430-25960551)
chr2 (336-459)||(31586663-31586784)
chr2 (336-398)||(24237651-24237713)
chr2 (336-398)||(40780755-40780817)
chr2 (63-132)||(39491075-39491144)
chr2 (58-130)||(36903935-36904007)
chr2 (336-459)||(30148647-30148768)
chr2 (83-149)||(6563033-6563099)
chr2 (336-398)||(9186184-9186246)
chr2 (336-398)||(25957204-25957266)
chr2 (336-398)||(37280437-37280499)
chr2 (336-398)||(42369450-42369512)
chr2 (56-128)||(42371891-42371961)
chr2 (58-126)||(15335811-15335879)
chr2 (336-459)||(8887880-8888001)
chr2 (336-459)||(11348635-11348756)
chr2 (58-104)||(4428778-4428824)
chr2 (59-129)||(4652008-4652078)
chr2 (336-398)||(24234379-24234441)
chr2 (336-398)||(43208650-43208712)
chr2 (375-487)||(12219072-12219184)
chr2 (336-372)||(29867650-29867686)
chr2 (58-130)||(39791505-39791577)
[»] chr6 (22 HSPs)
chr6 (336-486)||(11126455-11126605)
chr6 (337-486)||(22561886-22562034)
chr6 (336-459)||(11188676-11188797)
chr6 (336-486)||(31880140-31880287)
chr6 (336-401)||(26898629-26898693)
chr6 (58-130)||(31631897-31631969)
chr6 (63-130)||(40020-40087)
chr6 (336-459)||(2378473-2378594)
chr6 (336-398)||(11401559-11401621)
chr6 (336-398)||(11730095-11730157)
chr6 (336-398)||(15543312-15543374)
chr6 (336-398)||(28229897-28229959)
chr6 (31-128)||(7984544-7984641)
chr6 (357-487)||(18856804-18856934)
chr6 (336-486)||(24399395-24399545)
chr6 (355-484)||(13941780-13941909)
chr6 (425-486)||(4511714-4511775)
chr6 (425-486)||(11193481-11193541)
chr6 (57-130)||(31490421-31490494)
chr6 (58-127)||(33193757-33193826)
chr6 (63-135)||(6100741-6100813)
chr6 (403-471)||(13004414-13004482)
[»] chr3 (45 HSPs)
chr3 (324-486)||(27091188-27091350)
chr3 (323-488)||(28008780-28008946)
chr3 (336-486)||(46884250-46884400)
chr3 (336-486)||(17140729-17140878)
chr3 (336-486)||(54719345-54719494)
chr3 (336-487)||(46985893-46986043)
chr3 (336-486)||(32367874-32368024)
chr3 (336-485)||(32288071-32288217)
chr3 (336-489)||(11784060-11784213)
chr3 (336-486)||(52987703-52987853)
chr3 (337-486)||(22417580-22417729)
chr3 (337-486)||(12561980-12562129)
chr3 (336-484)||(15196048-15196196)
chr3 (336-487)||(17040768-17040919)
chr3 (337-487)||(22010668-22010818)
chr3 (336-459)||(43926162-43926283)
chr3 (336-459)||(54723068-54723189)
chr3 (336-459)||(25584019-25584140)
chr3 (336-459)||(30690062-30690183)
chr3 (336-459)||(49743666-49743787)
chr3 (336-398)||(2872950-2873012)
chr3 (336-398)||(7485957-7486019)
chr3 (56-134)||(30403292-30403370)
chr3 (336-459)||(11189865-11189986)
chr3 (58-137)||(45249432-45249511)
chr3 (58-125)||(47595569-47595636)
chr3 (336-459)||(50462296-50462417)
chr3 (336-398)||(2778112-2778174)
chr3 (93-131)||(25122437-25122475)
chr3 (336-398)||(45895766-45895828)
chr3 (58-135)||(27214008-27214085)
chr3 (336-373)||(32288050-32288087)
chr3 (336-372)||(30220754-30220790)
chr3 (89-128)||(9247188-9247227)
chr3 (336-459)||(24124825-24124946)
chr3 (60-127)||(42225958-42226025)
chr3 (83-130)||(44790606-44790653)
chr3 (80-135)||(52041516-52041571)
chr3 (336-398)||(2774890-2774952)
chr3 (336-398)||(12535818-12535880)
chr3 (58-136)||(48993330-48993408)
chr3 (58-123)||(8108192-8108257)
chr3 (56-101)||(26043456-26043501)
chr3 (58-131)||(44455061-44455134)
chr3 (336-372)||(29810650-29810685)
[»] chr8 (22 HSPs)
chr8 (336-488)||(21280527-21280679)
chr8 (358-486)||(13196058-13196186)
chr8 (336-486)||(31283880-31284030)
chr8 (336-486)||(8910862-8911011)
chr8 (336-488)||(2559796-2559949)
chr8 (337-487)||(23621066-23621216)
chr8 (386-486)||(17930230-17930329)
chr8 (31-130)||(13177800-13177899)
chr8 (336-486)||(33418844-33418993)
chr8 (336-459)||(16953036-16953157)
chr8 (336-486)||(23593313-23593462)
chr8 (58-130)||(38573264-38573336)
chr8 (33-140)||(32967666-32967773)
chr8 (81-130)||(11611590-11611639)
chr8 (337-382)||(10498974-10499019)
chr8 (58-130)||(12763332-12763404)
chr8 (58-130)||(13018461-13018533)
chr8 (80-130)||(44395634-44395684)
chr8 (93-130)||(27134648-27134685)
chr8 (335-376)||(33419093-33419134)
chr8 (58-130)||(24999461-24999533)
chr8 (336-372)||(43036205-43036240)
[»] chr4 (36 HSPs)
chr4 (336-486)||(11194888-11195038)
chr4 (336-487)||(30391784-30391935)
chr4 (336-486)||(29545633-29545783)
chr4 (336-486)||(25961305-25961455)
chr4 (58-136)||(9093653-9093731)
chr4 (337-486)||(18673809-18673958)
chr4 (58-132)||(31861623-31861697)
chr4 (336-486)||(40494104-40494254)
chr4 (58-124)||(3121037-3121103)
chr4 (58-127)||(43361860-43361929)
chr4 (336-459)||(38284256-38284377)
chr4 (336-459)||(48636747-48636868)
chr4 (59-125)||(10097993-10098059)
chr4 (33-130)||(29927279-29927376)
chr4 (336-459)||(34018540-34018661)
chr4 (336-459)||(48416289-48416410)
chr4 (336-459)||(52531674-52531795)
chr4 (56-130)||(46737405-46737479)
chr4 (62-127)||(31370071-31370135)
chr4 (58-106)||(25231578-25231626)
chr4 (58-130)||(29235601-29235673)
chr4 (336-459)||(24149934-24150055)
chr4 (336-459)||(39500910-39501031)
chr4 (336-398)||(39494656-39494718)
chr4 (58-124)||(43142033-43142099)
chr4 (30-128)||(49013780-49013877)
chr4 (58-106)||(16958434-16958482)
chr4 (58-130)||(52270437-52270509)
chr4 (63-134)||(43432338-43432409)
chr4 (58-127)||(8291037-8291106)
chr4 (58-107)||(35808686-35808735)
chr4 (63-124)||(41621891-41621952)
chr4 (58-130)||(2168426-2168498)
chr4 (57-101)||(30694352-30694396)
chr4 (336-372)||(34570765-34570800)
chr4 (58-130)||(41735399-41735471)
[»] chr5 (30 HSPs)
chr5 (323-487)||(18951975-18952139)
chr5 (336-486)||(26908139-26908290)
chr5 (336-486)||(40582463-40582612)
chr5 (366-486)||(26292086-26292205)
chr5 (336-487)||(23043398-23043549)
chr5 (337-486)||(34133723-34133872)
chr5 (337-486)||(34143973-34144122)
chr5 (58-130)||(37447306-37447378)
chr5 (57-145)||(35626657-35626745)
chr5 (63-131)||(1056557-1056625)
chr5 (58-130)||(34338878-34338950)
chr5 (337-486)||(12059252-12059401)
chr5 (58-128)||(16054443-16054513)
chr5 (336-382)||(34831080-34831126)
chr5 (336-398)||(41307286-41307348)
chr5 (336-397)||(12087260-12087321)
chr5 (337-398)||(26753462-26753523)
chr5 (58-130)||(15476860-15476932)
chr5 (58-134)||(20913529-20913604)
chr5 (79-130)||(2415189-2415240)
chr5 (63-134)||(10911116-10911187)
chr5 (63-130)||(36487186-36487253)
chr5 (63-125)||(20920887-20920949)
chr5 (80-130)||(22088522-22088572)
chr5 (336-372)||(533551-533586)
chr5 (58-126)||(20894247-20894315)
chr5 (59-127)||(28992594-28992662)
chr5 (59-127)||(28995872-28995940)
chr5 (58-130)||(32292290-32292362)
chr5 (338-398)||(41877526-41877586)
[»] chr1 (16 HSPs)
chr1 (336-486)||(673748-673899)
chr1 (338-486)||(906448-906596)
chr1 (336-459)||(37184624-37184745)
chr1 (336-398)||(3797564-3797626)
chr1 (337-398)||(23022684-23022745)
chr1 (336-459)||(28110321-28110442)
chr1 (58-124)||(35365598-35365664)
chr1 (336-397)||(20398175-20398236)
chr1 (80-130)||(3527779-3527829)
chr1 (58-128)||(21824236-21824306)
chr1 (58-124)||(42410268-42410334)
chr1 (336-398)||(45940718-45940779)
chr1 (336-373)||(28220577-28220613)
chr1 (66-130)||(894752-894816)
chr1 (91-127)||(2574866-2574902)
chr1 (336-372)||(30476799-30476834)
[»] chr7 (28 HSPs)
chr7 (336-486)||(9133482-9133631)
chr7 (336-487)||(20593477-20593628)
chr7 (357-487)||(26145291-26145421)
chr7 (337-486)||(26136891-26137040)
chr7 (336-459)||(23225670-23225792)
chr7 (336-459)||(23234823-23234945)
chr7 (336-459)||(37166911-37167032)
chr7 (336-401)||(22612271-22612336)
chr7 (336-439)||(9405525-9405628)
chr7 (336-486)||(10468344-10468494)
chr7 (336-398)||(11951157-11951219)
chr7 (58-130)||(28514611-28514683)
chr7 (63-130)||(25120019-25120086)
chr7 (31-87)||(29648585-29648641)
chr7 (58-130)||(31191346-31191417)
chr7 (58-137)||(10624912-10624991)
chr7 (93-128)||(29555823-29555858)
chr7 (58-137)||(45618519-45618598)
chr7 (336-398)||(4861101-4861163)
chr7 (58-124)||(24316238-24316304)
chr7 (58-128)||(29414609-29414679)
chr7 (56-130)||(40199029-40199103)
chr7 (58-136)||(48488491-48488569)
chr7 (336-377)||(3068599-3068640)
chr7 (58-130)||(45662305-45662377)
chr7 (336-372)||(2761653-2761688)
chr7 (336-372)||(14070184-14070219)
chr7 (336-372)||(14380212-14380247)
[»] scaffold0216 (1 HSPs)
scaffold0216 (336-487)||(12691-12842)
[»] scaffold0065 (1 HSPs)
scaffold0065 (336-487)||(59440-59592)
[»] scaffold0321 (1 HSPs)
scaffold0321 (336-486)||(3695-3847)
[»] scaffold0048 (2 HSPs)
scaffold0048 (337-486)||(24035-24184)
scaffold0048 (337-486)||(28273-28422)
[»] scaffold1785 (1 HSPs)
scaffold1785 (336-484)||(620-768)
[»] scaffold0035 (1 HSPs)
scaffold0035 (336-484)||(63230-63378)
[»] scaffold0056 (1 HSPs)
scaffold0056 (336-398)||(68284-68346)
[»] scaffold0037 (1 HSPs)
scaffold0037 (336-401)||(95884-95948)
[»] scaffold0084 (1 HSPs)
scaffold0084 (336-486)||(18602-18752)
[»] scaffold0250 (1 HSPs)
scaffold0250 (336-398)||(18696-18758)
[»] scaffold0038 (1 HSPs)
scaffold0038 (336-398)||(30395-30457)
[»] scaffold0265 (2 HSPs)
scaffold0265 (58-128)||(3615-3685)
scaffold0265 (58-128)||(8504-8574)
[»] scaffold0172 (1 HSPs)
scaffold0172 (89-125)||(19412-19448)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 30 - 302
Target Start/End: Original strand, 9964638 - 9964910
Alignment:
Q  30 gtgtagttatgatttttagaagagtgtaacttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaag 129  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  9964638 gtgtagttatgatttttagaagagtgtaacttgtattttcaagacaaacattctttttatgaattccttaaacaatgttattaggacacttgttagcaag 9964737  T
Q  130 atcctaatagtaataaccataaatcgtcgttaacatgtaaaagcacatgaatgaaaggttaagaccatcttcattgggtgnnnnnnnnttgagtgtctaa 229  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  9964738 atcctaattgtaataaccacaaatcgtcgttaacatgtaaaagcacatgaatgaaaggttaagaccatcttcattgggtgaaaaaaaattgagtgtctaa 9964837  T
Q  230 tgcgaacaagagctcaatatgcactctatcttaagtgggattgataagtatcaattttagtttatattcaaca 302  Q
    ||||||||||  |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9964838 tgcgaacaaggtctcaataaacactccatcttaagtgggattgataagtatcaattttagtttatattcaaca 9964910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 320 - 517
Target Start/End: Original strand, 9967038 - 9967235
Alignment:
Q  320 atgtttttgctttgctaaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaa 419  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9967038 atgtttttgctttgccaaatcgtgttacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctgcttttcatgctgcttaa 9967137  T
Q  420 attgtcttgtaaactccaaaatatgataaaactacatatacaattacgtaatgacaagatgtcatcaagaacggatcgaattaaaatgaggtctcatt 517  Q
     |||  ||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9967138 gttgcattgtaaacttcaaaatatgataaaattacatatacaattacgtaatgacaagaggtcatcaagaacggatcgaattaaaatgaggtctcatt 9967235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 335 - 479
Target Start/End: Complemental strand, 27266134 - 27265990
Alignment:
Q  335 taaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaact 434  Q
    ||||||||||||| | ||   ||||||||||||| |||| |||||||||| ||| |||||||||||| |||||| | |||| ||| |||  |||| ||||    
T  27266134 taaatcgtgtcacatctttgacaaatcgtgacacatttttcttctttgcaattttttcagtttttctgcttttcttactgcataagttgctttgtgaact 27266035  T
Q  435 ccaaaatatgataaaactacatatacaattacgtaatgacaagat 479  Q
    ||||||| |||| ||| |||||||| |||||||||||||| ||||    
T  27266034 ccaaaatgtgatcaaattacatataaaattacgtaatgacgagat 27265990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 336 - 487
Target Start/End: Original strand, 16791497 - 16791647
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    |||||||| |||||||||   ||||||||||||| ||| |||||||| | |||||  ||  ||||| |||||| |||||| ||| |||  |||| |||||    
T  16791497 aaatcgtggcacgttttctggaaatcgtgacacgatttgcttctttgtattttctatagaatttctgcttttcttgctgcataagttgctttgtgaactc 16791596  T
Q  436 caaaatatgataaaactacatatacaattacgtaatgacaagatgtcatcaa 487  Q
    |||||| |||||||| |||||| | ||||| |||||||||||||||||||||    
T  16791597 caaaatgtgataaaagtacata-aaaattatgtaatgacaagatgtcatcaa 16791647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 38402605 - 38402504
Alignment:
Q  35 gttatgatttttagaagagtgtaacttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaagatcct 134  Q
    ||||||| ||| ||||| || |||||| ||||||||| ||| |  |||||||||||||||||||||||||||  |||| ||||||||||||||||| |||    
T  38402605 gttatgactttaagaagtgtttaacttgtattttcaaaacataatttctttttatggattccttaaacaatgcccttatgacacttgttagcaagaccct 38402506  T
Q  135 aa 136  Q
    ||    
T  38402505 aa 38402504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 336 - 487
Target Start/End: Original strand, 40259899 - 40260050
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||| | ||||| |||||||||| || ||  |||| | ||| ||| ||||| |||||    
T  40259899 aaatcgtgtcacgtttttaccaaatcgtgacacgtttt-cttctttgtattttctccagtttttctgctctttttgctacataagttgccttgtgaactc 40259997  T
Q  436 caaaatatgataaaactacatat-acaattacgtaatgacaagatgtcatcaa 487  Q
    ||   | |||| ||| ||||||| | |||||||||||||| |||| |||||||    
T  40259998 cactttgtgatcaaaatacatataaaaattacgtaatgacgagatatcatcaa 40260050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 486
Target Start/End: Original strand, 1387163 - 1387311
Alignment:
Q  337 aatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactcc 436  Q
    ||||||||||| |||| |||||||||||||||| |||||||||||| | |||||||| ||||||| || ||  |||||| ||| ||| ||||| ||||||    
T  1387163 aatcgtgtcacatttttaccaaatcgtgacacgatttccttctttgtattttcttca-tttttctgctctt-ttgctgcataagttgccttgtgaactcc 1387260  T
Q  437 aaaatatgataaaactacatat-acaattacgtaatgacaagatgtcatca 486  Q
    |   | |||| ||| ||||||| | |||||||||||||| |||||||||||    
T  1387261 actttgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 1387311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 336 - 486
Target Start/End: Complemental strand, 16178492 - 16178342
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||||| |||||||||| || |||| | |||||| || |||| |  ||||| |||||| ||| ||| ||||| || ||    
T  16178492 aaatcgtgtcacgtttttaccaaatcgttacacgttttcattatttgtattttctttaggttttttgtttttcttgctgcataagttgacttgtgaattc 16178393  T
Q  436 caaaatatgataaaactacatatacaattacgtaatgacaagatgtcatca 486  Q
     ||||| |||| ||| |||| | | |||||| ||||||| |||||||||||    
T  16178392 taaaatgtgatcaaattacaaagagaattacataatgacgagatgtcatca 16178342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 336 - 484
Target Start/End: Original strand, 37937958 - 37938106
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| ||||||||||||||||||||| | | ||| | ||||||||| |||||  || ||  |||||| ||| ||| ||||| |||||    
T  37937958 aaatcgtgtcacgtttttaccaaatcgtgacacgttttcttcccttgtattttcttcag-ttttccgctctttttgctgcataagttgccttgtgaactc 37938056  T
