View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20047_high_1 (Length: 741)

Name: NF20047_high_1
Description: NF20047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20047_high_1
NF20047_high_1
[»] chr7 (29 HSPs)
chr7 (424-730)||(38406232-38406538)
chr7 (252-377)||(24494997-24495122)
chr7 (316-389)||(14109005-14109078)
chr7 (316-389)||(14418962-14419035)
chr7 (424-538)||(14108855-14108972)
chr7 (424-538)||(14418812-14418929)
chr7 (309-389)||(38406120-38406199)
chr7 (309-389)||(46458647-46458727)
chr7 (326-389)||(4167570-4167633)
chr7 (252-355)||(44113474-44113577)
chr7 (424-514)||(4167666-4167756)
chr7 (659-728)||(4167960-4168029)
chr7 (450-514)||(40930645-40930708)
chr7 (316-353)||(4857310-4857347)
chr7 (326-389)||(10256242-10256305)
chr7 (277-380)||(13286937-13287040)
chr7 (257-352)||(49162287-49162382)
chr7 (309-379)||(26406227-26406297)
chr7 (252-293)||(24494030-24494071)
chr7 (251-328)||(30223971-30224048)
chr7 (251-328)||(36673831-36673908)
chr7 (251-328)||(43111473-43111549)
chr7 (309-377)||(25154882-25154950)
chr7 (316-355)||(131967-132006)
chr7 (322-389)||(40930533-40930600)
chr7 (321-383)||(18801329-18801391)
chr7 (321-383)||(19848774-19848836)
chr7 (309-355)||(27899182-27899228)
chr7 (251-324)||(41126283-41126356)
[»] chr8 (40 HSPs)
chr8 (252-377)||(44103242-44103367)
chr8 (251-377)||(21670108-21670234)
chr8 (251-388)||(13513464-13513601)
chr8 (251-388)||(13602997-13603134)
chr8 (255-377)||(21961871-21961993)
chr8 (249-366)||(39325791-39325908)
chr8 (251-389)||(10052148-10052286)
chr8 (251-330)||(13514858-13514937)
chr8 (251-330)||(13604391-13604470)
chr8 (309-389)||(7486179-7486259)
chr8 (309-383)||(117150-117224)
chr8 (424-514)||(7486292-7486381)
chr8 (424-514)||(41522532-41522622)
chr8 (262-383)||(13363518-13363639)
chr8 (309-383)||(39546617-39546691)
chr8 (249-330)||(39323829-39323910)
chr8 (309-389)||(13366984-13367064)
chr8 (307-381)||(37276185-37276259)
chr8 (309-382)||(21267234-21267307)
chr8 (316-389)||(44606248-44606321)
chr8 (309-377)||(36756166-36756234)
chr8 (424-517)||(36756279-36756373)
chr8 (309-389)||(35944010-35944090)
chr8 (309-377)||(36938783-36938851)
chr8 (262-330)||(44102004-44102072)
chr8 (425-480)||(117263-117318)
chr8 (316-383)||(12281720-12281787)
chr8 (432-514)||(10052327-10052408)
chr8 (659-728)||(41522285-41522354)
chr8 (309-389)||(19913594-19913674)
chr8 (309-389)||(36070280-36070360)
chr8 (424-491)||(13363412-13363479)
chr8 (321-389)||(2421227-2421295)
chr8 (251-295)||(13360397-13360441)
chr8 (309-389)||(20308707-20308787)
chr8 (309-389)||(21095340-21095420)
chr8 (316-388)||(39220788-39220860)
chr8 (309-355)||(16363780-16363826)
chr8 (316-377)||(37324634-37324695)
chr8 (326-379)||(41522632-41522685)
[»] chr1 (35 HSPs)
chr1 (246-377)||(51218912-51219043)
chr1 (251-389)||(44977265-44977403)
chr1 (316-389)||(9633884-9633957)
chr1 (246-383)||(30551529-30551666)
chr1 (246-383)||(37624510-37624647)
chr1 (310-382)||(52742917-52742989)
chr1 (246-388)||(27689321-27689464)
chr1 (246-383)||(22766760-22766897)
chr1 (246-383)||(23082066-23082203)
chr1 (316-383)||(49141436-49141503)
chr1 (424-514)||(52742787-52742877)
chr1 (251-355)||(9415668-9415772)
chr1 (251-330)||(51217662-51217741)
chr1 (299-381)||(50678455-50678537)
chr1 (319-389)||(51726778-51726848)
chr1 (309-378)||(26056092-26056161)
chr1 (643-695)||(47561234-47561285)
chr1 (424-491)||(27689502-27689569)
chr1 (424-491)||(30551423-30551490)
chr1 (309-383)||(14169721-14169795)
chr1 (316-377)||(14764338-14764399)
chr1 (316-389)||(21277103-21277176)
chr1 (251-328)||(48935105-48935182)
chr1 (309-389)||(8092700-8092780)
chr1 (432-487)||(23081964-23082019)
chr1 (257-332)||(34654331-34654406)
chr1 (424-491)||(37624404-37624471)
chr1 (251-333)||(35683099-35683181)
chr1 (251-288)||(37623294-37623331)
chr1 (316-388)||(19466140-19466212)
chr1 (277-328)||(25889487-25889538)
chr1 (433-512)||(44977421-44977499)
chr1 (432-474)||(22766670-22766712)
chr1 (251-328)||(2237973-2238050)
chr1 (251-328)||(35684198-35684274)
[»] chr3 (30 HSPs)
chr3 (251-377)||(7483471-7483597)
chr3 (252-377)||(17350048-17350173)
chr3 (251-377)||(39133061-39133187)
chr3 (262-377)||(31638173-31638290)
chr3 (309-383)||(19622107-19622181)
chr3 (424-517)||(8371435-8371527)
chr3 (309-383)||(34902934-34903008)
chr3 (309-383)||(47765540-47765614)
chr3 (309-389)||(53808420-53808500)
chr3 (309-379)||(11219532-11219602)
chr3 (300-381)||(32979181-32979262)
chr3 (424-517)||(53808533-53808626)
chr3 (247-329)||(26797359-26797441)
chr3 (424-514)||(47765654-47765744)
chr3 (251-383)||(8371264-8371396)
chr3 (309-389)||(23559921-23560001)
chr3 (251-330)||(17345355-17345433)
chr3 (321-363)||(24753462-24753504)
chr3 (251-333)||(32974213-32974295)
chr3 (251-328)||(32973183-32973260)
chr3 (251-328)||(53049032-53049109)
chr3 (309-389)||(12062318-12062398)
chr3 (251-383)||(25583158-25583289)
chr3 (251-295)||(34901696-34901740)
chr3 (424-491)||(34902828-34902895)
chr3 (251-333)||(5417038-5417120)
chr3 (251-333)||(48035314-48035396)
chr3 (251-333)||(53047941-53048023)
chr3 (453-514)||(32979332-32979392)
chr3 (251-328)||(52293518-52293595)
[»] scaffold0015 (1 HSPs)
scaffold0015 (255-377)||(207744-207866)
[»] chr2 (33 HSPs)
chr2 (252-377)||(26205058-26205183)
chr2 (247-377)||(14714532-14714662)
chr2 (251-377)||(4512150-4512276)
chr2 (424-517)||(21010306-21010399)
chr2 (326-389)||(7983629-7983692)
chr2 (309-389)||(29424546-29424626)
chr2 (246-376)||(41296401-41296531)
chr2 (309-381)||(12852988-12853060)
chr2 (257-347)||(8537062-8537152)
chr2 (254-304)||(37982738-37982788)
chr2 (318-376)||(45047453-45047511)
chr2 (659-728)||(7983267-7983336)
chr2 (300-389)||(37868974-37869062)
chr2 (309-389)||(14509311-14509391)
chr2 (310-381)||(3528207-3528278)
chr2 (318-389)||(25570804-25570875)
chr2 (299-389)||(21010432-21010522)
chr2 (316-389)||(10367348-10367421)
chr2 (252-328)||(2305585-2305661)
chr2 (254-330)||(4513746-4513822)
chr2 (326-377)||(3532313-3532364)
chr2 (463-514)||(7983516-7983567)
chr2 (316-389)||(12959639-12959712)
chr2 (290-379)||(15850603-15850692)
chr2 (309-353)||(7490165-7490209)
chr2 (309-389)||(23177776-23177856)
chr2 (309-389)||(23589033-23589113)
chr2 (424-476)||(29424462-29424513)
chr2 (309-376)||(28109816-28109883)
chr2 (251-330)||(41295149-41295228)
chr2 (436-515)||(45047621-45047699)
chr2 (251-333)||(2306651-2306733)
chr2 (309-382)||(4829567-4829640)
[»] chr4 (33 HSPs)
chr4 (246-377)||(2293471-2293602)
chr4 (251-377)||(36604787-36604913)
chr4 (424-514)||(11094739-11094829)
chr4 (309-374)||(86905-86970)
chr4 (249-389)||(39592223-39592363)
chr4 (309-389)||(35787898-35787978)
chr4 (424-511)||(39592104-39592190)
chr4 (251-389)||(47668531-47668669)
chr4 (424-538)||(52980199-52980315)
chr4 (251-330)||(2292194-2292273)
chr4 (424-514)||(29687788-29687879)
chr4 (251-389)||(6616145-6616283)
chr4 (1-50)||(2293773-2293822)
chr4 (281-389)||(29687912-29688020)
chr4 (251-330)||(36604484-36604563)
chr4 (251-373)||(43894149-43894271)
chr4 (309-389)||(11094628-11094706)
chr4 (309-389)||(6140294-6140374)
chr4 (251-293)||(18358403-18358445)
chr4 (300-381)||(44302813-44302894)
chr4 (432-514)||(35788019-35788100)
chr4 (272-388)||(17494192-17494308)
chr4 (321-389)||(50530617-50530685)
chr4 (309-355)||(17319144-17319190)
chr4 (424-514)||(47668415-47668505)
chr4 (251-328)||(526714-526791)
chr4 (252-293)||(38371835-38371876)
chr4 (316-377)||(38418963-38419024)
chr4 (251-379)||(43419319-43419447)
chr4 (251-293)||(96711-96753)
chr4 (325-383)||(26393067-26393125)
chr4 (265-303)||(44160431-44160469)
chr4 (316-389)||(11114914-11114987)
[»] chr6 (11 HSPs)
chr6 (256-389)||(18139421-18139554)
chr6 (424-514)||(33801828-33801918)
chr6 (307-389)||(33801951-33802033)
chr6 (309-389)||(14328708-14328788)
chr6 (309-389)||(14421718-14421798)
chr6 (316-373)||(13507121-13507178)
chr6 (309-389)||(293574-293654)
chr6 (251-330)||(18773698-18773777)
chr6 (424-474)||(18139337-18139387)
chr6 (251-333)||(19367761-19367843)
chr6 (309-355)||(31738465-31738511)
[»] scaffold0025 (2 HSPs)
scaffold0025 (451-514)||(56509-56572)
scaffold0025 (322-389)||(56634-56701)
