View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20046_low_5 (Length: 462)
Name: NF20046_low_5
Description: NF20046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20046_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 9 - 447
Target Start/End: Original strand, 40289779 - 40290217
Alignment:
| Q |
9 |
agcagagacttgaaagaatgtagaatgcattaatttgaattgtgtttgattatctttacttttttgtaaggaaagaggacaactaataataagtttttct |
108 |
Q |
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| T |
40289779 |
agcaaagacttgaaagaatgtagaatgcattaatttgaattgtgtttgattatctttacttttttgtaaggaaagaggacaactaataataagtttttct |
40289878 |
T |
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| Q |
109 |
gtttgttttttgtgtacatacacgttacatattctgttgcattcaaaatttcacgcttcttgtattatgcaattttaagttgcattctattttgtatata |
208 |
Q |
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| T |
40289879 |
gtttgttttttgtgtacatacacgttacatcttctgttgcattcaaaatttcacgcttcttgtattttgcaattttaagttgcattctattttgtatata |
40289978 |
T |
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| Q |
209 |
tcttttaccnnnnnnnnnnnnnnnctctgatcttccccctcacactcacacatgctttttggcttgtgtcagacacaatgatgaaatttgcttcgtttga |
308 |
Q |
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| T |
40289979 |
tcttttacctttttttttgtttttctctgctcttccccctcacactcacacatactttttggcttgtgtcagacacaatgatgaaatttgcttcgtttga |
40290078 |
T |
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| Q |
309 |
gactattgtggagatgatctacaaacacgccattccaacccccaaagatcaatgcagcaaaaataagcagcttggagtgagttttgcagcaggatatgtt |
408 |
Q |
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| T |
40290079 |
gactattgtggagatgatctacaaacacgccattccaacccccaaagatcaatgcagcaaaaataagcagcttggagtgagttttgcagcaggatatgtt |
40290178 |
T |
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| Q |
409 |
gcaggtgtactgtgtgcaattgtttcacaccctgctgat |
447 |
Q |
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| T |
40290179 |
gcaggtgtactgtgtgcaattgtttcacaccctgctgat |
40290217 |
T |
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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 341
Target Start/End: Original strand, 10600919 - 10600982
Alignment:
| Q |
278 |
cagacacaatgatgaaatttgcttcgtttgagactattgtggagatgatctacaaacacgccat |
341 |
Q |
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| T |
10600919 |
cagatacaatgatgaaatttgcttcgtatgaaaacattgttgagatgatctacaaacacgccat |
10600982 |
T |
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