Q  436 caaaatatgataaaactacatat-acaattacgtaatgacaagatgtcat 484  Q
    |||| | |||| ||| ||||||| | ||||| |||||||| |||||||||    
T  37938057 caaattgtgatcaaaatacatataaaaattatgtaatgacgagatgtcat 37938106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 2854404 - 2854504
Alignment:
Q  30 gtgtagttatgatttttagaagagtgtaacttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaag 129  Q
    |||||||||||| |||||||   || |||||| |||||||||||||||  |||||| | |||||||||||||| |||  |||||| ||||||||||||||    
T  2854404 gtgtagttatgacttttagatatgtttaacttgtattttcaagacaaaatttctttatgtggattccttaaacgatgcccttagggcacttgttagcaag 2854503  T
Q  130 a 130  Q
    |    
T  2854504 a 2854504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 358 - 446
Target Start/End: Complemental strand, 22630164 - 22630076
Alignment:
Q  358 aatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactccaaaatatgat 446  Q
    |||||||||||||||| |||||||| | ||||||| |||||||| |||||| |||||| ||| |||  |||| ||||||||||||||||    
T  22630164 aatcgtgacacgttttgcttctttgtattttcttctgtttttctgcttttcttgctgcataagttgctttgtgaactccaaaatatgat 22630076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 336 - 459
Target Start/End: Complemental strand, 25955978 - 25955857
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | ||||||||| ||||||||| ||  |||||| ||| ||| ||||| |||||    
T  25955978 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcag-ttttctactctt-ttgctgcataagttgccttgtgaactc 25955881  T
Q  436 caaaatatgataaaactacatata 459  Q
    |||  | |||| ||||||||||||    
T  25955880 caatttgtgatcaaactacatata 25955857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 33 - 133
Target Start/End: Complemental strand, 13490911 - 13490811
Alignment:
Q  33 tagttatgatttttagaagagtgtaacttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaagatc 132  Q
    ||||||||||||||| | | || |  |||||||||||||||||||  || ||||| ||| ||| |||||||||| | ||||| |||||||||||||||||    
T  13490911 tagttatgatttttacatgtgtttgccttatattttcaagacaaaatttatttttgtgggttctttaaacaatgcttttagggcacttgttagcaagatc 13490812  T
Q  133 c 133  Q
    |    
T  13490811 c 13490811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 13530616 - 13530688
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    |||| |||||||||||||||| || ||||| |||||||||| |||||||| |||| ||||||||||| |||||    
T  13530616 acttgtattttcaagacaaactttttttttgtggattcctttaacaatgtccttaagacacttgttaacaaga 13530688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 16471196 - 16471268
Alignment:
Q  56 taacttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaa 128  Q
    |||||| ||||||||| | |||  |||||||| ||| |||||||||||||||||||| |||||||||||||||    
T  16471196 taacttgtattttcaacataaaatttctttttgtgggttccttaaacaatgttcttatgacacttgttagcaa 16471268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 459
Target Start/End: Original strand, 25960430 - 25960551
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | ||||||||| ||||||||| ||  |||||| | | ||| ||||| |||||    
T  25960430 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcag-ttttctactctt-ttgctgcatcagttgccttgtgaactc 25960527  T
Q  436 caaaatatgataaaactacatata 459  Q
    |||  | |||| ||||||||||||    
T  25960528 caatttgtgatcaaactacatata 25960551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 459
Target Start/End: Original strand, 31586663 - 31586784
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | ||||||||| ||||||||| ||  |||||| ||| ||| ||||| |||||    
T  31586663 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcag-ttttctactctt-ttgctgcataagttgccttgtgaactc 31586760  T
Q  436 caaaatatgataaaactacatata 459  Q
    |||  | |||| ||| ||||||||    
T  31586761 caatttgtgatcaaaatacatata 31586784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 24237713 - 24237651
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | |||||||||||||    
T  24237713 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagtttt 24237651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 40780817 - 40780755
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | |||||||||||||    
T  40780817 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagtttt 40780755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 39491075 - 39491144
Alignment:
Q  63 tattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaagatc 132  Q
    |||||| |||||||   |||||||||||||||| ||||||||| || |||| ||||||||||||||||||    
T  39491075 tattttgaagacaacatttctttttatggattctttaaacaatatttttagaacacttgttagcaagatc 39491144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 36904007 - 36903935
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    |||| ||||||||||||| |  |||||||| ||| ||||||||||||||  |||||| |||||||||||||||    
T  36904007 acttgtattttcaagacataatttctttttgtgggttccttaaacaatgcccttagggcacttgttagcaaga 36903935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 459
Target Start/End: Complemental strand, 30148768 - 30148647
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| ||||||||||| |||| ||  |||||||| | ||||||||| ||||||||| ||  |||||| ||| ||| ||||| |||||    
T  30148768 aaatcgtgtcacgtttttaccaaatcgtggcacgattctcttctttgtattttcttcag-ttttctactctt-ttgctgcataagttgccttgtgaactc 30148671  T
Q  436 caaaatatgataaaactacatata 459  Q
    |||  | |||| ||| ||||||||    
T  30148670 caatttgtgatcaaaatacatata 30148647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 6563099 - 6563033
Alignment:
Q  83 tttttatggattccttaaacaatgttcttaggacacttgttagcaagatcctaatagtaataaccat 149  Q
    ||||||||| ||||||||||||| | |||| |||| |||||| ||||||||||||  ||||||||||    
T  6563099 tttttatgggttccttaaacaatatccttaagacatttgttaacaagatcctaattttaataaccat 6563033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 398
Target Start/End: Original strand, 9186184 - 9186246
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    |||||||||||| |||| |||||||||||||||| ||  |||||||| | |||||||||||||    
T  9186184 aaatcgtgtcacatttttaccaaatcgtgacacgattctcttctttgtattttcttcagtttt 9186246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 398
Target Start/End: Original strand, 25957204 - 25957266
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    ||||||||||||||||| |||||||||||||||| ||  ||||||||   |||||||||||||    
T  25957204 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgttttttcttcagtttt 25957266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 398
Target Start/End: Original strand, 37280437 - 37280499
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    |||||||||| |||||| |||||||||||||||| ||  |||||||| | |||||||||||||    
T  37280437 aaatcgtgtcgcgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagtttt 37280499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 398
Target Start/End: Original strand, 42369450 - 42369512
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    ||||||||||||||||| ||||||||||| |||| ||  |||||||| | |||||||||||||    
T  42369450 aaatcgtgtcacgtttttaccaaatcgtggcacgattctcttctttgtattttcttcagtttt 42369512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 42371961 - 42371891
Alignment:
Q  56 taacttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaa 128  Q
    |||||||||||||||| | |||| || ||||   || |||||||||||||||||||||| |||||||||||||    
T  42371961 taacttatattttcaatataaacttttttttc--gggttccttaaacaatgttcttagggcacttgttagcaa 42371891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 15335879 - 15335811
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagc 126  Q
    |||| ||||||||||||||| ||||| ||| ||| ||||||||||||||  ||| || |||||||||||    
T  15335879 acttgtattttcaagacaaaaattctctttgtgggttccttaaacaatgcccttggggcacttgttagc 15335811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 459
Target Start/End: Complemental strand, 8888001 - 8887880
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||| ||||||| |||||||||||||||| ||  ||| |||| | ||| ||||| ||||||||| ||  |||||| ||| ||| ||||| |||||    
T  8888001 aaatcgtgttacgtttttaccaaatcgtgacacgattctcttgtttgtatttttttcag-ttttctactctt-ttgctgcataagttgacttgtgaactc 8887904  T
Q  436 caaaatatgataaaactacatata 459  Q
    |||  | |||| ||||||||||||    
T  8887903 caatttgtgatcaaactacatata 8887880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 459
Target Start/End: Original strand, 11348635 - 11348756
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    |||| |||||||||||| |||||||||||||||| ||   ||||||| | ||||||||| ||||||||| ||  |||||| ||| ||| ||||| |||||    
T  11348635 aaattgtgtcacgtttttaccaaatcgtgacacgattctgttctttgtattttcttcag-ttttctactctt-ttgctgcataagttgccttgtgaactc 11348732  T
Q  436 caaaatatgataaaactacatata 459  Q
    |||  | |||| ||| ||||||||    
T  11348733 caatttgtgatcaaaatacatata 11348756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 4428824 - 4428778
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaa 104  Q
    |||||||| ||||||||| |  |||||||||||||||||||||||||    
T  4428824 acttatatcttcaagacataatttctttttatggattccttaaacaa 4428778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 4652078 - 4652008
Alignment:
Q  59 cttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaag 129  Q
    |||| ||||||||||||||  |||   |||||||||| |||| |||||| ||||||||||| |||||||||    
T  4652078 cttacattttcaagacaaaacttcaacttatggattctttaatcaatgtccttaggacactggttagcaag 4652008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 24234441 - 24234379
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    |||||||||||| |||| |||| ||||||||||| ||  |||||||| | |||||||||||||    
T  24234441 aaatcgtgtcacatttttaccagatcgtgacacgattctcttctttgtattttcttcagtttt 24234379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 398
Target Start/End: Original strand, 43208650 - 43208712
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    ||||| ||||||||||| |||||||||||||||| ||  |||||||| | |||||||| ||||    
T  43208650 aaatcatgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcaatttt 43208712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 487
Target Start/End: Complemental strand, 12219184 - 12219072
Alignment:
Q  375 cttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactccaaaatatgataaaactacatatacaattacgtaatgac 474  Q
    |||||||||| | |||||| |||||||  | ||  |||||| ||||| | ||||| ||||||||| |||||| |   |||| | | ||||||||||||||    
T  12219184 cttctttgcattctcttcaatttttctgttctttttgctgcataaatggccttgtgaactccaaattatgatcagtttacacagaaaattacgtaatgac 12219085  T
Q  475 aagatgtcatcaa 487  Q
     ||||||||||||    
T  12219084 gagatgtcatcaa 12219072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 372
Target Start/End: Complemental strand, 29867686 - 29867650
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttt 372  Q
    |||||||||||||||||  ||||||||||||||||||    
T  29867686 aaatcgtgtcacgtttttcccaaatcgtgacacgttt 29867650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 39791577 - 39791505
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    |||| ||||||||| ||| |  |||||||| ||||||| |||||||||   |||||||||||||||| |||||    
T  39791577 acttgtattttcaaaacataatttctttttgtggattctttaaacaatacccttaggacacttgttaacaaga 39791505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 4e-39; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 336 - 486
Target Start/End: Original strand, 11126455 - 11126605
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    |||||||||||| |||||  |||||||||||||||||| |||||||| | |||||||||||||||| |||||| |||||||||| ||| ||||| || ||    
T  11126455 aaatcgtgtcacattttctacaaatcgtgacacgttttgcttctttgtattttcttcagtttttctgcttttcttgctgcttaagttgccttgtgaattc 11126554  T
Q  436 caaaatatgataaaactacatatacaattacgtaatgacaagatgtcatca 486  Q
    |||||| |||| ||| |||||||| |||||||||||||| |||||||||||    
T  11126555 caaaatgtgatcaaaatacatataaaattacgtaatgacgagatgtcatca 11126605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 337 - 486
Target Start/End: Original strand, 22561886 - 22562034
Alignment:
Q  337 aatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactcc 436  Q
    ||||||||||| ||||  |  |||||||||||||||||  |||||||| ||||||||||||||||||||||| |||||||||| ||| ||||| || |||    
T  22561886 aatcgtgtcacatttttgcagaatcgtgacacgttttctatctttgcattttcttcagtttttctacttttcttgctgcttaagttgccttgtgaaatcc 22561985  T
Q  437 aaaatatgataaaactacatatacaattacgtaatgacaagatgtcatca 486  Q
    ||||| |||| ||| |||||||| |||||||||||||| ||||| |||||    
T  22561986 aaaatgtgat-aaattacatataaaattacgtaatgacgagatgccatca 22562034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 336 - 459
Target Start/End: Original strand, 11188676 - 11188797
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | ||||||||| ||||||||| ||  |||||| ||| ||| ||||| |||||    
T  11188676 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcag-ttttctactctt-ttgctgcataagttgccttgtgaactc 11188773  T
Q  436 caaaatatgataaaactacatata 459  Q
    |||  | |||| ||||||||||||    
T  11188774 caatttgtgatcaaactacatata 11188797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 486
Target Start/End: Complemental strand, 31880287 - 31880140
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttg-----cactttcttcagtttttctacttttcatgctgcttaaattgtcttgta 430  Q
    ||||||||||| ||||| ||||||||||||||||||||| |||||||      | |||||||||||||||| ||||||        ||| |||  ||||     
T  31880287 aaatcgtgtcatgtttttaccaaatcgtgacacgttttctttctttgtattttaatttcttcagtttttctgcttttc--------taagttgcgttgtg 31880196  T
Q  431 aactccaaaatatgataaaactacatatacaattacgtaatgacaagatgtcatca 486  Q
    ||||||||||| |||| ||| |||||| | |||||||||||||| |||||||||||    
T  31880195 aactccaaaatgtgatcaaattacatagaaaattacgtaatgacgagatgtcatca 31880140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 401
Target Start/End: Original strand, 26898629 - 26898693
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttct 401  Q
    ||||||||||||||||| | |||||||||||||| ||| |||||||||| ||||||||||||||||    
T  26898629 aaatcgtgtcacgtttttagcaaatcgtgacacg-tttgcttctttgcattttcttcagtttttct 26898693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 31631897 - 31631969
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    ||||||||||||||||||||| |||||||| |   |||||||||||||| ||||||||||||  |||||||||    
T  31631897 acttatattttcaagacaaactttctttttgtaagttccttaaacaatgctcttaggacactcattagcaaga 31631969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 130
Target Start/End: Complemental strand, 40087 - 40020
Alignment:
Q  63 tattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    |||||||||||||||  |||||| | ||| ||||||||||||||| |||||| |||||||||||||||    