[»] scaffold0084 (2 HSPs)
scaffold0084 (251-377)||(13150-13276)
scaffold0084 (249-330)||(11748-11829)
[»] scaffold0098 (1 HSPs)
scaffold0098 (316-377)||(41017-41078)
[»] chr5 (17 HSPs)
chr5 (326-389)||(7426760-7426823)
chr5 (251-378)||(21387681-21387808)
chr5 (309-389)||(40058120-40058200)
chr5 (424-514)||(7426856-7426946)
chr5 (299-381)||(18693790-18693872)
chr5 (316-389)||(5383051-5383124)
chr5 (251-355)||(41906366-41906470)
chr5 (251-330)||(41905219-41905298)
chr5 (316-389)||(2167449-2167522)
chr5 (251-303)||(12829614-12829666)
chr5 (251-303)||(12861593-12861645)
chr5 (251-324)||(15509239-15509312)
chr5 (252-328)||(15510258-15510334)
chr5 (309-389)||(19525222-19525302)
chr5 (251-333)||(4567964-4568046)
chr5 (251-333)||(14210187-14210269)
chr5 (252-333)||(19825919-19826000)
[»] scaffold0051 (1 HSPs)
scaffold0051 (300-381)||(39843-39924)
[»] scaffold0045 (1 HSPs)
scaffold0045 (309-383)||(77119-77195)
[»] scaffold0122 (1 HSPs)
scaffold0122 (316-389)||(16054-16127)
[»] scaffold0002 (1 HSPs)
scaffold0002 (251-328)||(458455-458532)
[»] scaffold1974 (1 HSPs)
scaffold1974 (309-389)||(562-642)
[»] scaffold1878 (1 HSPs)
scaffold1878 (309-389)||(632-712)
[»] scaffold0290 (1 HSPs)
scaffold0290 (309-389)||(9412-9492)
[»] scaffold0046 (1 HSPs)
scaffold0046 (277-330)||(24808-24861)
[»] scaffold0177 (1 HSPs)
scaffold0177 (251-328)||(1799-1876)


Alignment Details
Target: chr7 (Bit Score: 181; Significance: 2e-97; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 424 - 730
Target Start/End: Original strand, 38406232 - 38406538
Alignment:
Q  424 aaaagagaattgttggatcatttaaggtctattgtattttattgtaaaccaccaacaccaaatattttcctcacctttcttcatcttcttcatcttcatg 523  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  38406232 aaaagaggattgttggatcatttaaagtctattgtattttattgtaaaccatccacaccaaatattttcctcacctttcttcatcttcttcatcttcatg 38406331  T
Q  524 gacataattattcctnnnnnnnnnnnnnctttcagaaccataatctcaaaataataaaacacaaattcatttaactcacaatcatctttaaaccnnnnnn 623  Q
    |||||||||||||||             ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  38406332 gacataattattcctaaaaagaaaaaaacttccagaaccataatctcaaaataataaaacacaaattcatttaactcacaatcatctttaaaccaaaaaa 38406431  T
Q  624 nnnnnnnnnnnnnnncactaattcattttttaataaatttcatccatgaatattgttctccttcatccatttaaatgatcaaaacacaaacataaaccat 723  Q
                   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  38406432 ataaaaaataaaaaacactaattcattttttaataaatttcatccatgaatattgttctccttcatccattttaatgatcaaaacacaaacataaaccat 38406531  T
Q  724 atatatt 730  Q
    |||||||    
T  38406532 atatatt 38406538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 252 - 377
Target Start/End: Complemental strand, 24495122 - 24494997
Alignment:
Q  252 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtga 351  Q
    |||| |||||||||||| ||| ||||||||||||||||||||||||||||||||   |||||| ||||||||||||||||||||||||||||||| ||||    
T  24495122 tcccttaactaaaaaacctctcaaattggtcccttatgtcttcttctgttacctcgtttggtcctctccgttagtttttaacatcaaatgtctaaagtga 24495023  T
Q  352 accatgtttaaaggtagtccaccata 377  Q
    ||||| |||||| || ||||||||||    
T  24495022 accatatttaaaagtggtccaccata 24494997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 316 - 389
Target Start/End: Complemental strand, 14109078 - 14109005
Alignment:
Q  316 tctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  14109078 tctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagaccttattaaa 14109005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 316 - 389
Target Start/End: Complemental strand, 14419035 - 14418962
Alignment:
Q  316 tctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  14419035 tctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagaccttattaaa 14418962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 424 - 538
Target Start/End: Complemental strand, 14108972 - 14108855
Alignment:
Q  424 aaaagagaattgttggatcatttaaggtctattgtattttattgtaaaccaccaacaccaaatattttcctcacctttcttca---tcttcttcatcttc 520  Q
    ||||||| ||||||||||||| || | |||||| ||||||||||||||| |||||||| ||||||||| ||||||||||||||   ||||||| ||||||    
T  14108972 aaaagaggattgttggatcatgtaggatctattatattttattgtaaacaaccaacactaaatatttttctcacctttcttcattttcttcttaatcttc 14108873  T
Q  521 atggacataattattcct 538  Q
    ||  ||||||| ||||||    
T  14108872 atcaacataatcattcct 14108855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 424 - 538
Target Start/End: Complemental strand, 14418929 - 14418812
Alignment:
Q  424 aaaagagaattgttggatcatttaaggtctattgtattttattgtaaaccaccaacaccaaatattttcctcacctttcttca---tcttcttcatcttc 520  Q
    ||||||| ||||||||||||| || | |||||| ||||||||||||||| |||||||| ||||||||| ||||||||||||||   ||||||| ||||||    
T  14418929 aaaagaggattgttggatcatgtaggatctattatattttattgtaaacaaccaacactaaatatttttctcacctttcttcattttcttcttaatcttc 14418830  T
Q  521 atggacataattattcct 538  Q
    ||  ||||||| ||||||    
T  14418829 atcaacataatcattcct 14418812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 309 - 389
Target Start/End: Original strand, 38406120 - 38406199
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| | ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||    
T  38406120 ttggtcctttccgttaatttttaacatcaaatgtctaaggtgaaccatatttaaaggtagtcca-catagaccttattaaa 38406199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 309 - 389
Target Start/End: Complemental strand, 46458727 - 46458647
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| |||||||| ||||||||| | |||||||||||||||||||  |||| ||||||||||||||||||||| |||||    
T  46458727 ttggtcctctccgtttgtttttaaccttaaatgtctaaggtgaaccaactttataggtagtccaccatagaccttattaaa 46458647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 326 - 389
Target Start/End: Original strand, 4167570 - 4167633
Alignment:
Q  326 tttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||| |||||    
T  4167570 tttttaacatcaaatttctaaggtgaaccatgtttaaaggtggtccaccatagatcttattaaa 4167633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 252 - 355
Target Start/End: Original strand, 44113474 - 44113577
Alignment:
Q  252 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtga 351  Q
    |||| |||||||||||||||| ||||||||||||||||| |||| | ||||||| | ||||||  || ||||||||||||||   |||| ||||||||||    
T  44113474 tcccttaactaaaaaacgtctcaaattggtcccttatgtattctgccgttacctattttggtccacttcgttagtttttaaccataaatatctaaggtga 44113573  T
Q  352 acca 355  Q
    ||||    
T  44113574 acca 44113577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 424 - 514
Target Start/End: Original strand, 4167666 - 4167756
Alignment:
Q  424 aaaagagaattgttggatcatttaaggtctattgtattttattgtaaaccaccaacaccaaatattttcctcacctttcttcatcttcttc 514  Q
    |||||||  ||||||||| || || ||||| |||||||||||||||||||||| ||||| |||||||| |||||||||||| ||| |||||    
T  4167666 aaaagaggtttgttggatgatgtagggtctgttgtattttattgtaaaccaccgacacctaatatttttctcacctttctttatcatcttc 4167756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 659 - 728
Target Start/End: Original strand, 4167960 - 4168029
Alignment:
Q  659 aatttcatccatgaatattgttctccttcatccatttaaatgatcaaaacacaaacataaaccatatata 728  Q
    ||||||||||||||||||||| ||||||||||  ||| ||| |||||||||||||| |||||||| ||||    
T  4167960 aatttcatccatgaatattgtcctccttcatcatttttaataatcaaaacacaaacttaaaccatgtata 4168029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 450 - 514
Target Start/End: Original strand, 40930645 - 40930708
Alignment:
Q  450 gtctattgtattttattgtaaaccaccaacaccaaatattttcctcacctttcttcatcttcttc 514  Q
    ||||||||||||||||| ||||||||||||| |  ||||||| ||||||||||||||||||||||    
T  40930645 gtctattgtattttattataaaccaccaaca-cttatatttttctcacctttcttcatcttcttc 40930708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 4857310 - 4857347
Alignment:
Q  316 tctccgttagtttttaacatcaaatgtctaaggtgaac 353  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4857310 tctccgttagtttttaacatcaaatgtctaaggtgaac 4857347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 326 - 389
Target Start/End: Original strand, 10256242 - 10256305
Alignment:
Q  326 tttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||||| | ||| |||||||||||||||  |||| ||||||||||||||||||||| |||||    