T  40087 tattttcaagacaaaatttctttatgtgggttccttaaacaatgtccttagggcacttgttagcaaga 40020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 459
Target Start/End: Complemental strand, 2378594 - 2378473
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| ||||||| |||||||| ||  |||||||| | ||||||||||||  ||||| ||  |||||| ||| ||| ||||| |||||    
T  2378594 aaatcgtgtcacgtttttaccaaattgtgacacgattctcttctttgtattttcttcagtttc-ctactcttt-tgctgcataagttgccttgtgaactc 2378497  T
Q  436 caaaatatgataaaactacatata 459  Q
    ||| || |||| ||||||||||||    
T  2378496 caatatgtgatcaaactacatata 2378473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 11401621 - 11401559
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | |||||||||||||    
T  11401621 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagtttt 11401559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 398
Target Start/End: Original strand, 11730095 - 11730157
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | |||||||||||||    
T  11730095 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagtttt 11730157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 15543374 - 15543312
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | |||||||||||||    
T  15543374 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagtttt 15543312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 28229959 - 28229897
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | |||||||||||||    
T  28229959 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagtttt 28229897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 128
Target Start/End: Complemental strand, 7984641 - 7984544
Alignment:
Q  31 tgtagttatgatttttagaagagtgtaacttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaa 128  Q
    ||||||||||| ||||| | | || | |||| |||||||||||||||  |||||||| ||| ||| ||||||||||| || || ||||||||||||||    
T  7984641 tgtagttatgacttttacatgtgtttgacttgtattttcaagacaaagtttctttttgtgggttcattaaacaatgtcctcagaacacttgttagcaa 7984544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 357 - 487
Target Start/End: Original strand, 18856804 - 18856934
Alignment:
Q  357 aaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactccaaaatatgat-aaaactaca 455  Q
    ||||||||||| | ||| |||||||| | ||||| |||  |||||||||||| |||| | ||| |||  |||| ||||||||||| |||| |||| ||||    
T  18856804 aaatcgtgacaagatttgcttctttgtattttctacagaatttctacttttcttgctacataagttgctttgtgaactccaaaatgtgataaaaagtaca 18856903  T
Q  456 tatacaattacgtaatgacaagatgtcatcaa 487  Q
    || | |||||||||||||| |||| |||||||    
T  18856904 ta-aaaattacgtaatgacgagatttcatcaa 18856934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 486
Target Start/End: Complemental strand, 24399545 - 24399395
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    |||||||| || ||||||  | |||||||||||| ||| |||||||| | ||||| |||  ||||| ||||||  |||||  || |||  |||| ||||     
T  24399545 aaatcgtggcatgttttctgccaatcgtgacacgatttgcttctttgtattttctacagaatttctgcttttctcgctgcacaagttgctttgtgaactg 24399446  T
Q  436 caaaatatgat-aaaactacatatacaattacgtaatgacaagatgtcatca 486  Q
    |||||| |||| |||| |||||| | |||||||||||||| |||||||||||    
T  24399445 caaaatgtgataaaaagtacata-aaaattacgtaatgacgagatgtcatca 24399395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 484
Target Start/End: Complemental strand, 13941909 - 13941780
Alignment:
Q  355 ccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactccaaaatatgataaaactac 454  Q
    ||||||||||||||| |||| ||||||| | ||| |||| |||||||||| ||  |||||| ||| ||| ||||| |||||||   | |||| ||| |||    
T  13941909 ccaaatcgtgacacgatttctttctttgtattttattca-tttttctactctttttgctgcataagttgccttgtgaactccactttgtgatcaaaatac 13941811  T
Q  455 atatacaa-ttacgtaatgacaagatgtcat 484  Q
    ||||| || |||||||||||  |||||||||    
T  13941810 atataaaagttacgtaatgatgagatgtcat 13941780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 486
Target Start/End: Complemental strand, 4511775 - 4511714
Alignment:
Q  425 cttgtaaactccaaaatatgataaaactacatatacaattacgtaatgacaagatgtcatca 486  Q
    ||||| ||||||||  | |||| ||| |||||||| |||||||||||||| |||||||||||    
T  4511775 cttgtgaactccaatttgtgatcaaaatacatataaaattacgtaatgacgagatgtcatca 4511714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 486
Target Start/End: Original strand, 11193481 - 11193541
Alignment:
Q  425 cttgtaaactccaaaatatgataaaactacatatacaattacgtaatgacaagatgtcatca 486  Q
    ||||| ||||||||| ||| |||||  |||||| | ||||||||||||||||||||||||||    
T  11193481 cttgtgaactccaaa-tatcataaatttacataaaaaattacgtaatgacaagatgtcatca 11193541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 130
Target Start/End: Original strand, 31490421 - 31490494
Alignment:
Q  57 aacttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    |||||||||||||||||  || ||||| || ||||||||||||| || ||| ||||||| ||| |||| |||||    
T  31490421 aacttatattttcaagatcaaaattctattaatggattccttaatcattgtacttaggatactagttaacaaga 31490494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 127
Target Start/End: Complemental strand, 33193826 - 33193757
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagca 127  Q
    ||||||||||| |||| |||  ||||||||||  |||| ||||||||| || ||||| ||||||||||||    
T  33193826 acttatatttttaagataaaatttctttttatttattcattaaacaatattattagggcacttgttagca 33193757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 6100741 - 6100813
Alignment:
Q  63 tattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaagatccta 135  Q
    ||||||||||||| |  ||| |||| ||| ||||||||||||||  |||||| ||||||||| ||||| ||||    
T  6100741 tattttcaagacataatttccttttgtgggttccttaaacaatgcccttagggcacttgttaacaagacccta 6100813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 471
Target Start/End: Complemental strand, 13004482 - 13004414
Alignment:
Q  403 cttttcatgctgcttaaattgtcttgtaaactccaaaatatgataaaactacatatacaattacgtaat 471  Q
    |||||| ||||||||||  |  ||||| ||||| ||||||| |||||| |||||||| |||||||||||    
T  13004482 cttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaatacatataaaattacgtaat 13004414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 45)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 324 - 486
Target Start/End: Complemental strand, 27091350 - 27091188
Alignment:
Q  324 ttttgctttgctaaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattg 423  Q
    ||||||||||| |||||||||||||||||   |||||  ||||||||||| |||||||| ||||| |||||||| |||||||||| |||| ||||| ||     
T  27091350 ttttgctttgccaaatcgtgtcacgttttatgcaaattatgacacgtttttcttctttgtactttattcagtttatctacttttcttgctacttaagtta 27091251  T
Q  424 tcttgtaaactccaaaatatgataaaactacatatacaattacgtaatgacaagatgtcatca 486  Q
    |||||| ||||||||||| |||| ||| |||||||| |||||||||||||| |||||||||||    
T  27091250 tcttgtgaactccaaaatgtgatcaaaatacatataaaattacgtaatgacgagatgtcatca 27091188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 323 - 488
Target Start/End: Original strand, 28008780 - 28008946
Alignment:
Q  323 tttttgctttgctaaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaatt 422  Q
    ||||||| |||| |||||| |||||||||| |||||||| ||||||||||| ||| |||||| |||||||||||||||| |||||| |||||| ||| ||    
T  28008780 tttttgccttgccaaatcgcgtcacgtttttaccaaatcatgacacgtttttcttttttgcattttcttcagtttttctgcttttcttgctgcataagtt 28008879  T
Q  423 gtcttgtaaactccaaaatatgataaaactacat-atacaattacgtaatgacaagatgtcatcaag 488  Q
    | ||||| ||||||||||| |||| ||| ||||| | | ||||||||||||||||||||||||||||    
T  28008880 gccttgtgaactccaaaatgtgatcaaattacataaaaaaattacgtaatgacaagatgtcatcaag 28008946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 336 - 486
Target Start/End: Complemental strand, 46884400 - 46884250
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||  | ||  |||||| ||| ||| ||||| |||||    
T  46884400 aaatcgtgtcacgtttttaccaaatcgtgacacgttttgcttctttgcattttcttcagtttttctgttctttttgctgcataagttgccttgtgaactc 46884301  T
Q  436 caaaatatgataaaactacatatacaattacgtaatgacaagatgtcatca 486  Q
    |||||| |||| |   |||| | | |||||||||||||| |||||||||||    
T  46884300 caaaatgtgatcagtttacacagaaaattacgtaatgacgagatgtcatca 46884250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 336 - 486
Target Start/End: Complemental strand, 17140878 - 17140729
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||| ||||||||||| ||||||||||||||||||||| ||||||| | |||||| || ||||||||| ||  |||||| ||| ||| ||||| |||||    
T  17140878 aaatcttgtcacgtttttaccaaatcgtgacacgttttctttctttgtattttctttag-ttttctactctttttgctgcataagttgccttgtgaactc 17140780  T
Q  436 caaaatatgataaaactacatatacaattacgtaatgacaagatgtcatca 486  Q
    |||| | |||| ||| |||||||| |||||||||||||  |||||||||||    
T  17140779 caaattgtgatcaaaatacatataaaattacgtaatgatgagatgtcatca 17140729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 336 - 486
Target Start/End: Complemental strand, 54719494 - 54719345
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| ||||||||||||||||||| | ||||||| | ||||||||| |||||| || ||  |||||| ||| ||| ||||| |||||    
T  54719494 aaatcgtgtcacgtttttaccaaatcgtgacacgtttgctttctttgtattttcttcag-ttttctgctctttttgctgcataagttgccttgtgaactc 54719396  T
Q  436 caaaatatgataaaactacatatacaattacgtaatgacaagatgtcatca 486  Q
     ||| | |||| ||| |||||||| |||||||||||||| |||||||||||    
T  54719395 taaattgtgatcaaaatacatataaaattacgtaatgactagatgtcatca 54719345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 336 - 487
Target Start/End: Original strand, 46985893 - 46986043
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| || |||||||||||||||||| ||||||| | ||||||||  |||||| || ||  |||||| ||| ||| ||||| |||||    
T  46985893 aaatcgtgtcacgtttttacaaaatcgtgacacgttttctttctttgtattttcttca-attttctgctctttttgctgcataagttgccttgtgaactc 46985991  T
Q  436 caaaatatgataaaactacatatacaattacgtaatgacaagatgtcatcaa 487  Q
    |||| | |||| ||| |||||||| |||||||||||||| |||||| |||||    
T  46985992 caaattgtgatcaaaatacatataaaattacgtaatgacgagatgttatcaa 46986043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 336 - 486
Target Start/End: Original strand, 32367874 - 32368024
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    |||||||| |||||||||   ||||||||||||| ||| |||||||||| ||||| |||  ||||| |||||| |||||| ||| |||  |||| |||||    
T  32367874 aaatcgtggcacgttttctggaaatcgtgacacgatttgcttctttgcattttctacagaatttctgcttttcttgctgcataagttgctttgtgaactc 32367973  T
Q  436 caaaatatgat-aaaactacatatacaattacgtaatgacaagatgtcatca 486  Q
    |||||| |||| |||| |||||| | ||||||||||||||||||||||||||    
T  32367974 caaaatgtgataaaaagtacata-aaaattacgtaatgacaagatgtcatca 32368024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 336 - 485
Target Start/End: Original strand, 32288071 - 32288217
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    |||||||| |||||||| ||||||||||||||||||||| ||||||| |||||||||||||||| | || ||  || ||| ||| ||| ||||| |||||    
T  32288071 aaatcgtgacacgtttttaccaaatcgtgacacgttttctttctttgtactttcttcagttttt-tgctctttttggtgcataagttgccttgtgaactc 32288169  T
Q  436 caaaatatgataaaactacatatacaattacgtaatgacaagatgtcatc 485  Q
    |||| |||||| ||| |||  | | |||||| ||||||||||||||||||    
T  32288170 caaattatgatgaaaatac--aaaaaattacctaatgacaagatgtcatc 32288217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 336 - 489
Target Start/End: Complemental strand, 11784213 - 11784060
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||| |||    ||| ||||||||||||||  |||||||| ||| ||||| |||||| |||||| |||||||||| ||| ||||| || ||    
T  11784213 aaatcgtgtcacgatttggtaaaaacgtgacacgttttcaatctttgcattttgttcagcttttctgcttttcttgctgcttaagttgccttgtgaattc 11784114  T
Q  436 caaaatatgataaaactacatatacaattacgtaatgacaagatgtcatcaaga 489  Q
    |||| | |||| ||  |||||| |  ||||||||||||||||||||||||||||    
T  11784113 caaattgtgatcaatttacataaaagattacgtaatgacaagatgtcatcaaga 11784060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 336 - 486
Target Start/End: Complemental strand, 52987853 - 52987703
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    |||||||||| |||||| |||||||||||||||||||| |||||||| | |||||||||||||||| || ||  |||||| ||  ||||||| | |||||    
T  52987853 aaatcgtgtctcgtttttaccaaatcgtgacacgtttt-cttctttgtattttcttcagtttttctgctctttttgctgcatatgttgtcttttgaactc 52987755  T
Q  436 caaaatatgataaaactacatat-acaattacgtaatgacaagatgtcatca 486  Q
    ||   | |||| ||| ||||||| | |||||||||||||| |||||||||||    
T  52987754 cactttgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 52987703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 337 - 486
Target Start/End: Original strand, 22417580 - 22417729
Alignment:
Q  337 aatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactcc 436  Q
    ||||||| |||||||||   ||||||||||||| ||| |||||||| | ||||| |||  ||||| |||||| |||||| ||| |||  |||| ||||||    
T  22417580 aatcgtggcacgttttctagaaatcgtgacacgatttgcttctttgtattttctacagaatttctgcttttcttgctgcataagttgctttgtgaactcc 22417679  T
Q  437 aaaatatgat-aaaactacatatacaattacgtaatgacaagatgtcatca 486  Q
    ||||| |||| |||| |||||| | ||||||||||||||||||||||||||    
T  22417680 aaaatgtgataaaaagtacata-aaaattacgtaatgacaagatgtcatca 22417729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 337 - 486
Target Start/End: Original strand, 12561980 - 12562129
Alignment:
Q  337 aatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactcc 436  Q
    |||||||||||||||| |||||||||||||||| |||||||||||| | |||||||| ||||||| || ||  |||||| ||| ||| ||||| ||||||    
T  12561980 aatcgtgtcacgtttttaccaaatcgtgacacgatttccttctttgtattttcttca-tttttctgctctt-ttgctgcataagttgccttgtgaactcc 12562077  T
Q  437 aaaatatgataaaactacatat--acaattacgtaatgacaagatgtcatca 486  Q
    |   | |||| ||| |||||||  | |||||||||||||| |||||||||||    
T  12562078 actttgtgatcaaaatacatataaaaaattacgtaatgacgagatgtcatca 12562129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 336 - 484
Target Start/End: Original strand, 15196048 - 15196196
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||| | ||||| ||| ||||| ||||||||| | ||||||| | |||||||||||||| |   |||| ||||||  || ||| ||||| |||||    
T  15196048 aaatcgtgttatgtttttaccgaatcgggacacgtttgcattctttgtattttcttcagtttttatgtctttcttgctgcacaagttgccttgtgaactc 15196147  T
Q  436 caaaatatgataaaactacatatacaattacgtaatgacaagatgtcat 484  Q
    |||||| |||| ||| |||||| | |||||||||||||| |||||||||    
T  15196148 caaaatgtgatcaaattacatagaaaattacgtaatgacgagatgtcat 15196196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 336 - 487
Target Start/End: Original strand, 17040768 - 17040919
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    |||||||||||||||||  |  ||| || ||| | ||| |||||||| | |||||| ||||||||   ||||| || ||||||| ||  ||||| |||||    
T  17040768 aaatcgtgtcacgttttagcagaattgtcacatggtttgcttctttgtattttctttagtttttcagtttttcttgttgcttaagtttccttgtgaactc 17040867  T
Q  436 caaaatatgataaaactacatatacaattacgtaatgacaagatgtcatcaa 487  Q
    |||||| |||| ||| |||||||| |||||||||||||| ||||||||||||    
T  17040868 caaaatgtgatcaaaatacatataaaattacgtaatgacgagatgtcatcaa 17040919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 337 - 487
Target Start/End: Complemental strand, 22010818 - 22010668
Alignment:
Q  337 aatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactcc 436  Q
    ||||||| |||||||||   ||||||||||||| ||| |||||||| | ||||| || | ||||| |||||| |||||| ||| | |  |||| ||||||    
T  22010818 aatcgtggcacgttttctagaaatcgtgacacgatttgcttctttgtattttctacattatttctgcttttcttgctgcataagtagctttgtgaactcc 22010719  T
Q  437 aaaatatgat-aaaactacatatacaattacgtaatgacaagatgtcatcaa 487  Q
    ||||| |||| |||| |||||| | |||||||||||||||||||||||||||    
T  22010718 aaaatgtgataaaaagtacata-aaaattacgtaatgacaagatgtcatcaa 22010668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 336 - 459
Target Start/End: Complemental strand, 43926283 - 43926162
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||| ||||||| ||  |||||||| | ||||||||| ||||||||| ||  |||||| ||| ||||||||| |||||    
T  43926283 aaatcgtgtcacgtttttaccaaatcttgacacgattctcttctttgtattttcttcag-ttttctactctt-ttgctgcataagttgtcttgtgaactc 43926186  T
Q  436 caaaatatgataaaactacatata 459  Q
    |||  | |||| ||||||||||||    
T  43926185 caatttgtgatcaaactacatata 43926162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 336 - 459
Target Start/End: Complemental strand, 54723189 - 54723068
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | ||||||||| ||||||||| ||  |||||| ||| ||| ||||| |||||    
T  54723189 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcag-ttttctactctt-ttgctgcataagttgacttgtgaactc 54723092  T
Q  436 caaaatatgataaaactacatata 459  Q
    |||  | |||| ||||||||||||    
T  54723091 caatttgtgatcaaactacatata 54723068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 459
Target Start/End: Complemental strand, 25584140 - 25584019
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | ||||||||| ||||||||| ||  |||||| ||| ||| ||||| |||||    
T  25584140 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcag-ttttctactctt-ttgctgcataatttgccttgtgaactc 25584043  T
Q  436 caaaatatgataaaactacatata 459  Q
    |||  | |||| ||| ||||||||    
T  25584042 caatttgtgatcaaaatacatata 25584019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 459
Target Start/End: Complemental strand, 30690183 - 30690062
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | ||||||||| ||||||||| ||  |||||| ||| ||  |||||||||||    
T  30690183 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcag-ttttctactctt-ttgctgcataagtttccttgtaaactc 30690086  T
Q  436 caaaatatgataaaactacatata 459  Q
    |||  | |||| ||| ||||||||    
T  30690085 caatttgtgatcaaaatacatata 30690062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 459
Target Start/End: Original strand, 49743666 - 49743787
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | ||||||||| ||||||||| ||  |||||| ||| ||  ||||| |||||    
T  49743666 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcag-ttttctactctt-ttgctgcataagttaccttgtgaactc 49743763  T
Q  436 caaaatatgataaaactacatata 459  Q
    |||  |||||| ||| ||||||||    
T  49743764 caatttatgatcaaaatacatata 49743787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 2873012 - 2872950
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | |||||||||||||    
T  2873012 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagtttt 2872950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 7486019 - 7485957
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | |||||||||||||    
T  7486019 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagtttt 7485957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 30403292 - 30403370
Alignment:
Q  56 taacttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaagatcct 134  Q
    |||||| || ||||||||||||  ||||||||||||||| |||| |||||||  |||||||||||||||  ||||||||    
T  30403292 taacttgtagtttcaagacaaattttctttttatggatttcttatacaatgtcgttaggacacttgttaataagatcct 30403370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 459
Target Start/End: Complemental strand, 11189986 - 11189865
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||||||||||| ||  ||||||||   ||||||||| ||||||||| ||  |||||| ||| ||| ||||| |||||    
T  11189986 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgttttttcttcag-ttttctactctt-ttgctgcataagttgccttgtgaactc 11189889  T
Q  436 caaaatatgataaaactacatata 459  Q
    |||  | |||| ||| ||||||||    
T  11189888 caatttgtgatcaaaatacatata 11189865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 45249432 - 45249511
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaagatcctaat 137  Q
    |||| ||||||||||||| |  |||||||| ||| ||||||||||||||  |||||| ||||||||| ||||| ||||||    
T  45249432 acttgtattttcaagacataatttctttttgtgggttccttaaacaatgcccttagggcacttgttaacaagaccctaat 45249511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 47595569 - 47595636
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttag 125  Q
    |||||||||||||| |||   ||| |||||||||||| |||||||||| || ||||||||||||||||    
T  47595569 acttatattttcaaaacacggattgtttttatggattacttaaacaatttttttaggacacttgttag 47595636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 459
Target Start/End: Original strand, 50462296 - 50462417
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| ||||||| |||||||| ||  |||||||| | ||||||||| ||||||||| ||  |||||| ||| ||| ||||| |||||    
T  50462296 aaatcgtgtcacgtttttaccaaattgtgacacgattctcttctttgtattttcttcag-ttttctactctt-ttgctgcataagttgacttgtgaactc 50462393  T
Q  436 caaaatatgataaaactacatata 459  Q
    |||  | |||  ||||||||||||    
T  50462394 caatttgtgaacaaactacatata 50462417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 2778174 - 2778112
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    ||||| ||||||||||| |||||||||||||||| ||  |||||||| | |||||||||||||    
T  2778174 aaatcatgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagtttt 2778112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 25122437 - 25122475
Alignment:
Q  93 ttccttaaacaatgttcttaggacacttgttagcaagat 131  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  25122437 ttccttaaacaatgctcttaggacacttgttagcaagat 25122475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 45895828 - 45895766
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    ||||||||||||||||| ||||||||||| |||| ||  |||||||| | |||||||||||||    
T  45895828 aaatcgtgtcacgtttttaccaaatcgtggcacgattctcttctttgtattttcttcagtttt 45895766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 27214008 - 27214085
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaagatccta 135  Q
    |||| |||||| ||||||||  |||||||| ||  ||||||||||||||| ||||| |||||||||| ||||| ||||    
T  27214008 acttgtatttttaagacaaagtttctttttgtgtgttccttaaacaatgtccttagaacacttgttaacaagacccta 27214085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 336 - 373
Target Start/End: Original strand, 32288050 - 32288087
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgtttt 373  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  32288050 aaatcgtgtcacgtttttaccaaatcgtgacacgtttt 32288087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 372
Target Start/End: Original strand, 30220754 - 30220790
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttt 372  Q
    ||||||||||||||||| |||||||||||||||||||    
T  30220754 aaatcgtgtcacgtttttaccaaatcgtgacacgttt 30220790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 128
Target Start/End: Original strand, 9247188 - 9247227
Alignment:
Q  89 tggattccttaaacaatgttcttaggacacttgttagcaa 128  Q
    ||||||||||||||||||||||||| ||| ||||||||||    
T  9247188 tggattccttaaacaatgttcttagtacatttgttagcaa 9247227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 459
Target Start/End: Complemental strand, 24124946 - 24124825
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| || |||||||| |||| ||  |||||||| | ||||||||| ||||||||| ||  |||||| ||| ||| ||||| |||||    
T  24124946 aaatcgtgtcacgtttttacaaaatcgtggcacgattctcttctttgtattttcttcag-ttttctactctt-ttgctgcataagttgccttgtgaactc 24124849  T
Q  436 caaaatatgataaaactacatata 459  Q
    |||  | |||| ||| ||||||||    
T  24124848 caatttgtgatcaaaatacatata 24124825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 42226025 - 42225958
Alignment:
Q  60 ttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagca 127  Q
    |||| ||||||||| |||  ||||| | || |||||||||||||||||  ||||||||||||||||||    
T  42226025 ttatgttttcaagataaaatttcttataatagattccttaaacaatgtctttaggacacttgttagca 42225958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 130
Target Start/End: Complemental strand, 44790653 - 44790606
Alignment:
Q  83 tttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    ||||||||||||||||||||||||||||||   |||||||||| ||||    
T  44790653 tttttatggattccttaaacaatgttcttaaatcacttgttagtaaga 44790606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 52041571 - 52041516
Alignment:
Q  80 ttctttttatggattccttaaacaatgttcttaggacacttgttagcaagatccta 135  Q
    |||| ||||||| ||| |||||||||||  ||||||||||||||||||||| ||||    
T  52041571 ttctatttatggtttcattaaacaatgtctttaggacacttgttagcaagacccta 52041516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 2774952 - 2774890
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    ||||||||||||||||| |||||||||||||| | ||  || ||||| | |||||||||||||    
T  2774952 aaatcgtgtcacgtttttaccaaatcgtgacatgattctctgctttgtattttcttcagtttt 2774890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 398
Target Start/End: Original strand, 12535818 - 12535880
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    |||| |||||||||||| ||||||||||| |||| ||  |||||||| | |||||||||||||    
T  12535818 aaattgtgtcacgtttttaccaaatcgtggcacgattctcttctttgtattttcttcagtttt 12535880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 48993408 - 48993330
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaagatcctaa 136  Q
    |||| ||||||||||||| |  ||| | || ||| ||||||||||||||  |||||| ||||||||||||||| |||||    
T  48993408 acttttattttcaagacataatttcctcttgtgggttccttaaacaatgcccttagggcacttgttagcaagaccctaa 48993330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 8108257 - 8108192
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgtt 123  Q
    ||||||||||||||| || |  |||||||| ||  ||||||||||||||| |||||| ||||||||    
T  8108257 acttatattttcaaggcataatttctttttttgtgttccttaaacaatgtccttagggcacttgtt 8108192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 26043456 - 26043501
Alignment:
Q  56 taacttatattttcaagacaaacattctttttatggattccttaaa 101  Q
    ||||||||||||||||||||||   ||||||| |||||||||||||    
T  26043456 taacttatattttcaagacaaaacctctttttgtggattccttaaa 26043501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 44455134 - 44455061
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaagat 131  Q
    |||| |||||||||||||||  |||||| | ||  || ||||||||| || ||||| |||||||||||||||||    
T  44455134 acttgtattttcaagacaaaatttctttctgtgagtttcttaaacaacgtccttagaacacttgttagcaagat 44455061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 372
Target Start/End: Complemental strand, 29810685 - 29810650
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttt 372  Q
    |||||||||||||||||| ||||||||||||||||||    
T  29810685 aaatcgtgtcacgttttc-ccaaatcgtgacacgttt 29810650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 7e-38; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 336 - 488
Target Start/End: Original strand, 21280527 - 21280679
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||| ||||||||  |||||||||||||||||| ||| |||| | |||||||||||||||| |||||| |||||||||| ||| ||||| |||||    
T  21280527 aaatcgtgttacgttttcttcaaatcgtgacacgttttacttatttgtattttcttcagtttttctgcttttcttgctgcttaagttgccttgtgaactc 21280626  T
Q  436 caaaatatgataaaactacatatacaattacgtaatgacaagatgtcatcaag 488  Q
    |||||| |||| ||| |||||||| || || ||||||||||||||||||||||    
T  21280627 caaaatgtgatcaaaatacatataaaaataagtaatgacaagatgtcatcaag 21280679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 358 - 486
Target Start/End: Complemental strand, 13196186 - 13196058
Alignment:
Q  358 aatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactccaaaatatgataaaactacata 457  Q
    |||||||||||||||| |||||||  | |||||||||||||||| |||||| |||||| ||| ||||||||| ||||||||||| |||| ||| ||||||    
T  13196186 aatcgtgacacgttttgcttctttttattttcttcagtttttctgcttttcttgctgcataagttgtcttgtgaactccaaaatgtgatcaaaatacata 13196087  T
Q  458 tacaattacgtaatgacaagatgtcatca 486  Q
    || ||||| |||||||| |||||||||||    
T  13196086 taaaattatgtaatgacgagatgtcatca 13196058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 336 - 486
Target Start/End: Complemental strand, 31284030 - 31283880
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||| | |||||||||||||||| || ||  |||||| ||| ||||||||| |||||    
T  31284030 aaatcgtgtcacgtttttaccaaatcgtgacacgtttt-cttctttgtattttcttcagtttttctgctctttttgctgcataagttgtcttgtgaactc 31283932  T
Q  436 caaaatatgataaaactacatat-acaattacgtaatgacaagatgtcatca 486  Q
    ||   | |||| ||| ||||||| | |||||||||||||| |||||||||||    
T  31283931 cactttgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 31283880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 336 - 486
Target Start/End: Complemental strand, 8911011 - 8910862
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||| ||||||| || ||  || ||| ||| ||  ||||| |||||    
T  8911011 aaatcgtgtcacgttttcaccaaatcgtgacacgttttctttctttgtattttcttca-tttttctgctctttttgatgcataagtttccttgtgaactc 8910913  T
Q  436 caaaatatgataaaactacatatacaattacgtaatgacaagatgtcatca 486  Q
    |||| | |||| ||| |||||||| ||||| |||||||| |||||||||||    
T  8910912 caaattgtgatcaaaatacatataaaattatgtaatgacgagatgtcatca 8910862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 336 - 488
Target Start/End: Complemental strand, 2559949 - 2559796
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttcta-cttttcatgctgcttaaattgtcttgtaaact 434  Q
    ||||||||||| |||||  |  |||||||||||||||| |||||||| | |||||||||||||| |  |||||| |||||| ||| ||| ||||| || |    
T  2559949 aaatcgtgtcatgttttagcagaatcgtgacacgttttgcttctttgtattttcttcagttttttttgcttttcttgctgcataagttgccttgtgaaat 2559850  T
Q  435 ccaaaatatgataaaactacatatacaattacgtaatgacaagatgtcatcaag 488  Q