T  10256242 tttttaaccttaaaagtctaaggtgaaccaactttataggtagtccaccatagaccttattaaa 10256305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 277 - 380
Target Start/End: Complemental strand, 13287040 - 13286937
Alignment:
Q  277 ttggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccat 376  Q
    ||||||||||||||||| | |||||  || | |||||| ||| |||||||||||||| | ||||||||||| |||| ||   ||||| ||| ||||||||    
T  13287040 ttggtcccttatgtcttatgctgtttactattttggtcctcttcgttagtttttaaccttaaatgtctaagatgaaacaacattaaaagtattccaccat 13286941  T
Q  377 agac 380  Q
    ||||    
T  13286940 agac 13286937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 257 - 352
Target Start/End: Original strand, 49162287 - 49162382
Alignment:
Q  257 taactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtgaa 352  Q
    |||||||||||||| | ||||||||||||||||| |||| | ||| ||| | ||||||  || |||||||||||||| | |||| |||||| ||||    
T  49162287 taactaaaaaacgtttaaaattggtcccttatgtattctgccgtttcctattttggtccacttcgttagtttttaaccttaaatatctaagatgaa 49162382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 309 - 379
Target Start/End: Original strand, 26406227 - 26406297
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccataga 379  Q
    |||||| ||||||||| |||||||| | |||||||||||||||||||  |||  |||| ||||||||||||    
T  26406227 ttggtcatctccgttattttttaaccttaaatgtctaaggtgaaccaactttgtaggtggtccaccataga 26406297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 252 - 293
Target Start/End: Original strand, 24494030 - 24494071
Alignment:
Q  252 tcccctaactaaaaaacgtcttaaattggtcccttatgtctt 293  Q
    |||||||||||||||| |||| ||||||||||||||||||||    
T  24494030 tcccctaactaaaaaatgtctcaaattggtcccttatgtctt 24494071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 30224048 - 30223971
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagttt 328  Q
    |||||||||||| |||  |||| || ||||||||||||||||||| | ||||| | | |||||| |||||||||||||    
T  30224048 gtcccctaactataaattgtctcaatttggtcccttatgtcttctgccgttacatcttttggtcctctccgttagttt 30223971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 36673908 - 36673831
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagttt 328  Q
    |||||||||||| |||| |||| || |||||||||||||||||||   ||||||| | |||||| |||| ||||||||    
T  36673908 gtcccctaactataaaatgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctcagttagttt 36673831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 43111473 - 43111549
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagttt 328  Q
    |||||||||||||||||||||| |||||| || |||||||||| |   ||||||||| || ||| |||||||||||||    
T  43111473 gtcccctaactaaaaaacgtctcaaattgatcacttatgtcttttgtcgttaccttt-tttgtcatctccgttagttt 43111549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 309 - 377
Target Start/End: Complemental strand, 25154950 - 25154882
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccata 377  Q
    |||||| |||||||| ||||||||| | |||||||||||||||||||  |||| | || ||||||||||    
T  25154950 ttggtcatctccgtttgtttttaaccttaaatgtctaaggtgaaccaactttataagtggtccaccata 25154882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 316 - 355
Target Start/End: Complemental strand, 132006 - 131967
Alignment:
Q  316 tctccgttagtttttaacatcaaatgtctaaggtgaacca 355  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  132006 tctccgttagtttttaaccttaaatgtctaaggtgaacca 131967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 322 - 389
Target Start/End: Original strand, 40930533 - 40930600
Alignment:
Q  322 ttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    ||||||||||||||||||| ||||||||| |||||| || |||||  ||| ||||| ||||| |||||    
T  40930533 ttagtttttaacatcaaatatctaaggtggaccatgattcaaggtgatcccccatataccttattaaa 40930600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 321 - 383
Target Start/End: Original strand, 18801329 - 18801391
Alignment:
Q  321 gttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagacctt 383  Q
    |||| ||||||||| ||||| ||||||||||||||| ||| |||||  |||||||| ||||||    
T  18801329 gttaatttttaacagcaaatctctaaggtgaaccatatttcaaggtgatccaccatggacctt 18801391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 321 - 383
Target Start/End: Complemental strand, 19848836 - 19848774
Alignment:
Q  321 gttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagacctt 383  Q
    |||| ||||||||| ||||| ||||||||||||||| ||| |||||  |||||||| ||||||    
T  19848836 gttaatttttaacagcaaatctctaaggtgaaccatatttcaaggtgatccaccatggacctt 19848774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 27899228 - 27899182
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaacca 355  Q
    |||||||| |||||||||||||||| | |||| ||||||||||||||    
T  27899228 ttggtcttatccgttagtttttaaccttaaatatctaaggtgaacca 27899182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 251 - 324
Target Start/End: Original strand, 41126283 - 41126356
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgtta 324  Q
    |||||||||||| |||  |||| || |||||||||||||||||||   ||||||| | |||||| |||||||||    
T  41126283 gtcccctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgtta 41126356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 2e-45; HSPs: 40)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 252 - 377
Target Start/End: Complemental strand, 44103367 - 44103242
Alignment:
Q  252 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtga 351  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||| ||| ||| | |||||| ||||||||||||||||||||||||||||||||||||    
T  44103367 tcccctaactaaaaaacgtctcaaattggtctcttatgtcttcttccgtttcctcttttggtcctctccgttagtttttaacatcaaatgtctaaggtga 44103268  T
Q  352 accatgtttaaaggtagtccaccata 377  Q
    ||||||||||||||| ||||||||||    
T  44103267 accatgtttaaaggtggtccaccata 44103242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 251 - 377
Target Start/End: Original strand, 21670108 - 21670234
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtg 350  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||| |||||||||    
T  21670108 gtcccctaactaaaaaacgtctcaaattggtcccttatgtcttcttccgttacctcttttggtcttctccgttagtttttaacatcaaatatctaaggtg 21670207  T
Q  351 aaccatgtttaaaggtagtccaccata 377  Q
    |||||| || ||| || ||||||||||    
T  21670208 aaccatattaaaaagtggtccaccata 21670234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 251 - 388
Target Start/End: Original strand, 13513464 - 13513601
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtg 350  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| |||||||||| |||||||||||||||| |||| ||    
T  13513464 gtcccctaactaaaaaacgtctcaaattggtcccttatgtcttcttctgttacctcttttggtcctctccgttagcttttaacatcaaatgtataagatg 13513563  T
Q  351 aaccatgtttaaaggtagtccaccatagaccttgttaa 388  Q
    |||||| |||||| || |||||||||| ||||| ||||    
T  13513564 aaccatatttaaaagtggtccaccatataccttattaa 13513601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 251 - 388
Target Start/End: Original strand, 13602997 - 13603134
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtg 350  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| |||||||||| |||||||||||||||| |||| ||    
T  13602997 gtcccctaactaaaaaacgtctcaaattggtcccttatgtcttcttctgttacctcttttggtcctctccgttagcttttaacatcaaatgtataagatg 13603096  T
Q  351 aaccatgtttaaaggtagtccaccatagaccttgttaa 388  Q
    |||||| |||||| || |||||||||| ||||| ||||    
T  13603097 aaccatatttaaaagtggtccaccatataccttattaa 13603134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 255 - 377
Target Start/End: Original strand, 21961871 - 21961993
Alignment:
Q  255 cctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtgaacc 354  Q
    ||||| |||||||||||| |||||| ||||||||||||||||| |||| || | |||||| ||||||||||||||||||||||||||||| |||||||||    
T  21961871 cctaattaaaaaacgtctcaaattgatcccttatgtcttcttccgttatctcttttggtcctctccgttagtttttaacatcaaatgtcttaggtgaacc 21961970  T
Q  355 atgtttaaaggtagtccaccata 377  Q
    |||||||||||| ||||||||||    
T  21961971 atgtttaaaggtggtccaccata 21961993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 249 - 366
Target Start/End: Complemental strand, 39325908 - 39325791
Alignment:
Q  249 tagtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaagg 348  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||| | || ||| |||| | ||||||||||||||||||||||||||    
T  39325908 tagtcccctaactaaaaaacgttttaaattggtcccttatgttttcttccgttacctcttttagtcatctctgctagtttttaacatcaaatgtctaagg 39325809  T
Q  349 tgaaccatgtttaaaggt 366  Q
    ||||| ||||||||||||    
T  39325808 tgaactatgtttaaaggt 39325791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 251 - 389
Target Start/End: Original strand, 10052148 - 10052286
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtg 350  Q
    ||||||||| || |||  |||| |||||||||||||||||| ||| | ||||||| | |||||| ||||| |||||||||||||| ||||||||||| ||    
T  10052148 gtcccctaattataaagtgtctcaaattggtcccttatgtcatctgccgttacctcttttggtcatctcctttagtttttaacattaaatgtctaagatg 10052247  T
Q  351 aaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| ||||||||| |||||||||| ||||| |||||    
T  10052248 aaccatatttaaaggtggtccaccataaaccttattaaa 10052286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 251 - 330
Target Start/End: Complemental strand, 13514937 - 13514858
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagttttt 330  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| |||||||||||||||    
T  13514937 gtcccctaactaaaaaacgtctcaaattggtcccttatgtcttcttctgttacctcttttggtcatctccgttagttttt 13514858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 251 - 330
Target Start/End: Complemental strand, 13604470 - 13604391
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagttttt 330  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| |||||||||||||||    
T  13604470 gtcccctaactaaaaaacgtctcaaattggtcccttatgtcttcttctgttacctcttttggtcatctccgttagttttt 13604391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 309 - 389
Target Start/End: Original strand, 7486179 - 7486259
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||| |||||    
T  7486179 ttggtcctctccgttagtttttaacatcaaatgtctaaagtgaaccatgtttaaatgttgtccaccatagaccttattaaa 7486259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 309 - 383
Target Start/End: Original strand, 117150 - 117224
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagacctt 383  Q
    |||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||    
T  117150 ttggtcctctccgttagtttttaacatcaaatgtctaaggtgagtcatgtttaaaggtggtccaccatagacctt 117224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 424 - 514
Target Start/End: Original strand, 7486292 - 7486381
Alignment:
Q  424 aaaagagaattgttggatcatttaaggtctattgtattttattgtaaaccaccaacaccaaatattttcctcacctttcttcatcttcttc 514  Q
    ||||||| |||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||    
T  7486292 aaaagaggattgttagatcatataagatctattgtattttattgtaaaccaccaacacctaatatttttctcacc-ttcttcatcttcttc 7486381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 424 - 514
Target Start/End: Complemental strand, 41522622 - 41522532
Alignment:
Q  424 aaaagagaattgttggatcatttaaggtctattgtattttattgtaaaccaccaacaccaaatattttcctcacctttcttcatcttcttc 514  Q
    |||||||| ||||||||| || || |||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||| |||||    
T  41522622 aaaagagatttgttggatgatgtagggtctattgtattttattgtaaaccaccaacacctaatatttttctcacctttctttatcatcttc 41522532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 262 - 383
Target Start/End: Complemental strand, 13363639 - 13363518
Alignment:
Q  262 aaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgttta 361  Q
    ||||||||| | || |||||||||||||| ||||   ||||||| | |||||| ||||||||||||||||||| ||||||||||| ||||||||| ||||    
T  13363639 aaaaaacgtttcaatttggtcccttatgttttctgtggttacctcttttggtcctctccgttagtttttaacaccaaatgtctaaagtgaaccatattta 13363540  T
Q  362 aaggtagtccaccatagacctt 383  Q
    ||||| || |||||| ||||||    
T  13363539 aaggtggtgcaccatggacctt 13363518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 309 - 383
Target Start/End: Complemental strand, 39546691 - 39546617
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagacctt 383  Q
    |||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||| ||||||    
T  39546691 ttggtcatctccgttagtttttaacatcaaatgtttaagatgaaccatgtttaaaggtggtccaccatggacctt 39546617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 249 - 330
Target Start/End: Original strand, 39323829 - 39323910
Alignment:
Q  249 tagtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagttttt 330  Q
    ||||| |||||||||||||||||| |||||| || |||||||||||||| ||||||| | |||||| |||||||||||||||    
T  39323829 tagtctcctaactaaaaaacgtctcaaattgatctcttatgtcttcttccgttacctcttttggtcctctccgttagttttt 39323910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 309 - 389
Target Start/End: Complemental strand, 13367064 - 13366984
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| |||||||||||||||||| | |||||||||||||||||||  |||| |||| |||||||||||||||| |||||    
T  13367064 ttggtcctctccgttagtttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaaa 13366984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 37276259 - 37276185
Alignment:
Q  307 tattggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagacc 381  Q
    |||||||| |||| ||||||||||||||||||| |||||||||||||||| ||||||||| || ||| |||||||    
T  37276259 tattggtcctctctgttagtttttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcactatagacc 37276185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 309 - 382
Target Start/End: Original strand, 21267234 - 21267307
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagacct 382  Q
    |||||| ||||||||||||||||||||||||| ||||||||| |||||| || ||||| |||||||||| ||||    
T  21267234 ttggtcctctccgttagtttttaacatcaaatatctaaggtggaccatgattcaaggtggtccaccatatacct 21267307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 316 - 389
Target Start/End: Original strand, 44606248 - 44606321
Alignment:
Q  316 tctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    ||||| |||||||||||| | |||||||||||||||||||  |||| |||| ||||||||||||||||||||||    
T  44606248 tctccattagtttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttgttaaa 44606321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 309 - 377
Target Start/End: Original strand, 36756166 - 36756234
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccata 377  Q
    |||||| ||||||||||||||||||||||||| ||||||||||| ||| ||||||||| || |||||||    
T  36756166 ttggtcatctccgttagtttttaacatcaaatttctaaggtgaatcatatttaaaggtggttcaccata 36756234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 424 - 517
Target Start/End: Original strand, 36756279 - 36756373
Alignment:
Q  424 aaaagagaattgttggatcatttaaggtcta-ttgtattttattgtaaaccaccaacaccaaatattttcctcacctttcttcatcttcttcatc 517  Q
    |||||||||| |||||||||| || |||||| |||||||||| ||| |||||| |||||| |||||||| |  || |||||||||||||||||||    
T  36756279 aaaagagaatcgttggatcatgtagggtctaattgtattttactgtgaaccactaacacctaatatttttcatacatttcttcatcttcttcatc 36756373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 309 - 389
Target Start/End: Original strand, 35944010 - 35944090
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| |||||||||||||||||| | |||||||||||||||||||  |||| ||||  ||||||||||| ||| |||||    
T  35944010 ttggtcatctccgttagtttttaactttaaatgtctaaggtgaaccaactttataggtgatccaccatagatcttattaaa 35944090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 309 - 377
Target Start/End: Original strand, 36938783 - 36938851
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccata 377  Q
    ||||||||||| |||| ||||||||||||||| ||||| ||||||||| ||||||||| || |||||||    
T  36938783 ttggtcttctctgttaatttttaacatcaaatatctaaagtgaaccatatttaaaggtggttcaccata 36938851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 44102004 - 44102072
Alignment:
Q  262 aaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagttttt 330  Q
    ||||||||||| ||||||||| |||||||||||||| ||||||| | |||||| |||| ||||||||||    
T  44102004 aaaaaacgtctcaaattggtctcttatgtcttcttccgttacctcttttggtcctctctgttagttttt 44102072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 425 - 480
Target Start/End: Original strand, 117263 - 117318
Alignment:
Q  425 aaagagaattgttggatcatttaaggtctattgtattttattgtaaaccaccaaca 480  Q
    |||||| ||||||||||||| || | ||||||||||||||||||||||||||||||    