    ||||||| |||| ||| |||||||| ||||| ||||||||||||||||||||||    
T  2559849 ccaaaatgtgatcaaattacatataaaattatgtaatgacaagatgtcatcaag 2559796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 337 - 487
Target Start/End: Original strand, 23621066 - 23621216
Alignment:
Q  337 aatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactcc 436  Q
    ||||||| |||||||||   ||||||||||||| ||| |||||||| | ||||| |||  ||||| |||||| |||||| ||| |||  |||| ||||||    
T  23621066 aatcgtggcacgttttctagaaatcgtgacacgatttgcttctttgtattttctacagaatttctgcttttcttgctgcataagttgctttgtgaactcc 23621165  T
Q  437 aaaatatgataaaac-tacatatacaattacgtaatgacaagatgtcatcaa 487  Q
    |||||  |||||||| |||||| | |||||||||||||||||||||||||||    
T  23621166 aaaatgcgataaaacgtacata-aaaattacgtaatgacaagatgtcatcaa 23621216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 386 - 486
Target Start/End: Complemental strand, 17930329 - 17930230
Alignment:
Q  386 tttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactccaaaatatgataaaactacatatacaattacgtaatgacaagatgtcatc 485  Q
    ||||||||||||| || |||||| |||||||||| ||| ||||| ||||||||||| |||| ||| |||||||| ||||| |||||||| ||||||||||    
T  17930329 tttcttcagtttt-ctgcttttcttgctgcttaagttgccttgtgaactccaaaatgtgatgaaaatacatataaaattatgtaatgacgagatgtcatc 17930231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 13177800 - 13177899
Alignment:
Q  31 tgtagttatgatttttagaagagtgtaacttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    ||||||||||| ||||| | | || | |||| |||||||||||||||| ||||||||   ||||||||||||||||  ||||||||||||||||||||||    
T  13177800 tgtagttatgacttttacatgtgtttgacttgtattttcaagacaaactttctttttgaagattccttaaacaatgcccttaggacacttgttagcaaga 13177899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 336 - 486
Target Start/End: Complemental strand, 33418993 - 33418844
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||   ||||||||||||||||||| |||||||||| ||||||||||||| || || ||  |||||| |||  || | ||| |||||    
T  33418993 aaatcgtgtcacgtttgttccaaatcgtgacacgtttt-cttctttgcattttcttcagttttgctgctctttttgctgcataagatgccctgtgaactc 33418895  T
Q  436 caaaatatgataaaactacatatacaattacgtaatgacaagatgtcatca 486  Q
    |||  | |||| ||| |||||||| ||| | |||||||| |||||||||||    
T  33418894 caatttgtgatcaaaatacatataaaatcatgtaatgactagatgtcatca 33418844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 336 - 459
Target Start/End: Complemental strand, 16953157 - 16953036
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | ||||||||| ||||||||| ||  |||||| ||| ||| ||||| |||||    
T  16953157 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcag-ttttctactctt-ttgctgcataagttgccttgtgaactc 16953060  T
Q  436 caaaatatgataaaactacatata 459  Q
    |||  | |||| ||||||||||||    
T  16953059 caatttgtgatcaaactacatata 16953036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 336 - 486
Target Start/End: Complemental strand, 23593462 - 23593313
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||||||||||| | | |||||||| | ||||||||| |||||| || ||  |||||| ||| ||| ||||| |||||    
T  23593462 aaatcgtgtcacgtttttaccaaatcgtgacacgatct-cttctttgtattttcttcag-ttttctgctctttttgctgcataagttgccttgtgaactc 23593365  T
Q  436 caaaatatgataaaactacatat-acaattacgtaatgacaagatgtcatca 486  Q
    ||   | |||| ||| ||||||| | |||||||||||||| |||||||||||    
T  23593364 cactttgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 23593313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 38573336 - 38573264
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    ||||||||||||||| || |  |||||||||||| |||||||||||||||||||||  ||||||||| |||||    
T  38573336 acttatattttcaaggcataatttctttttatgggttccttaaacaatgttcttagagcacttgttaacaaga 38573264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 140
Target Start/End: Complemental strand, 32967773 - 32967666
Alignment:
Q  33 tagttatgatttttagaagagtgtaacttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaagatc 132  Q
    ||||||||||||||| | |||| | |||| |||||| |||| |||  |||| |||||| |||||||||||||||| |||| |||| |||||| |||||      
T  32967773 tagttatgatttttacatgagtttgacttgtattttgaagataaaatttctctttatgaattccttaaacaatgtccttatgacatttgttaccaagact 32967674  T
Q  133 ctaatagt 140  Q
    ||||||||    
T  32967673 ctaatagt 32967666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 11611590 - 11611639
Alignment:
Q  81 tctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    ||||||||||| ||||||||||||||| |||||||||||||||| |||||    
T  11611590 tctttttatgggttccttaaacaatgtccttaggacacttgttaacaaga 11611639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 10498974 - 10499019
Alignment:
Q  337 aatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttg 382  Q
    |||||||||||||||| ||||||||||| |||| ||||||||||||    
T  10498974 aatcgtgtcacgtttttaccaaatcgtggcacgatttccttctttg 10499019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 12763332 - 12763404
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    ||||||||||||||  || || |||||||||||| ||||||||||||||   |||||||| |||||| |||||    
T  12763332 acttatattttcaaagcatactttctttttatgggttccttaaacaatgcctttaggacatttgttaacaaga 12763404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 13018533 - 13018461
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    |||||||||||||||| | |  ||  |||||||| ||||||||||||||  |||||||||||||||| |||||    
T  13018533 acttatattttcaagatatatttttcttttatgggttccttaaacaatgcccttaggacacttgttaacaaga 13018461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 44395684 - 44395634
Alignment:
Q  80 ttctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    |||||||||||| ||||||||||||||  |||| ||||||||||| |||||    
T  44395684 ttctttttatgggttccttaaacaatgcccttatgacacttgttaacaaga 44395634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 27134648 - 27134685
Alignment:
Q  93 ttccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    |||||||||||||||  |||||||||||||||||||||    
T  27134648 ttccttaaacaatgtctttaggacacttgttagcaaga 27134685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 376
Target Start/End: Complemental strand, 33419134 - 33419093
Alignment:
Q  335 taaatcgtgtcacgttttcaccaaatcgtgacacgttttcct 376  Q
    |||||||||||||||||| |  ||||||||||||||||||||    
T  33419134 taaatcgtgtcacgttttaagtaaatcgtgacacgttttcct 33419093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 24999461 - 24999533
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    |||| ||||||||||||| |  |||||||| ||| |||||| |||||||  |||||| ||||||||| |||||    
T  24999461 acttgtattttcaagacataatttctttttgtgggttcctttaacaatgcccttagggcacttgttaacaaga 24999533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 372
Target Start/End: Complemental strand, 43036240 - 43036205
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttt 372  Q
    |||||||||||||||||| ||||||||||||||||||    
T  43036240 aaatcgtgtcacgttttc-ccaaatcgtgacacgttt 43036205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 336 - 486
Target Start/End: Complemental strand, 11195038 - 11194888
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||||  | ||||||||||| |||| |||||||||| |||||||||||||||| || ||  |||||| ||| ||| ||||| |||||    
T  11195038 aaatcgtgtcacgttttctgccaatcgtgacacattttgcttctttgcattttcttcagtttttctgctctttttgctgcataagttgccttgtgaactc 11194939  T
Q  436 caaaatatgataaaactacatatacaattacgtaatgacaagatgtcatca 486  Q
    |||  |||||| ||| |||||||| |||||||||||||| |||||||||||    
T  11194938 caatttatgatcaaaatacatataaaattacgtaatgacgagatgtcatca 11194888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 336 - 487
Target Start/End: Complemental strand, 30391935 - 30391784
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||  ||||||||||||||||||||| ||||||||| |||||||||||||||| || ||  || ||| ||| ||  ||||| |||||    
T  30391935 aaatcgtgtcacgtttataccaaatcgtgacacgttttctttctttgcattttcttcagtttttctgctctttttgttgcataagtttccttgtgaactc 30391836  T
Q  436 caaaatatgataaaactacatatacaattacgtaatgacaagatgtcatcaa 487  Q
    |||  | |||| ||| |||||||| |||||||||||||| |||| |||||||    
T  30391835 caatttgtgatcaaaatacatataaaattacgtaatgacgagatatcatcaa 30391784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 336 - 486
Target Start/End: Original strand, 29545633 - 29545783
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||| |  | ||  |||||| ||| | | ||||| |||||    
T  29545633 aaatcgtgtcacgtttttaccaaatcgtgacacgttttgcttctttgcattttcttcagtttttttgttctttttgctgcataagtggccttgtgaactc 29545732  T
Q  436 caaaatatgataaaactacatatacaattacgtaatgacaagatgtcatca 486  Q
    |||||| | || |   |||| | | ||||||||||||||||||||||||||    
T  29545733 caaaatgtaatcagtttacacagaaaattacgtaatgacaagatgtcatca 29545783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 336 - 486
Target Start/End: Complemental strand, 25961455 - 25961305
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| ||||||| ||||||||||||| | | ||| | ||||||||| |||||| || ||  |||||| ||| ||| ||||| |||||    
T  25961455 aaatcgtgtcacgtttttaccaaatagtgacacgttttcttcccttgtattttcttcag-ttttctgctctttttgctgcataagttgccttgtgaactc 25961357  T
Q  436 caaaatatgataaaactacatat-acaattacgtaatgacaagatgtcatca 486  Q
    |||| | |||| ||| ||||||| | |||||||||||||| |||||||||||    
T  25961356 caaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 25961305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 9093653 - 9093731
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaagatcctaa 136  Q
    ||||||||||||||| ||||  |||||||||||| ||||||||||||||| |||||||||||||||| ||||| |||||    
T  9093653 acttatattttcaaggcaaaatttctttttatgggttccttaaacaatgtccttaggacacttgttaacaagaccctaa 9093731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 337 - 486
Target Start/End: Original strand, 18673809 - 18673958
Alignment:
Q  337 aatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactcc 436  Q
    ||||||| |||||||||   ||||||||||||| ||| |||||||| | ||||| |||  ||||| |||||| |||||| ||| |||  |||| ||||||    
T  18673809 aatcgtggcacgttttctagaaatcgtgacacgatttgcttctttgtattttctacagaatttctgcttttcttgctgcataagttgctttgtgaactcc 18673908  T
Q  437 aaaatatgat-aaaactacatatacaattacgtaatgacaagatgtcatca 486  Q
    ||||| |||| |||| |||||| | ||||||||||||||||||||||||||    
T  18673909 aaaatgtgataaaaagtacata-aaaattacgtaatgacaagatgtcatca 18673958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 31861623 - 31861697
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaagatc 132  Q
    |||||||||||||||||| |  ||||||||||||||||||||||||||  ||||||||||||||||| |||||||    
T  31861623 acttatattttcaagacataatttctttttatggattccttaaacaatactcttaggacacttgttaacaagatc 31861697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 336 - 486
Target Start/End: Original strand, 40494104 - 40494254
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||| || ||||||||| ||| ||| | ||||||| | |||||| || ||  |||||| ||| ||| ||||| |||||    
T  40494104 aaatcgtgtcacgtttttaccaaatcatggcacgttttctttccttgtattttcttc-ggttttctgctctttttgctgcataagttgccttgtgaactc 40494202  T
Q  436 caaaatatgataaaactacatat-acaattacgtaatgacaagatgtcatca 486  Q
    |||| | |||| ||| ||||||| | |||||||||||||| |||||||||||    
T  40494203 caaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 40494254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 3121103 - 3121037
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgtta 124  Q
    |||||||||||||||||| |  |||||||||||| |||||||||||||| |||||||||||||||||    
T  3121103 acttatattttcaagacataatttctttttatgggttccttaaacaatgctcttaggacacttgtta 3121037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 43361860 - 43361929
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagca 127  Q
    |||||| |||| |||| |||  ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43361860 acttatgtttttaagataaagtttcttttaatggattccttaaacaatgttcttaggacacttgttagca 43361929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 336 - 459
Target Start/End: Original strand, 38284256 - 38284377
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | ||||||||| ||||||||| ||  |||||| ||||||| ||||| |||||    
T  38284256 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcag-ttttctactatt-ttgctgcataaattgccttgtgaactc 38284353  T
Q  436 caaaatatgataaaactacatata 459  Q
    |||  | |||| ||| ||||||||    
T  38284354 caatttgtgatcaaaatacatata 38284377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 336 - 459
Target Start/End: Complemental strand, 48636868 - 48636747
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | ||||||||| ||||||||| ||  |||||| ||| ||||||||| |||||    
T  48636868 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcag-ttttctactctt-ttgctgcataagttgtcttgtgaactc 48636771  T
Q  436 caaaatatgataaaactacatata 459  Q
    |||  | |||| ||| ||||||||    
T  48636770 caatttgtgatcaaaatacatata 48636747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 10097993 - 10098059
Alignment:
Q  59 cttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttag 125  Q
    |||||||||||||||||||  |||| ||| ||||||||||||||||| || ||||||||||||||||    
T  10097993 cttatattttcaagacaaaatttctctttgtggattccttaaacaatatttttaggacacttgttag 10098059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 130
Target Start/End: Complemental strand, 29927376 - 29927279
Alignment:
Q  33 tagttatgatttttagaagagtgtaacttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    ||||||||| ||||| | | || | |||| ||||| |||||||||  |||||||| ||||||||||||||||||  |||||| |||||||||||||||    
T  29927376 tagttatgacttttatatgtgtttgacttgtatttccaagacaaagtttctttttgtggattccttaaacaatgcccttagggcacttgttagcaaga 29927279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 459
Target Start/End: Original strand, 34018540 - 34018661
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | ||||||||| ||||||||| ||  |||||| ||| ||| ||| | |||||    
T  34018540 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcag-ttttctactctt-ttgctgcataagttgccttctgaactc 34018637  T
Q  436 caaaatatgataaaactacatata 459  Q
    |||  | |||| ||||||||||||    
T  34018638 caatttgtgatcaaactacatata 34018661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 459
Target Start/End: Original strand, 48416289 - 48416410
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | ||||||||| ||||||||| ||  |||||| ||| ||  ||||| |||||    
T  48416289 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcag-ttttctactctt-ttgctgcataagttaacttgtgaactc 48416386  T
Q  436 caaaatatgataaaactacatata 459  Q
    |||  | |||| ||||||||||||    
T  48416387 caatttgtgatcaaactacatata 48416410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 459
Target Start/End: Original strand, 52531674 - 52531795
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||||||||| | ||  |||||||| | ||||||||| ||||||||| ||  |||||| ||| ||| ||||| |||||    
T  52531674 aaatcgtgtcacgtttttaccaaatcgtgacatgattctcttctttgtattttcttcag-ttttctactctt-ttgctgcataagttgacttgtgaactc 52531771  T
Q  436 caaaatatgataaaactacatata 459  Q
    |||  | |||| ||||||||||||    
T  52531772 caatttgtgatcaaactacatata 52531795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 46737479 - 46737405
Alignment:
Q  56 taacttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    ||||||||||||||||||||    |||||||| ||  ||||||||||||||| |||| |||||||||||||||||    
T  46737479 taacttatattttcaagacatgatttctttttgtgtgttccttaaacaatgtccttaagacacttgttagcaaga 46737405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 31370135 - 31370071
Alignment:
Q  62 atattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagca 127  Q
    ||||||||||||||||| |||||||  || |||||||||||||| |||||| ||||||||||||||    
T  31370135 atattttcaagacaaactttcttttc-tgaattccttaaacaatattcttaagacacttgttagca 31370071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 25231578 - 25231626
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatg 106  Q
    |||||||||||||||||| |  |||||||||||||||||||||||||||    
T  25231578 acttatattttcaagacataatttctttttatggattccttaaacaatg 25231626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 29235601 - 29235673
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    |||| |||||||||||||||  |||||||| ||| ||||||| | |||| |||||||||||||||||| ||||    
T  29235601 acttctattttcaagacaaaatttctttttgtgggttccttagataatgctcttaggacacttgttagtaaga 29235673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 459
Target Start/End: Complemental strand, 24150055 - 24149934
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| | |||||||||||||| ||  |||||||| | ||||||||| ||||||||| ||  |||||| ||| ||| ||||| |||||    
T  24150055 aaatcgtgtcacgtttttatcaaatcgtgacacgattctcttctttgtattttcttcag-ttttctactctt-ttgctgcataagttgccttgtgaactc 24149958  T
Q  436 caaaatatgataaaactacatata 459  Q
    |||  | |||| ||| ||||||||    
T  24149957 caatttgtgatcaaaatacatata 24149934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 459
Target Start/End: Complemental strand, 39501031 - 39500910
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||||||||||| ||   ||||||| | ||||||||| ||||||||| ||  |||||| ||| ||| ||||| |||||    
T  39501031 aaatcgtgtcacgtttttaccaaatcgtgacacgattctgttctttgtattttcttcag-ttttctactctt-ttgctgcataagttgccttgtgaactc 39500934  T
Q  436 caaaatatgataaaactacatata 459  Q
    |||  | |||| ||| ||||||||    
T  39500933 caatttgtgatcaaaatacatata 39500910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 39494718 - 39494656
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    ||||||||||||||||| || ||||||||||||| ||  |||||||| | |||||||||||||    
T  39494718 aaatcgtgtcacgtttttacaaaatcgtgacacgattctcttctttgtattttcttcagtttt 39494656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 43142099 - 43142033
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgtta 124  Q
    |||||||||||||||||| |  |||||||| ||| |||||||||||||  |||||| ||||||||||    
T  43142099 acttatattttcaagacataatttctttttgtgggttccttaaacaatagtcttagaacacttgtta 43142033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 128
Target Start/End: Complemental strand, 49013877 - 49013780
Alignment:
Q  30 gtgtagttatgatttttagaagagtgtaacttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaa 128  Q
    |||||||||||||||||| | |  | ||||||||||||||||||||||  || ||||||| |  |||||||||||||   ||||| |||||||||||||    
T  49013877 gtgtagttatgatttttatatgtatttaacttatattttcaagacaaaatttatttttataggatccttaaacaatgcatttagg-cacttgttagcaa 49013780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 16958434 - 16958482
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatg 106  Q
    |||||||||||||||||| |  |||||||||||||||||||||| ||||    
T  16958434 acttatattttcaagacataatttctttttatggattccttaaataatg 16958482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 52270509 - 52270437
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    |||||||||||||||||| |  ||| |||| ||| ||||||||||||||  |||||| ||||||||| |||||    
T  52270509 acttatattttcaagacatattttccttttgtgggttccttaaacaatgcccttagggcacttgttaacaaga 52270437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 43432409 - 43432338
Alignment:
Q  63 tattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaagatcct 134  Q
    |||||||||||||||  ||||| || | ||||  ||||||||||  |||||| |||||||||||||||||||    
T  43432409 tattttcaagacaaagtttcttcttgtagattttttaaacaatgcccttagggcacttgttagcaagatcct 43432338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 127
Target Start/End: Complemental strand, 8291106 - 8291037
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagca 127  Q
    |||| ||||| |||||||||  ||| || |||| |||||||||||||||  |||||| ||||||||||||    
T  8291106 acttgtatttccaagacaaattttccttatatgtattccttaaacaatgcccttagggcacttgttagca 8291037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 35808735 - 35808686
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgt 107  Q
    |||||||||||||||| | |  |||||||||||| |||||||||||||||    
T  35808735 acttatattttcaagatataatttctttttatgggttccttaaacaatgt 35808686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 124
Target Start/End: Complemental strand, 41621952 - 41621891
Alignment:
Q  63 tattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgtta 124  Q
    ||||||||||||| |  |||||||| ||| ||||||||||||||  |||||| |||||||||    
T  41621952 tattttcaagacataatttctttttgtgggttccttaaacaatgcccttagggcacttgtta 41621891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 2168498 - 2168426
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    |||| |||||||| |||| |  || ||||||||| ||| ||||||||||| |||||| ||||||||| |||||    
T  2168498 acttgtattttcaggacataatttatttttatgggttctttaaacaatgtccttagggcacttgttaacaaga 2168426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 30694352 - 30694396
Alignment:
Q  57 aacttatattttcaagacaaacattctttttatggattccttaaa 101  Q
    |||||||||||||||||||||  |||| ||||||| |||||||||    
T  30694352 aacttatattttcaagacaaaatttctatttatggtttccttaaa 30694396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 372
Target Start/End: Original strand, 34570765 - 34570800
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttt 372  Q
    |||||||||||||||||| ||||||||||||||||||    
T  34570765 aaatcgtgtcacgttttc-ccaaatcgtgacacgttt 34570800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 41735471 - 41735399
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    |||| ||||||||||||| |  |||||||| ||  || |||||||||| |||||||| ||||||||| |||||    
T  41735471 acttgtattttcaagacataatttctttttgtgagtttcttaaacaatattcttagggcacttgttaacaaga 41735399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 323 - 487
Target Start/End: Complemental strand, 18952139 - 18951975
Alignment:
Q  323 tttttgctttgctaaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaatt 422  Q
    |||| ||||||| |||||||||||||||||  |  |||||||||||||||| |||||||| | |||||||||||||||   ||||| |||||||||| ||    
T  18952139 ttttggctttgccaaatcgtgtcacgttttagcagaatcgtgacacgttttgcttctttgtattttcttcagtttttccgtttttcttgctgcttaagtt 18952040  T
Q  423 gtcttgtaaactccaaaatatgataaaactacatatacaattacgtaatgacaagatgtcatcaa 487  Q
    | ||||| |||| |||||| |||| ||| |||||||| |||||| ||||||  ||||||||||||    
T  18952039 gccttgtgaacttcaaaatgtgatcaaattacatataaaattacataatgatgagatgtcatcaa 18951975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 336 - 486
Target Start/End: Original strand, 26908139 - 26908290
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgtttt--ccttctttgcactttcttcagtttt-tctacttttcatgctgcttaaattgtcttgtaaa 432  Q
    ||||||||||||||||| ||||||||||||||||||||  | ||||||| | |||||||| |||| | | |||||  |||||| ||| ||||||||| ||    
T  26908139 aaatcgtgtcacgtttttaccaaatcgtgacacgtttttgctttctttgtattttcttcaattttctgttctttt--tgctgcataagttgtcttgtgaa 26908236  T
Q  433 ctccaaaatatgataaaactacatatacaattacgtaatgacaagatgtcatca 486  Q
    ||||||| |||||| ||| |||||| | |||||||||||||| |||||||||||    
T  26908237 ctccaaattatgatcaaaatacataaaaaattacgtaatgactagatgtcatca 26908290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 336 - 486
Target Start/End: Complemental strand, 40582612 - 40582463
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| ||||||||  ||||||||||| ||||||| | ||||||||| |||||| || ||  |||||| ||| ||| ||||| |||||    
T  40582612 aaatcgtgtcacgtttttaccaaatctagacacgttttctttctttgtattttcttcag-ttttctgctctttttgctgcataagttgccttgtgaactc 40582514  T
Q  436 caaaatatgataaaactacatatacaattacgtaatgacaagatgtcatca 486  Q
    |||| |||||| ||| |  ||||| |||||||||||||||| |||||||||    
T  40582513 caaattatgatcaaaatgaatataaaattacgtaatgacaatatgtcatca 40582463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 366 - 486
Target Start/End: Complemental strand, 26292205 - 26292086
Alignment:
Q  366 cacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactccaaaatatgataaaactacatatacaatta 465  Q
    ||||||||| ||||||| | |||||||||||||||| |||||| |||||| ||| ||| ||||| ||||||||||| |||| ||| |||||| | |||||    
T  26292205 cacgttttctttctttgtattttcttcagtttttctgcttttcttgctgcataagttgccttgtgaactccaaaatgtgatcaaattacataga-aatta 26292107  T
Q  466 cgtaatgacaagatgtcatca 486  Q
    ||||||||| ||| |||||||    
T  26292106 cgtaatgacgagacgtcatca 26292086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 336 - 487
Target Start/End: Complemental strand, 23043549 - 23043398
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||||    |||||||||||||||| |||||||||| ||||||||||||| || || ||  |||||| ||| ||| | ||| |||||    
T  23043549 aaatcgtgtcacgttttctgtcaatcgtgacacgttttgcttctttgcattttcttcagttttactgctctttttgctgcataagttgccctgtgaactc 23043450  T
Q  436 caaaatatgataaaactacatatacaattacgtaatgacaagatgtcatcaa 487  Q
    |||  | | |  ||| |||||||| |||||||||||||| ||||||||||||    
T  23043449 caatttgtaaacaaaatacatataaaattacgtaatgacgagatgtcatcaa 23043398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 337 - 486
Target Start/End: Original strand, 34133723 - 34133872
Alignment:
Q  337 aatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactcc 436  Q
    ||||||| |||||||||   ||||||||||||| ||| |||||||| | ||||| |||  ||||| |||||| |||||| ||| |||  |||| ||||||    
T  34133723 aatcgtggcacgttttctagaaatcgtgacacgatttgcttctttgtattttctacagaatttctgcttttcttgctgcataagttgctttgtgaactcc 34133822  T
Q  437 aaaatatgat-aaaactacatatacaattacgtaatgacaagatgtcatca 486  Q
    ||||| |||| |||| |||||| | ||||||||||||||||||||||||||    
T  34133823 aaaatgtgataaaaagtacata-aaaattacgtaatgacaagatgtcatca 34133872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 337 - 486
Target Start/End: Original strand, 34143973 - 34144122
Alignment:
Q  337 aatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactcc 436  Q
    ||||||| |||||||||   ||||||||||||| ||| |||||||| | ||||| |||  ||||| |||||| |||||| ||| |||  |||| ||||||    
T  34143973 aatcgtggcacgttttctagaaatcgtgacacgatttgcttctttgtattttctacagaatttctgcttttcttgctgcataagttgctttgtgaactcc 34144072  T
Q  437 aaaatatgat-aaaactacatatacaattacgtaatgacaagatgtcatca 486  Q
    ||||| |||| |||| |||||| | ||||||||||||||||||||||||||    
T  34144073 aaaatgtgataaaaagtacata-aaaattacgtaatgacaagatgtcatca 34144122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 37447306 - 37447378
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    ||||||||||||||||||||  |||||||| | | |||||||||||||||||||||| |||||||||||||||    
T  37447306 acttatattttcaagacaaagtttctttttgtaggttccttaaacaatgttcttagggcacttgttagcaaga 37447378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 57 - 145
Target Start/End: Original strand, 35626657 - 35626745
Alignment:
Q  57 aacttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaagatcctaatagtaataa 145  Q
    ||||||||||||||| |||||  |||| || ||||||||||||| || ||| |||||| |||| |||||||||| ||||||| ||||||    
T  35626657 aacttatattttcaaaacaaaatttctattaatggattccttaaccattgtccttagggcactagttagcaagaccctaatattaataa 35626745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 1056557 - 1056625
Alignment:
Q  63 tattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaagat 131  Q
    |||||||||| ||||  |||||||||||  || ||||||||||| ||||| ||||||||||||||||||    
T  1056557 tattttcaaggcaaaatttctttttatgagtttcttaaacaatgctcttaagacacttgttagcaagat 1056625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 34338950 - 34338878
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    ||||||||||||||| || |  |||||||||||| ||| ||||||||||| |||||| ||||||||| |||||    
T  34338950 acttatattttcaaggcataatttctttttatgggttctttaaacaatgtccttagggcacttgttaacaaga 34338878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 486
Target Start/End: Original strand, 12059252 - 12059401
Alignment:
Q  337 aatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactcc 436  Q
    |||||||||| ||||  ||||||| |||||||| ||| |||||||| | |||||||| ||||||| || ||  || ||| ||| ||| ||||| ||||||    
T  12059252 aatcgtgtcatgtttgtaccaaattgtgacacgattttcttctttgtattttcttca-tttttctgctctttttgttgcataagttgccttgtgaactcc 12059350  T
Q  437 aaaatatgataaaactacatatacaa-ttacgtaatgacaagatgtcatca 486  Q
    |   | |||| ||| |||||||| || |||||||||||| |||||||||||    
T  12059351 actttgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 12059401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 16054443 - 16054513
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaa 128  Q
    |||| |||||| || |||||  |||||||| ||| || |||||||||||| ||||||||||||||||||||    
T  16054443 acttgtattttaaaaacaaaatttctttttgtgggtttcttaaacaatgtccttaggacacttgttagcaa 16054513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 34831126 - 34831080
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttg 382  Q
    ||||||||||||||||| |||||||||||||||| ||| ||||||||    
T  34831126 aaatcgtgtcacgtttttaccaaatcgtgacacgattttcttctttg 34831080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 398
Target Start/End: Original strand, 41307286 - 41307348
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | |||||| ||||||    
T  41307286 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttctttagtttt 41307348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 336 - 397
Target Start/End: Complemental strand, 12087321 - 12087260
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagttt 397  Q
    ||||||||||||||||| ||||||||||| |||| ||  |||||||| | ||||||||||||    