T  117263 aaagaggattgttggatcatataggatctattgtattttattgtaaaccaccaaca 117318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 316 - 383
Target Start/End: Complemental strand, 12281787 - 12281720
Alignment:
Q  316 tctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagacctt 383  Q
    ||||||||||||||||||||||||| ||||| ||| |||||| || ||||| |||||||||| |||||    
T  12281787 tctccgttagtttttaacatcaaatatctaatgtggaccatgattcaaggtggtccaccatatacctt 12281720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 432 - 514
Target Start/End: Original strand, 10052327 - 10052408
Alignment:
Q  432 attgttggatcatttaaggtctattgtattttattgtaaaccaccaacaccaaatattttcctcacctttcttcatcttcttc 514  Q
    ||||||||||||| || |||||||||||||||| ||| |||||| | |||| ||| |||| ||||| ||||||||||||||||    
T  10052327 attgttggatcatgtagggtctattgtattttactgtgaaccactaccacctaat-tttttctcacttttcttcatcttcttc 10052408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 659 - 728
Target Start/End: Complemental strand, 41522354 - 41522285
Alignment:
Q  659 aatttcatccatgaatattgttctccttcatccatttaaatgatcaaaacacaaacataaaccatatata 728  Q
    |||||||||||||||||||||  |||||||||  ||| ||| |||||||||||||| |||||||| ||||    
T  41522354 aatttcatccatgaatattgtcatccttcatcatttttaataatcaaaacacaaacttaaaccatgtata 41522285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 309 - 389
Target Start/End: Original strand, 19913594 - 19913674
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| |||||||||||||||||| | |||| ||||||||||||||  |||| || | ||||||||||||| || |||||    
T  19913594 ttggtcctctccgttagtttttaaccttaaatttctaaggtgaaccaactttatagatggtccaccatagactttattaaa 19913674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 309 - 389
Target Start/End: Original strand, 36070280 - 36070360
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| || |||||||| ||| || | |||||||||||||||||||  |||| |||| |||||||||||||||| |||||    
T  36070280 ttggtcctccccgttagtctttgaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaaa 36070360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 424 - 491
Target Start/End: Complemental strand, 13363479 - 13363412
Alignment:
Q  424 aaaagagaattgttggatcatttaaggtctattgtattttattgtaaaccaccaacaccaaatatttt 491  Q
    ||||||| ||||||||||||| || |||||||||||||||  ||| |||||| |||||| ||||||||    
T  13363479 aaaagaggattgttggatcatgtagggtctattgtatttttgtgtgaaccactaacacctaatatttt 13363412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 321 - 389
Target Start/End: Complemental strand, 2421295 - 2421227
Alignment:
Q  321 gttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    ||||||||||||| | |||||||||||||||||||  |||| || | ||||| |||||||||| |||||    
T  2421295 gttagtttttaaccttaaatgtctaaggtgaaccaactttatagatggtccatcatagaccttattaaa 2421227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 13360397 - 13360441
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttct 295  Q
    ||||||||| |||||||||||| ||||||||||||||||| ||||    
T  13360397 gtcccctaattaaaaaacgtctcaaattggtcccttatgtattct 13360441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 309 - 389
Target Start/End: Original strand, 20308707 - 20308787
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| | ||| ||| |||||||| | |||||||||||||||||||  |||| || |||||| ||||||||||| |||||    
T  20308707 ttggtcatttccattaatttttaaccttaaatgtctaaggtgaaccaactttatagatagtccgccatagaccttattaaa 20308787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 309 - 389
Target Start/End: Original strand, 21095340 - 21095420
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| | ||| ||| |||||||| | |||||||||||||||||||  |||| || |||||| ||||||||||| |||||    
T  21095340 ttggtcatttccattaatttttaaccttaaatgtctaaggtgaaccaactttatagatagtccgccatagaccttattaaa 21095420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 316 - 388
Target Start/End: Original strand, 39220788 - 39220860
Alignment:
Q  316 tctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaa 388  Q
    |||| ||||||||||||| | |||||||||||||||| ||   ||||| |||||| |||||||||||| ||||    
T  39220788 tctctgttagtttttaaccttaaatgtctaaggtgaaacaatattaaaagtagtctaccatagaccttattaa 39220860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 16363826 - 16363780
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaacca 355  Q
    |||||| |||||||||||| ||||| | |||||||||||||||||||    
T  16363826 ttggtcctctccgttagttattaactttaaatgtctaaggtgaacca 16363780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 377
Target Start/End: Complemental strand, 37324695 - 37324634
Alignment:
Q  316 tctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccata 377  Q
    ||||||||| ||||| || | |||||||||||||||||||  |||| |||| ||||||||||    
T  37324695 tctccgttaatttttcactttaaatgtctaaggtgaaccaactttataggtggtccaccata 37324634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 379
Target Start/End: Complemental strand, 41522685 - 41522632
Alignment:
Q  326 tttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccataga 379  Q
    ||||||||||||||| | |||| ||||||||||||||| || ||||| ||||||    
T  41522685 tttttaacatcaaatatttaagatgaaccatgtttaaaagtggtccagcataga 41522632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 6e-42; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 246 - 377
Target Start/End: Complemental strand, 51219043 - 51218912
Alignment:
Q  246 aaatagtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtcta 345  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||| |||| ||  ||||||| ||||||||||||||||||||||||||||||    
T  51219043 aaatggtcccctaactaaaaaacgtctcaaattggtcccttatgtcttcttccgttaactcaattggtcctctccgttagtttttaacatcaaatgtcta 51218944  T
Q  346 aggtgaaccatgtttaaaggtagtccaccata 377  Q
    | ||||||||| ||||||| | ||||||||||    
T  51218943 aagtgaaccatatttaaagatggtccaccata 51218912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 251 - 389
Target Start/End: Original strand, 44977265 - 44977403
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtg 350  Q
    |||||||||||| |||  |||||||| |||||||||||||||||| | |||||||   |||||| |||| ||||||||||||||||||||||||||||||    
T  44977265 gtcccctaactataaagtgtcttaaactggtcccttatgtcttctgccgttacctcatttggtcatctctgttagtttttaacatcaaatgtctaaggtg 44977364  T
Q  351 aaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| ||||||||| ||||||| || ||||| |||||    
T  44977365 aaccatatttaaaggtggtccaccgtaaaccttattaaa 44977403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 316 - 389
Target Start/End: Original strand, 9633884 - 9633957
Alignment:
Q  316 tctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  9633884 tctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagaccttattaaa 9633957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 246 - 383
Target Start/End: Complemental strand, 30551666 - 30551529
Alignment:
Q  246 aaatagtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtcta 345  Q
    |||| ||||| |||||||||||| | | || |||||||||||||| ||||   ||||||| | |||||| |||||||||||||||| |||||||||||||    
T  30551666 aaatggtcccttaactaaaaaacatttcaatttggtcccttatgttttctatcgttacctcttttggtcatctccgttagtttttagcatcaaatgtcta 30551567  T
Q  346 aggtgaaccatgtttaaaggtagtccaccatagacctt 383  Q
    | ||||||||| || |||||| || |||||| ||||||    
T  30551566 aagtgaaccatattaaaaggtggtgcaccatggacctt 30551529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 246 - 383
Target Start/End: Complemental strand, 37624647 - 37624510
Alignment:
Q  246 aaatagtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtcta 345  Q
    |||| ||||| |||||||||||||| | || ||||||| |||||| ||||   ||||| | | |||||| ||||||||||||||||||||||||||||||    
T  37624647 aaatggtcccttaactaaaaaacgtttcaatttggtccgttatgttttctgtcgttacatcttttggtcctctccgttagtttttaacatcaaatgtcta 37624548  T
Q  346 aggtgaaccatgtttaaaggtagtccaccatagacctt 383  Q
    | ||||||||| || |||||| || |||||| ||||||    
T  37624547 aagtgaaccatattaaaaggttgtgcaccatggacctt 37624510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 52742989 - 52742917
Alignment:
Q  310 tggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagacct 382  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||    