T  12087321 aaatcgtgtcacgtttttaccaaatcgtggcacgattctcttctttgtattttcttcagttt 12087260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 337 - 398
Target Start/End: Original strand, 26753462 - 26753523
Alignment:
Q  337 aatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    |||||||||||||||| | |||||||||||||| ||  |||||||| | |||||||||||||    
T  26753462 aatcgtgtcacgtttttatcaaatcgtgacacgattctcttctttgtattttcttcagtttt 26753523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 15476932 - 15476860
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    |||||||||||||||||| |  | | |||||||  ||||||||||||||| ||||||| |||||||| |||||    
T  15476932 acttatattttcaagacatatttcccttttatgcgttccttaaacaatgtccttaggatacttgttaacaaga 15476860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 20913604 - 20913529
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaagatcct 134  Q
    |||| |||||||||||||||  ||||| || | |||| |||||| ||||| |||||||||||||||||||| |||||    
T  20913604 acttgtattttcaagacaaag-ttcttcttgtagatttcttaaaaaatgtccttaggacacttgttagcaaaatcct 20913529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 2415240 - 2415189
Alignment:
Q  79 attctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    ||||||||| ||||||| |||| |||||| |||| |||||||||||||||||    
T  2415240 attctttttgtggattctttaagcaatgtccttatgacacttgttagcaaga 2415189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 10911116 - 10911187
Alignment:
Q  63 tattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaagatcct 134  Q
    ||||||||||| |||| |||||||||||  || |||||||||| | |||| | ||||||||| |||||||||    
T  10911116 tattttcaagataaactttctttttatgtgttacttaaacaatatccttatggcacttgttaacaagatcct 10911187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 130
Target Start/End: Complemental strand, 36487253 - 36487186
Alignment:
Q  63 tattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    ||||||||| ||| |  |||||||| ||| ||||||||||||||||||||   |||||||||||||||    
T  36487253 tattttcaatacataatttctttttgtgggttccttaaacaatgttcttatagcacttgttagcaaga 36487186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 20920949 - 20920887
Alignment:
Q  63 tattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttag 125  Q
    |||||||||||||||  ||||| || | |||| |||||||||||| |||||| ||||||||||    
T  20920949 tattttcaagacaaagtttcttcttgtagatttcttaaacaatgtccttagggcacttgttag 20920887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 22088522 - 22088572
Alignment:
Q  80 ttctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    |||||||| ||| ||||||||||||||  |||||| |||||||||||||||    
T  22088522 ttctttttgtgggttccttaaacaatgcccttagggcacttgttagcaaga 22088572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 372
Target Start/End: Complemental strand, 533586 - 533551
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttt 372  Q
    |||||||||||||||||| ||||||||||||||||||    
T  533586 aaatcgtgtcacgttttc-ccaaatcgtgacacgttt 533551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 20894247 - 20894315
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagc 126  Q
    |||| |||||||||||||||  ||||| || | |||| |||||||||||  |||||| |||||||||||    
T  20894247 acttgtattttcaagacaaagtttcttcttgtagatttcttaaacaatgcccttagggcacttgttagc 20894315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 28992594 - 28992662
Alignment:
Q  59 cttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagca 127  Q
    ||||| |||| |||| |||  ||||||| ||||||| |||||| |||||| ||| ||||||||||||||    
T  28992594 cttatgtttttaagataaaatttcttttaatggatttcttaaataatgttattatgacacttgttagca 28992662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 28995872 - 28995940
Alignment:
Q  59 cttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagca 127  Q
    ||||| |||| |||| |||  ||||||| ||||||| |||||| |||||| ||| ||||||||||||||    
T  28995872 cttatgtttttaagataaaatttcttttaatggatttcttaaataatgttattatgacacttgttagca 28995940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 32292290 - 32292362
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    |||||||||||||| ||  |  || ||||||| | |||||||||||||   ||||||||||||||||||||||    
T  32292290 acttatattttcaaaacgtaatttatttttataggttccttaaacaatacccttaggacacttgttagcaaga 32292362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 398
Target Start/End: Original strand, 41877526 - 41877586
Alignment:
Q  338 atcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    ||||||||||||||| |||||||||||||||| ||  | ||||||   |||||||||||||    
T  41877526 atcgtgtcacgtttttaccaaatcgtgacacgattctcctctttgttttttcttcagtttt 41877586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 336 - 486
Target Start/End: Original strand, 673748 - 673899
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttc-tacttttcatgctgcttaaattgtcttgtaaact 434  Q
    |||| ||||||||||||   |||||||||||||||||| |||||||||| |||||||| |||||| | |||||| |||||| ||| |||  |||| ||||    
T  673748 aaattgtgtcacgtttttggcaaatcgtgacacgtttttcttctttgcattttcttcaatttttcctgcttttcttgctgcataagttgctttgtgaact 673847  T
Q  435 ccaaaatatgataaaactacatatacaattacgtaatgacaagatgtcatca 486  Q
    ||||||| |||| ||| |||||||| |||||||||||||| |||||||||||    
T  673848 ccaaaatgtgatcaaattacatataaaattacgtaatgacgagatgtcatca 673899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 338 - 486
Target Start/End: Original strand, 906448 - 906596
Alignment:
Q  338 atcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactcca 437  Q
    ||||||||||| ||||  | |||| ||||||||||| |||||||||| ||||||||||||||||  | ||  |||||| ||| ||  ||||| || ||||    
T  906448 atcgtgtcacgctttctgccaatcatgacacgttttgcttctttgcattttcttcagtttttctgttctttttgctgcataagtttccttgtgaattcca 906547  T
Q  438 aaatatgataaaactacatatacaattacgtaatgacaagatgtcatca 486  Q
    |  | |||| ||| |||||||| |||||||||||||| |||||||||||    
T  906548 atttgtgatcaaaatacatataaaattacgtaatgacgagatgtcatca 906596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 459
Target Start/End: Original strand, 37184624 - 37184745
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | ||||||||| ||||||||| ||  |||||| ||| ||| ||| | |||||    
T  37184624 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcag-ttttctactctt-ttgctgcataagttgacttatgaactc 37184721  T
Q  436 caaaatatgataaaactacatata 459  Q
    |||  | |||| ||||||||||||    
T  37184722 caatttgtgatcaaactacatata 37184745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 398
Target Start/End: Original strand, 3797564 - 3797626
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | |||||||||||||    
T  3797564 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagtttt 3797626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 398
Target Start/End: Original strand, 23022684 - 23022745
Alignment:
Q  337 aatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    |||||||||||||||| |||||||||||||||| ||  |||||||| | |||||||||||||    
T  23022684 aatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagtttt 23022745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 459
Target Start/End: Complemental strand, 28110442 - 28110321
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||||||||| | ||  |||||||| | ||||||||  ||||||||| ||  |||||| ||| ||| ||||| |||||    
T  28110442 aaatcgtgtcacgtttttaccaaatcgtgacatgattctcttctttgtattttcttca-attttctactctt-ttgctgcataagttgacttgtgaactc 28110345  T
Q  436 caaaatatgataaaactacatata 459  Q
    |||  | |||| ||||||||||||    
T  28110344 caatttgtgatcaaactacatata 28110321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 35365598 - 35365664
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgtta 124  Q
    |||||||||||||||| | |  ||||| ||||||||| |||||||||| |||||||| |||||||||    
T  35365598 acttatattttcaagatataatttcttattatggatttcttaaacaattttcttagggcacttgtta 35365664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 336 - 397
Target Start/End: Complemental strand, 20398236 - 20398175
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagttt 397  Q
    ||||||||||||||||| ||||||||||| |||| ||  |||||||| | ||||||||||||    
T  20398236 aaatcgtgtcacgtttttaccaaatcgtggcacgattctcttctttgtattttcttcagttt 20398175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 3527779 - 3527829
Alignment:
Q  80 ttctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    |||||||| |||||||||||||||||| ||||||   ||||||||||||||    
T  3527779 ttctttttgtggattccttaaacaatgctcttagagtacttgttagcaaga 3527829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 21824306 - 21824236
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaa 128  Q
    |||| |||||||||||||||  ||||| || | |||| |||||||||||| ||||||| |||| |||||||    
T  21824306 acttgtattttcaagacaaagtttcttcttgtagatttcttaaacaatgtccttaggagacttattagcaa 21824236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 42410268 - 42410334
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgtta 124  Q
    |||| ||||||||||||| |  |||||||| ||| ||||||||||||||  |||||| |||||||||    
T  42410268 acttgtattttcaagacataatttctttttgtgggttccttaaacaatgcccttagggcacttgtta 42410334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 45940779 - 45940718
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | |||||||| ||||    
T  45940779 aaatcgtgtcacgtttt-accaaatcgtgacacgattctcttctttgtattttcttcaatttt 45940718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 373
Target Start/End: Original strand, 28220577 - 28220613
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgtttt 373  Q
    |||||||||||||||||| |||||||||||||||||||    
T  28220577 aaatcgtgtcacgttttc-ccaaatcgtgacacgtttt 28220613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 894816 - 894752
Alignment:
Q  66 tttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    |||||||||| |  ||| |||| ||| ||||||||||||||  |||||| |||||||||||||||    
T  894816 tttcaagacataatttccttttgtgggttccttaaacaatgcccttagggcacttgttagcaaga 894752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 2574902 - 2574866
Alignment:
Q  91 gattccttaaacaatgttcttaggacacttgttagca 127  Q
    |||||||||||||||||||||||  ||||||||||||    
T  2574902 gattccttaaacaatgttcttagagcacttgttagca 2574866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 372
Target Start/End: Original strand, 30476799 - 30476834
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttt 372  Q
    |||||||||||||||||| ||||||||||||||||||    
T  30476799 aaatcgtgtcacgttttc-ccaaatcgtgacacgttt 30476834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 336 - 486
Target Start/End: Original strand, 9133482 - 9133631
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||| | |||||| ||||||||| || ||  ||| || ||| ||  |||||||||||    
T  9133482 aaatcgtgtcacgtttttaccaaatcgtgacacgtttt-cttctttgtattttcttaagtttttctgctctttttgcggcataagttaccttgtaaactc 9133580  T
Q  436 caaaatatgataaaactacatatacaattacgtaatgacaagatgtcatca 486  Q
    |||  | |||| ||| |||||||| |||||||||||||| |||||||||||    
T  9133581 caatttgtgatcaaaatacatataaaattacgtaatgacgagatgtcatca 9133631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 336 - 487
Target Start/End: Complemental strand, 20593628 - 20593477
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| ||||||||||||||||||||| | | ||  | ||||||||| |||||| || ||  |||||| ||| ||||||||| |||||    
T  20593628 aaatcgtgtcacgtttttaccaaatcgtgacacgttttcgtcccttctattttcttcag-ttttctgctctttttgctgcataagttgtcttgtgaactc 20593530  T
Q  436 caaaatatgataaaactacatat-acaattacgtaatgacaagatgtcatcaa 487  Q
    |||| | |||| ||| ||||||| | |||||||||||||| |||| |||||||    
T  20593529 caaattgtgatcaaaatacatataaaaattacgtaatgacgagatttcatcaa 20593477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 357 - 487
Target Start/End: Original strand, 26145291 - 26145421
Alignment:
Q  357 aaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactccaaaatatgat-aaaactaca 455  Q
    ||||||||||||| ||| |||||||| | ||||| |||  ||||| |||||| |||||| ||| |||  |||| ||||||||||| |||| |||| ||||    
T  26145291 aaatcgtgacacgatttgcttctttgtattttctgcagaatttctgcttttcttgctgcataagttgctttgtgaactccaaaatgtgataaaaagtaca 26145390  T
Q  456 tatacaattacgtaatgacaagatgtcatcaa 487  Q
    || | |||||||||||||||||||||||||||    
T  26145391 ta-aaaattacgtaatgacaagatgtcatcaa 26145421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 486
Target Start/End: Original strand, 26136891 - 26137040
Alignment:
Q  337 aatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactcc 436  Q
    ||||||| |||||||||   ||||||||||||| ||| |||||||| | ||||| |||  ||||| |||||| |||||| ||| |||  |||| ||||||    
T  26136891 aatcgtggcacgttttctagaaatcgtgacacgatttgcttctttgtattttctgcagaatttctgcttttcttgctgcataagttggtttgtgaactcc 26136990  T
Q  437 aaaatatgat-aaaactacatatacaattacgtaatgacaagatgtcatca 486  Q
    ||||| |||| |||| |||||| | | ||||||||||||||||||||||||    
T  26136991 aaaatgtgataaaaagtacata-aaatttacgtaatgacaagatgtcatca 26137040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 336 - 459
Target Start/End: Original strand, 23225670 - 23225792
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | ||||||||||||| ||||| ||  |||||| ||| ||| ||||| |||||    
T  23225670 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttcctactctt-ttgctgcataagttgccttgtgaactc 23225768  T
Q  436 caaaatatgataaaactacatata 459  Q
    |||  | |||| ||| ||||||||    
T  23225769 caatttgtgatcaaaatacatata 23225792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 336 - 459
Target Start/End: Original strand, 23234823 - 23234945
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | ||||||||||||| ||||| ||  |||||| ||| ||| ||||| |||||    
T  23234823 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttcctactctt-ttgctgcataagttgccttgtgaactc 23234921  T
Q  436 caaaatatgataaaactacatata 459  Q
    |||  | |||| ||| ||||||||    
T  23234922 caatttgtgatcaaaatacatata 23234945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 336 - 459
Target Start/End: Original strand, 37166911 - 37167032
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | ||||||||| ||||||||| ||  |||||| ||| ||||||||| |||||    
T  37166911 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcag-ttttctactctt-ttgctgcataagttgtcttgtgaactc 37167008  T
Q  436 caaaatatgataaaactacatata 459  Q
    |||  | |||| ||| ||||||||    
T  37167009 caatttgtgatcaaaatacatata 37167032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 401
Target Start/End: Original strand, 22612271 - 22612336
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttct 401  Q
    |||||||||||||||||   |||||||||||||||||| |||||||||| |||| |||||||||||    
T  22612271 aaatcgtgtcacgtttttggcaaatcgtgacacgttttgcttctttgcattttcctcagtttttct 22612336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 439
Target Start/End: Complemental strand, 9405628 - 9405525
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    |||||||||||||||||  ||||||| |||||| |||| |||||||||| |||||| |||||||||| | ||  |||||| ||| | | ||||| |||||    
T  9405628 aaatcgtgtcacgttttttccaaatcatgacacattttgcttctttgcattttctttagtttttctattctttttgctgcataagtggccttgtgaactc 9405529  T
Q  436 caaa 439  Q
    ||||    
T  9405528 caaa 9405525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 486
Target Start/End: Complemental strand, 10468494 - 10468344
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| ||||||||   ||| ||||| |||||||||| ||||||||||||||||  | ||  |||||| ||| | | ||||| ||||     
T  10468494 aaatcgtgtcacgtttttaccaaatctcaacatgttttgcttctttgcattttcttcagtttttctgttctttttgctgcataagtggccttgtgaactt 10468395  T
Q  436 caaaatatgataaaactacatatacaattacgtaatgacaagatgtcatca 486  Q
    |||| | |||| |   |||| | | |||||||||||||| |||||||||||    
T  10468394 caaattgtgatcagtttacacagaaaattacgtaatgacgagatgtcatca 10468344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 398
Target Start/End: Original strand, 11951157 - 11951219
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    ||||||||||||||||| |||||||||||||||| ||| |||||||| | |||||||| ||||    
T  11951157 aaatcgtgtcacgtttttaccaaatcgtgacacgattttcttctttgtattttcttcaatttt 11951219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 28514683 - 28514611
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    ||||||||||||||| || |  |||||||||||| ||||||||||||||  |||||| ||||||||| |||||    
T  28514683 acttatattttcaaggcataatttctttttatgggttccttaaacaatgcccttagggcacttgttaacaaga 28514611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 25120019 - 25120086
Alignment:
Q  63 tattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    ||||||||||||| |  |||||||| |||||||||||||||||   |||||| |||||||||||||||    
T  25120019 tattttcaagacacaatttctttttgtggattccttaaacaatacccttagggcacttgttagcaaga 25120086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 29648585 - 29648641
Alignment:
Q  31 tgtagttatgatttttagaagagtgtaacttatattttcaagacaaacattcttttt 87  Q
    ||||||||||||||||| | | || ||||||||||||| |||||||| |||||||||    
T  29648585 tgtagttatgatttttacatgtgtttaacttatatttttaagacaaaaattcttttt 29648641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 31191417 - 31191346
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    ||||||||||||||| || |  |||||||||||| ||||||||||||||  |||||| ||||||||| |||||    
T  31191417 acttatattttcaaggcataatttctttttatgg-ttccttaaacaatgcccttagggcacttgttaacaaga 31191346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 10624991 - 10624912
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaagatcctaat 137  Q
    |||| ||||||||||||| |  |||||||| ||| ||| ||||||||||  ||||| |||||||||| ||||| ||||||    
T  10624991 acttgtattttcaagacataatttctttttgtgggttctttaaacaatgcccttagaacacttgttaacaagaccctaat 10624912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 29555823 - 29555858
Alignment:
Q  93 ttccttaaacaatgttcttaggacacttgttagcaa 128  Q
    |||||||||||||| |||||||||||||||||||||    
T  29555823 ttccttaaacaatgctcttaggacacttgttagcaa 29555858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 45618519 - 45618598
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaagatcctaat 137  Q
    |||||||||||||||||| |  ||| |||||||| |||||||||||||   |||||| |||||||||  |||| ||||||    
T  45618519 acttatattttcaagacataatttccttttatgggttccttaaacaatacccttagggcacttgttaataagaccctaat 45618598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 4861163 - 4861101
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    ||||||||||||||||| ||||||||||| |||  ||  |||||||| | |||||||||||||    
T  4861163 aaatcgtgtcacgtttttaccaaatcgtggcacaattctcttctttgtattttcttcagtttt 4861101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 24316304 - 24316238
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgtta 124  Q
    |||| ||||||||| |||||| |||||||| | ||||||| ||||||| |  |||||||||||||||    
T  24316304 acttgtattttcaaaacaaactttctttttgtagattcctcaaacaatatcattaggacacttgtta 24316238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 29414679 - 29414609
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaa 128  Q
    |||| |||||||||||||||  | | |||| ||| |||||||||||||||| ||||| || ||||||||||    
T  29414679 acttgtattttcaagacaaagttccattttgtggcttccttaaacaatgtttttagggcatttgttagcaa 29414609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 40199029 - 40199103
Alignment:
Q  56 taacttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    ||||||||||||||||| || |  |||||||||||||||| |||||||| || |||||  || |||||| |||||    
T  40199029 taacttatattttcaaggcataatttctttttatggattctttaaacaacgtccttagagcatttgttaacaaga 40199103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 48488491 - 48488569
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaagatcctaa 136  Q
    ||||||||||||||  || |  |||||||||||| ||||||||||||||  |||||  ||||| ||| |||||||||||    
T  48488491 acttatattttcaaagcataatttctttttatgggttccttaaacaatgcacttagagcacttattaacaagatcctaa 48488569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 377
Target Start/End: Original strand, 3068599 - 3068640
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttcctt 377  Q
    ||||||||||||||||| |  |||||||||||||||||||||    
T  3068599 aaatcgtgtcacgttttaagtaaatcgtgacacgttttcctt 3068640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 45662305 - 45662377
Alignment:
Q  58 acttatattttcaagacaaacattctttttatgg-attccttaaacaatgttcttaggacacttgttagcaaga 130  Q
    |||||||||||||| ||| |  |||||||||||| ||||||||||||||  ||||| ||||||||||| |||||    
T  45662305 acttatattttcaa-acataatttctttttatgggattccttaaacaatactcttaagacacttgttaacaaga 45662377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 372
Target Start/End: Original strand, 2761653 - 2761688
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttt 372  Q
    |||||||||||||||||| ||||||||||||||||||    
T  2761653 aaatcgtgtcacgttttc-ccaaatcgtgacacgttt 2761688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 372
Target Start/End: Original strand, 14070184 - 14070219
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttt 372  Q
    |||||||||||||||||| ||||||||||||||||||    
T  14070184 aaatcgtgtcacgttttc-ccaaatcgtgacacgttt 14070219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 372
Target Start/End: Original strand, 14380212 - 14380247
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttt 372  Q
    |||||||||||||||||| ||||||||||||||||||    
T  14380212 aaatcgtgtcacgttttc-ccaaatcgtgacacgttt 14380247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 336 - 487
Target Start/End: Original strand, 12691 - 12842
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagttttt-ctacttttcatgctgcttaaattgtcttgtaaact 434  Q
    ||||||||||| |||||   |||||||| |||||||||| ||||| | | |||||||||||||  || |||||| |||||||||| |||  |||||||||    
T  12691 aaatcgtgtcaagttttagacaaatcgttacacgttttc-ttcttagtattttcttcagttttaacttcttttcttgctgcttaagttgctttgtaaact 12789  T
Q  435 ccaaaatatgataaaactacatatacaattacgtaatgacaagatgtcatcaa 487  Q
    |||||||||||| ||| || ||||| ||||||||||||||  |||||||||||    
T  12790 ccaaaatatgatcaaaataaatataaaattacgtaatgacgtgatgtcatcaa 12842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 336 - 487
Target Start/End: Original strand, 59440 - 59592
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgt-aaact 434  Q
    ||||||||||||||||| |||||||||||||| ||||| |||||||||| ||||||||||||||||  | ||  |||||| ||| | | ||||| |||||    
T  59440 aaatcgtgtcacgtttttaccaaatcgtgacatgttttgcttctttgcattttcttcagtttttctgttctttttgctgcataagtggccttgtaaaact 59539  T
Q  435 ccaaaatatgataaaactacatatacaattacgtaatgacaagatgtcatcaa 487  Q
    ||||||| |||| |   |||| | | |||||||||||||| ||||||||||||    
T  59540 ccaaaatgtgatcagtttacacaaaaaattacgtaatgacgagatgtcatcaa 59592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 336 - 486
Target Start/End: Original strand, 3695 - 3847
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgtttt--ccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaac 433  Q
    ||||||||||||||||| ||||||||||||||||||||  | ||||||| | ||||||||| |||||| || ||  |||||| ||| ||| ||||| |||    
T  3695 aaatcgtgtcacgtttttaccaaatcgtgacacgtttttgctttctttgtattttcttcag-ttttctgctctttttgctgcataagttgccttgtgaac 3793  T
Q  434 tccaaaatatgataaaactacat-atacaattacgtaatgacaagatgtcatca 486  Q
    |||||| | |||| ||| ||||| | | |||||||||||||| |||||||||||    
T  3794 tccaaattgtgatcaaaatacataaaaaaattacgtaatgactagatgtcatca 3847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 337 - 486
Target Start/End: Complemental strand, 24184 - 24035
Alignment:
Q  337 aatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactcc 436  Q
    |||||||||||||||| |||||||||||||||| |||||||||||| | ||| |||| |||||||||| ||  |||||| ||| ||| ||||| ||||||    
T  24184 aatcgtgtcacgtttttaccaaatcgtgacacgatttccttctttgtattttattca-tttttctactctttttgctgcataagttgccttgtgaactcc 24086  T
Q  437 aaaatatgataaaactacatat-acaattacgtaatgacaagatgtcatca 486  Q
    |   | |||| ||| ||||||| | |||||||||||||  |||||||||||    
T  24085 actttgtgatcaaaatacatataaaaattacgtaatgaagagatgtcatca 24035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 337 - 486
Target Start/End: Complemental strand, 28422 - 28273
Alignment:
Q  337 aatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactcc 436  Q
    ||||||| |||||||||   ||||||||||||| ||| |||||||| | ||||| |||  ||||| |||||| |||||| ||| |||  |||| ||||||    
T  28422 aatcgtggcacgttttctagaaatcgtgacacgatttgcttctttgtattttctacagaatttctgcttttcttgctgcataagttgctttgtgaactcc 28323  T
Q  437 aaaatatgat-aaaactacatatacaattacgtaatgacaagatgtcatca 486  Q
    ||||| |||| |||| |||||| | ||||||||||||||||||||||||||    
T  28322 aaaatgtgataaaaagtacata-aaaattacgtaatgacaagatgtcatca 28273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1785 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold1785
Description:

Target: scaffold1785; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 336 - 484
Target Start/End: Complemental strand, 768 - 620
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||| |||||| |||| |||||||||| |||||||| |||||||  | ||  ||||||  || ||| ||||| |||||    
T  768 aaatcgtgtcacgtttttaccaaatcatgacacattttgcttctttgcattttcttcaatttttctgttctttttgctgcaaaagttgccttgtgaactc 669  T
Q  436 caaaatatgataaaactacatatacaattacgtaatgacaagatgtcat 484  Q
    |||||| |||| |   |||| | | |||||| |||||||||||||||||    
T  668 caaaatctgatcagtttacacagaaaattacataatgacaagatgtcat 620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 336 - 484
Target Start/End: Complemental strand, 63378 - 63230
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||| |||||| |||| |||||||||| |||||||| |||||||  | ||  ||||||  || ||| ||||| |||||    
T  63378 aaatcgtgtcacgtttttaccaaatcatgacacattttgcttctttgcattttcttcaatttttctgttctttttgctgcaaaagttgccttgtgaactc 63279  T
Q  436 caaaatatgataaaactacatatacaattacgtaatgacaagatgtcat 484  Q
    |||||| |||| |   |||| | | |||||| |||||||||||||||||    
T  63278 caaaatctgatcagtttacacagaaaattacataatgacaagatgtcat 63230  T

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Target: scaffold0056 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 398
Target Start/End: Original strand, 68284 - 68346
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||||||| | |||||||||||||    
T  68284 aaatcgtgtcatgtttttaccaaatcgtgacacgttttctttctttgtattttcttcagtttt 68346  T

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Target: scaffold0037 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 401
Target Start/End: Original strand, 95884 - 95948
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttct 401  Q
    ||||||||||||||||| |||||||| ||||| ||||| |||||||||| ||||||||||||||||    
T  95884 aaatcgtgtcacgtttttaccaaatcatgacatgttttgcttctttgca-tttcttcagtttttct 95948  T

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Target: scaffold0084 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 486
Target Start/End: Complemental strand, 18752 - 18602
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctacttttcatgctgcttaaattgtcttgtaaactc 435  Q
    ||||||||||||||||| |||||||| ||||||| ||  |||||||| | ||||||||||||  || || ||  |||||| ||| ||| ||||| |||||    
T  18752 aaatcgtgtcacgtttttaccaaatcatgacacgattctcttctttgtattttcttcagtttc-ctgctctttttgctgcctaagttgccttgtgaactc 18654  T
Q  436 caaaatatgataaaactacatatacaa-ttacgtaatgacaagatgtcatca 486  Q
    ||   | |||| ||| |||||||| || |||||||||||||||| |||||||    
T  18653 cattttgtgatcaaaatacatataaaaattacgtaatgacaagacgtcatca 18602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 18758 - 18696
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | |||||||||||||    
T  18758 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagtttt 18696  T

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Target: scaffold0038 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 30457 - 30395
Alignment:
Q  336 aaatcgtgtcacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttt 398  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| | |||||||||||||    
T  30457 aaatcgtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagtttt 30395  T

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Target: scaffold0265 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 3615 - 3685
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaa 128  Q
    |||| |||||||||||||||  ||||| || | |||| |||||||||||| ||||||| |||| |||||||    
T  3615 acttgtattttcaagacaaagtttcttcttgtagatttcttaaacaatgtccttaggagacttattagcaa 3685  T

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Target: scaffold0265; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 8504 - 8574
Alignment:
Q  58 acttatattttcaagacaaacattctttttatggattccttaaacaatgttcttaggacacttgttagcaa 128  Q
    |||| |||||||||||||||  ||||| || | |||| |||||||||||| ||||||| |||| |||||||    
T  8504 acttgtattttcaagacaaagtttcttcttgtagatttcttaaacaatgtccttaggagacttattagcaa 8574  T

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Target: scaffold0172 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 19448 - 19412
Alignment:
Q  89 tggattccttaaacaatgttcttaggacacttgttag 125  Q
    |||| |||||||||||||| |||||||||||||||||    
T  19448 tggaatccttaaacaatgtccttaggacacttgttag 19412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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