T  52742989 tggtcctctccgttagtttttaacatcaaatgtttaaggtgaaccatgtttaaaggtggtacaccatagacct 52742917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 246 - 388
Target Start/End: Original strand, 27689321 - 27689464
Alignment:
Q  246 aaatagtcccctaactaaaaaa-cgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtct 344  Q
    |||| ||||| ||||||||||| ||| | || |||||| ||||||| ||||   ||||||| | |||||| ||||||||||||||||||| |||||||||    
T  27689321 aaatggtcccttaactaaaaaaacgtttcaatttggtctcttatgttttctgtcgttacctcttttggtcctctccgttagtttttaacaccaaatgtct 27689420  T
Q  345 aaggtgaaccatgtttaaaggtagtccaccatagaccttgttaa 388  Q
    || ||||||||| ||||||||| ||||| ||| |||||| ||||    
T  27689421 aaagtgaaccatatttaaaggtggtccatcatggaccttattaa 27689464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 246 - 383
Target Start/End: Complemental strand, 22766897 - 22766760
Alignment:
Q  246 aaatagtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtcta 345  Q
    |||| ||||| |||||||||||||| | || ||| |||||||||| ||||   ||| ||| | |||||| | ||||||||||||||||| ||||| ||||    
T  22766897 aaatggtcccttaactaaaaaacgtttcaatttgatcccttatgttttctgtcgttgcctcttttggtcctttccgttagtttttaacaccaaatatcta 22766798  T
Q  346 aggtgaaccatgtttaaaggtagtccaccatagacctt 383  Q
    | ||||||||| ||||||||| ||||||||| ||||||    
T  22766797 aagtgaaccatatttaaaggtggtccaccatggacctt 22766760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 246 - 383
Target Start/End: Complemental strand, 23082203 - 23082066
Alignment:
Q  246 aaatagtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtcta 345  Q
    |||| ||||| |||||||||||||| | || |||||||||||| | ||||   ||| ||| | |||||| | ||||||||||||||||| ||||| ||||    
T  23082203 aaatggtcccttaactaaaaaacgtttcaatttggtcccttatattttctgtcgttgcctcttttggtcctttccgttagtttttaacaccaaatatcta 23082104  T
Q  346 aggtgaaccatgtttaaaggtagtccaccatagacctt 383  Q
    | ||||||||| ||||||||| ||||||||| ||||||    
T  23082103 aagtgaaccatatttaaaggtggtccaccatggacctt 23082066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 316 - 383
Target Start/End: Complemental strand, 49141503 - 49141436
Alignment:
Q  316 tctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagacctt 383  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| |  |||||||||||||||    
T  49141503 tctccgttagtttttaacatcaaatgtctaaggtgaaccatatttaaagttgttccaccatagacctt 49141436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 424 - 514
Target Start/End: Complemental strand, 52742877 - 52742787
Alignment:
Q  424 aaaagagaattgttggatcatttaaggtctattgtattttattgtaaaccaccaacaccaaatattttcctcacctttcttcatcttcttc 514  Q
    ||||||||||||||||||||   | | |||||||||||||| ||||||||||  ||||| |||||||| ||||||||||||||||||||||    
T  52742877 aaaagagaattgttggatcacaaaggatctattgtattttactgtaaaccactgacacctaatatttttctcacctttcttcatcttcttc 52742787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 251 - 355
Target Start/End: Original strand, 9415668 - 9415772
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtg 350  Q
    ||||| |||||||||||||||||||||||||||||||||| || | | ||||||| | ||||||  || ||||||||||||||   |||| |||||||||    
T  9415668 gtcccttaactaaaaaacgtcttaaattggtcccttatgtattatgccgttacctattttggtccacttcgttagtttttaaccataaatatctaaggtg 9415767  T
Q  351 aacca 355  Q
    |||||    
T  9415768 aacca 9415772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 251 - 330
Target Start/End: Original strand, 51217662 - 51217741
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagttttt 330  Q
    ||||||||| ||||||| | || |||||||||||||||||||||||| ||||||| | |||||| |||||||||||||||    
T  51217662 gtcccctaattaaaaaatgcctcaaattggtcccttatgtcttcttccgttacctctcttggtcctctccgttagttttt 51217741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 299 - 381
Target Start/End: Original strand, 50678455 - 50678537
Alignment:
Q  299 gttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagacc 381  Q
    ||||||| | |||||| |||| |||||||||||||||||||  ||||||||||||||| ||||||||| || |||||||||||    
T  50678455 gttacctcttttggtcctctctgttagtttttaacatcaaaactctaaggtgaaccatatttaaaggtggttcaccatagacc 50678537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 319 - 389
Target Start/End: Complemental strand, 51726848 - 51726778
Alignment:
Q  319 ccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    ||||||||||||||| | |||||||||||||||||||  |||| |||| |||||||||||||||| |||||    
T  51726848 ccgttagtttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaaa 51726778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 26056161 - 26056092
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatag 378  Q
    |||||| |||||||||| ||||||||||||| |||||| ||||||||| ||||||||| || ||||||||    
T  26056161 ttggtcctctccgttagattttaacatcaaaagtctaaagtgaaccatatttaaaggtggttcaccatag 26056092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 643 - 695
Target Start/End: Complemental strand, 47561285 - 47561234
Alignment:
Q  643 aattcattttttaataaatttcatccatgaatattgttctccttcatccattt 695  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  47561285 aattcattttttaataaatttcatccatgaatattg-tctcctacatccattt 47561234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 424 - 491
Target Start/End: Original strand, 27689502 - 27689569
Alignment:
Q  424 aaaagagaattgttggatcatttaaggtctattgtattttattgtaaaccaccaacaccaaatatttt 491  Q
    |||||| |||||||||||||| || |||||||||||||||| ||| |||||| |||||| ||||||||    
T  27689502 aaaagataattgttggatcatgtagggtctattgtattttagtgtgaaccactaacacctaatatttt 27689569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 424 - 491
Target Start/End: Complemental strand, 30551490 - 30551423
Alignment:
Q  424 aaaagagaattgttggatcatttaaggtctattgtattttattgtaaaccaccaacaccaaatatttt 491  Q
    ||||||| ||||||||||||| || |||||||||||||||| ||| |||||| |||||| ||||||||    
T  30551490 aaaagaggattgttggatcatgtagggtctattgtattttagtgtgaaccactaacacctaatatttt 30551423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 309 - 383
Target Start/End: Original strand, 14169721 - 14169795
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagacctt 383  Q
    |||||||| || ||||||||||||| | |||||||||||||||||||  |||| |||| | ||||||||||||||    
T  14169721 ttggtcttatctgttagtttttaaccttaaatgtctaaggtgaaccaactttataggtggcccaccatagacctt 14169795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 316 - 377
Target Start/End: Original strand, 14764338 - 14764399
Alignment:
Q  316 tctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccata 377  Q
    |||| ||||||||||||||| |||||| ||||||||||| | ||||||||| ||||||||||    
T  14764338 tctctgttagtttttaacattaaatgtttaaggtgaaccttatttaaaggtggtccaccata 14764399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 316 - 389
Target Start/End: Original strand, 21277103 - 21277176
Alignment:
Q  316 tctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    ||||| ||||||||| || | |||||||||||||||||||  |||| |||| |||||||||||||||| |||||    
T  21277103 tctccattagtttttgaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaaa 21277176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 48935182 - 48935105
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagttt 328  Q
    |||||||||||| |||  |||| || ||||||||||||||||||| | ||||||| | |||||| |||||||||||||    
T  48935182 gtcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcatctccgttagttt 48935105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 309 - 389
Target Start/End: Original strand, 8092700 - 8092780
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| | ||||||||| |||||| | |||| ||||||||||||||  |||| |||| |||||||||||||||| |||||    
T  8092700 ttggtcctttccgttagtatttaaccttaaatatctaaggtgaaccaactttataggtggtccaccatagaccttattaaa 8092780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 432 - 487
Target Start/End: Complemental strand, 23082019 - 23081964
Alignment:
Q  432 attgttggatcatttaaggtctattgtattttattgtaaaccaccaacaccaaata 487  Q
    |||||||||| || ||||||||||||||||||| |||||||||| |||||| ||||    
T  23082019 attgttggataatgtaaggtctattgtattttagtgtaaaccactaacacctaata 23081964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 257 - 332
Target Start/End: Complemental strand, 34654406 - 34654331
Alignment:
Q  257 taactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaa 332  Q
    |||||| ||||||| | || |||||| |||||||||||| | ||||||| |||||||| ||||||||| |||||||    
T  34654406 taactataaaacgtttcaatttggtctcttatgtcttctaccgttacctctattggtcctctccgttaatttttaa 34654331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 424 - 491
Target Start/End: Complemental strand, 37624471 - 37624404
Alignment:
Q  424 aaaagagaattgttggatcatttaaggtctattgtattttattgtaaaccaccaacaccaaatatttt 491  Q
    ||||||| ||||||| ||||| || |||||||||||||||| ||| |||||| |||||| ||||||||    
T  37624471 aaaagaggattgttgaatcatgtagggtctattgtattttagtgtgaaccactaacacctaatatttt 37624404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 251 - 333
Target Start/End: Original strand, 35683099 - 35683181
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaac 333  Q
    |||||||||||| |||  |||| || ||||||||||||||||||| | ||||||| | |||||| |||||||||  |||||||    
T  35683099 gtcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcctctccgttacattttaac 35683181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 251 - 288
Target Start/End: Original strand, 37623294 - 37623331
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttat 288  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  37623294 gtcccctaattaaaaaacgtcttaaattggtcccttat 37623331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 316 - 388
Target Start/End: Complemental strand, 19466212 - 19466140
Alignment:
Q  316 tctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaa 388  Q
    |||||||||||||||||| ||||||||||| |||| || |   ||| || |||||||||||||||||| ||||    
T  19466212 tctccgttagtttttaacctcaaatgtctatggtggactaacattatagatagtccaccatagaccttattaa 19466140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 277 - 328
Target Start/End: Complemental strand, 25889538 - 25889487
Alignment:
Q  277 ttggtcccttatgtcttcttctgttacctttattggtcttctccgttagttt 328  Q
    |||||| |||||||||||||| ||||||| | |||||| |||||||||||||    
T  25889538 ttggtcacttatgtcttcttccgttacctcttttggtcctctccgttagttt 25889487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 512
Target Start/End: Original strand, 44977421 - 44977499
Alignment:
Q  433 ttgttggatcatttaaggtctattgtattttattgtaaaccaccaacaccaaatattttcctcacctttcttcatcttct 512  Q
    ||||| |||||| || |||||||||||||| ||||| |||||| | |||| ||| |||| ||||| ||||||||||||||    
T  44977421 ttgtttgatcatgtagggtctattgtatttaattgtgaaccactaccacctaat-tttttctcacttttcttcatcttct 44977499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 432 - 474
Target Start/End: Complemental strand, 22766712 - 22766670
Alignment:
Q  432 attgttggatcatttaaggtctattgtattttattgtaaacca 474  Q
    |||||||||| || ||||||||||||||||||| |||||||||    
T  22766712 attgttggataatgtaaggtctattgtattttagtgtaaacca 22766670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 2238050 - 2237973
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagttt 328  Q
    ||||| |||||| |||  |||| || |||||||||||||||||||   ||||||| | |||||| |||||||||||||    
T  2238050 gtcccataactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgttagttt 2237973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 35684274 - 35684198
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagttt 328  Q
    |||||||||||| |||  |||| || |||||||||||||||||||   ||||||| | |||||| |||||||||||||    
T  35684274 gtcccctaactataaat-gtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgttagttt 35684198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 3e-41; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 251 - 377
Target Start/End: Complemental strand, 7483597 - 7483471
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtg 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||| ||||||||||||||||||||||||| |||||||||    
T  7483597 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttccgttacctcttttggtcatctccgttagtttttaacatcaaatatctaaggtg 7483498  T
Q  351 aaccatgtttaaaggtagtccaccata 377  Q
    |||||| || ||| || | ||||||||    
T  7483497 aaccatattaaaaagtggcccaccata 7483471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 252 - 377
Target Start/End: Complemental strand, 17350173 - 17350048
Alignment:
Q  252 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtga 351  Q
    ||||||||||| |||  |||| || ||||||||||||||||||| ||||||||| | |||||| ||||||||||||||||||||||||||||||||||||    
T  17350173 tcccctaactataaagtgtctcaatttggtcccttatgtcttctcctgttacctcttttggtcctctccgttagtttttaacatcaaatgtctaaggtga 17350074  T
Q  352 accatgtttaaaggtagtccaccata 377  Q
    ||||| ||||||||| ||||||||||    
T  17350073 accatatttaaaggtggtccaccata 17350048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 251 - 377
Target Start/End: Original strand, 39133061 - 39133187
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtg 350  Q
    |||||||||||| |||  |||| || |||||||||||||||||||   ||||||| | |||||| |||| ||||||||||||||||||||||||||||||    
T  39133061 gtcccctaactataaagtgtctcaatttggtcccttatgtcttctctcgttacctcttttggtcctctctgttagtttttaacatcaaatgtctaaggtg 39133160  T
Q  351 aaccatgtttaaaggtagtccaccata 377  Q
    |||||| ||||||||| ||||||||||    
T  39133161 aaccatatttaaaggtggtccaccata 39133187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 262 - 377
Target Start/End: Original strand, 31638173 - 31638290
Alignment:
Q  262 aaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaa--atgtctaaggtgaaccatgtt 359  Q
    ||||||||||| |||||||| |||||||||||||| |||||||| | ||| || |||||| ||||||||||||||||  || ||||||||||||||| ||    
T  31638173 aaaaaacgtctcaaattggttccttatgtcttcttatgttacctcttttgatcctctccgctagtttttaacatcaaatatatctaaggtgaaccatatt 31638272  T
Q  360 taaaggtagtccaccata 377  Q
    ||||||| ||| ||||||    
T  31638273 taaaggtggtctaccata 31638290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 309 - 383
Target Start/End: Original strand, 19622107 - 19622181
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagacctt 383  Q
    |||||| |||||||||||||| |||||||||||| |||||||||| |||||||||||| ||||||| ||||||||    
T  19622107 ttggtcctctccgttagttttcaacatcaaatgtttaaggtgaactatgtttaaaggtggtccaccgtagacctt 19622181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 424 - 517
Target Start/End: Original strand, 8371435 - 8371527
Alignment:
Q  424 aaaagagaattgttggatcatttaaggtctattgtattttattgtaaaccaccaacaccaaatattttcctcacctttcttcatcttcttcatc 517  Q
    ||||||| ||||||||||||| ||  |||||||||||| ||||||||||||| |||||| |||||||| ||||| |||||||||| ||||||||    
T  8371435 aaaagaggattgttggatcatatatagtctattgtattctattgtaaaccactaacacctaatatttt-ctcacttttcttcatcatcttcatc 8371527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 309 - 383
Target Start/End: Complemental strand, 34903008 - 34902934
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagacctt 383  Q
    |||||| ||||||||||||||||||| ||||||||||| ||||||||| ||||||||| || |||||| ||||||    
T  34903008 ttggtcatctccgttagtttttaacaccaaatgtctaaagtgaaccatatttaaaggtggtgcaccatggacctt 34902934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 309 - 383
Target Start/End: Original strand, 47765540 - 47765614
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagacctt 383  Q
    |||||| ||||||||||||||||||||||||| ||| |||||||||||  |||||| | ||||||||||||||||    
T  47765540 ttggtcatctccgttagtttttaacatcaaatatcttaggtgaaccattgttaaagatggtccaccatagacctt 47765614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 309 - 389
Target Start/End: Original strand, 53808420 - 53808500
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| ||||| ||||||||||||||||||| ||||||||||| ||| | ||||||| |||||||||| ||||| |||||    
T  53808420 ttggtcatctccattagtttttaacatcaaatttctaaggtgaatcatatctaaaggtggtccaccataaaccttattaaa 53808500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 309 - 379
Target Start/End: Original strand, 11219532 - 11219602
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccataga 379  Q
    |||||| |||||||||| |||||||||||||  ||||||||||||||| ||||||||| || |||||||||    
T  11219532 ttggtcatctccgttagattttaacatcaaaattctaaggtgaaccatatttaaaggtggttcaccataga 11219602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 300 - 381
Target Start/End: Original strand, 32979181 - 32979262
Alignment:
Q  300 ttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagacc 381  Q
    |||||| | |||||| |||||||||||||||||||| ||| | ||||||||||| || ||||||||| || |||||||||||    
T  32979181 ttacctcttttggtcctctccgttagtttttaacattaaaagactaaggtgaactatatttaaaggtggttcaccatagacc 32979262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 424 - 517
Target Start/End: Original strand, 53808533 - 53808626
Alignment:
Q  424 aaaagagaattgttggatcatttaaggtctattgtattttattgtaaaccaccaacaccaaatattttcctcacctttcttcatcttcttcatc 517  Q
    |||||||||| |||||||||| || | |||||||||||||| ||| |||||| |||||| |||||||| |  ||  ||||||||||||||||||    
T  53808533 aaaagagaatcgttggatcatgtaggatctattgtattttactgtgaaccactaacacctaatatttttcatacagttcttcatcttcttcatc 53808626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 247 - 329
Target Start/End: Original strand, 26797359 - 26797441
Alignment:
Q  247 aatagtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttt 329  Q
    ||||||| |||||||||||||||||| |||||||| |||||||| || | | ||||||| | |||| | ||||||||||||||    
T  26797359 aatagtcacctaactaaaaaacgtctcaaattggttccttatgtattatgccgttacctatcttggccctctccgttagtttt 26797441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 424 - 514
Target Start/End: Original strand, 47765654 - 47765744
Alignment:
Q  424 aaaagagaattgttggatcatttaaggtctattgtattttattgtaaaccaccaacaccaaatattttcctcacctttcttcatcttcttc 514  Q
    ||||||| ||||||||||||| || ||||||||||||||||  || |||||| |||||  |||||| |  |||| ||||||||||||||||    
T  47765654 aaaagaggattgttggatcatgtagggtctattgtattttagcgtgaaccactaacacttaatattcttttcacttttcttcatcttcttc 47765744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 251 - 383
Target Start/End: Original strand, 8371264 - 8371396
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtg 350  Q
    |||||||||||| |||| |||| || ||||| || ||  |||||| | |||  || | |||||| ||||||||||||||||||||||||| ||||| | |    
T  8371264 gtcccctaactataaaatgtctcaatttggttccataaatcttctgcagtttactattttggtcctctccgttagtttttaacatcaaatatctaaagcg 8371363  T
Q  351 aaccatgtttaaaggtagtccaccatagacctt 383  Q
    |||| |  ||| |||| ||||||||| ||||||    
T  8371364 aaccgtacttagaggtggtccaccatggacctt 8371396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 309 - 389
Target Start/End: Original strand, 23559921 - 23560001
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| |||||||||||||||||| | || |||||||| |||||||  |||| |||| |||||||||||| ||| |||||    
T  23559921 ttggtcctctccgttagtttttaaccttaattgtctaagatgaaccaactttataggtggtccaccatagatcttattaaa 23560001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 251 - 330
Target Start/End: Original strand, 17345355 - 17345433
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagttttt 330  Q
    ||||||||||||||||   ||| || ||||| |||||  |||||||||||||||||| |||||| |||||||||||||||    
T  17345355 gtcccctaactaaaaagtatctcaatttggttccttaaatcttcttctgttaccttt-ttggtcctctccgttagttttt 17345433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 321 - 363
Target Start/End: Complemental strand, 24753504 - 24753462
Alignment:
Q  321 gttagtttttaacatcaaatgtctaaggtgaaccatgtttaaa 363  Q
    ||||||||||||| |||||||||||||||||||||| ||||||    
T  24753504 gttagtttttaacttcaaatgtctaaggtgaaccatctttaaa 24753462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 251 - 333
Target Start/End: Complemental strand, 32974295 - 32974213
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaac 333  Q
    |||||||||||| |||  |||| || ||||||||||||||||||| | ||||||| | |||||| |||||||||  |||||||    
T  32974295 gtcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcatctccgttacattttaac 32974213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 32973183 - 32973260
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagttt 328  Q
    |||||||||||| |||  |||| || ||||||||||||||||||| | ||||||| | || ||| |||||||||||||    
T  32973183 gtcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctctttttgtcctctccgttagttt 32973260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 53049109 - 53049032
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagttt 328  Q
    |||||||||||| |||  |||| || |||||||||||||||||||   ||||||| | |||||| |||||||||||||    
T  53049109 gtcccctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgttagttt 53049032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 309 - 389
Target Start/End: Complemental strand, 12062398 - 12062318
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| | ||| |||||||||||| | |||||||||||||||||||  |||| ||||  ||||||||| ||||| |||||    
T  12062398 ttggtcatttccattagtttttaaccttaaatgtctaaggtgaaccaactttataggtgatccaccatataccttattaaa 12062318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 251 - 383
Target Start/End: Original strand, 25583158 - 25583289
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtg 350  Q
    ||||||||||||  |||||||| || |||||||| || ||||||| | |||  || | |||||| |||| |||| |||||||| | |||||||||||| |    
T  25583158 gtcccctaactattaaacgtctcaatttggtcccataagtcttctgccgtttactattttggtcctctctgttaatttttaaccttaaatgtctaaggcg 25583257  T
Q  351 aaccatgtttaaaggtagtccaccatagacctt 383  Q
    ||| ||  ||||||||  |||||||||| ||||    
T  25583258 aactat-attaaaggtgctccaccataggcctt 25583289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 34901696 - 34901740
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttct 295  Q
    ||||| ||| |||||||||||||||||||||||||||||| ||||    
T  34901696 gtcccttaattaaaaaacgtcttaaattggtcccttatgtattct 34901740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 424 - 491
Target Start/End: Complemental strand, 34902895 - 34902828
Alignment:
Q  424 aaaagagaattgttggatcatttaaggtctattgtattttattgtaaaccaccaacaccaaatatttt 491  Q
    ||||||| ||||||||||||| || ||| |||||| ||||| ||| |||||| |||||| ||||||||    
T  34902895 aaaagaggattgttggatcatgtagggtttattgttttttagtgtgaaccactaacacctaatatttt 34902828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 251 - 333
Target Start/End: Complemental strand, 5417120 - 5417038
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaac 333  Q
    |||||||||||| |||  |||| | |||||||||||||||||| |  |||||||| | |||||||| |||||||  |||||||    
T  5417120 gtcccctaactataaagtgtctcagattggtcccttatgtcttttgttgttacctcttttggtcttatccgttatattttaac 5417038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 251 - 333
Target Start/End: Complemental strand, 48035396 - 48035314
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaac 333  Q
    |||||||||||| |||  |||| || ||||||||||||||||| | | ||||||| | |||||| |||||||||  |||||||    
T  48035396 gtcccctaactataaagtgtctcaatttggtcccttatgtcttatgccgttacctcttttggtcctctccgttacattttaac 48035314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 251 - 333
Target Start/End: Original strand, 53047941 - 53048023
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaac 333  Q
    |||||||||||| |||  |||| || |||||||||||||||||||   ||||||| | |||||| |||||||||  |||||||    
T  53047941 gtcccctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgttacattttaac 53048023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 453 - 514
Target Start/End: Original strand, 32979332 - 32979392
Alignment:
Q  453 tattgtattttattgtaaaccaccaacaccaaatattttcctcacctttcttcatcttcttc 514  Q
    ||||||| ||||||||||| ||| |||||| |||| ||| |||| |||||||||||||||||    
T  32979332 tattgtactttattgtaaatcactaacacctaatacttttctca-ctttcttcatcttcttc 32979392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 52293595 - 52293518
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagttt 328  Q
    |||||||||||| |||  |||| || ||||||| |||||||||||   ||||||| | |||||| |||||||||||||    
T  52293595 gtcccctaactataaagtgtctcaatttggtcctttatgtcttctatcgttacctcttttggtcctctccgttagttt 52293518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 83; Significance: 6e-39; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 255 - 377
Target Start/End: Complemental strand, 207866 - 207744
Alignment:
Q  255 cctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtgaacc 354  Q
    ||||| |||||||||||| |||||| ||||||||||||||||| |||| || | |||||| ||||||||||||||||||||||||||||| |||||||||    
T  207866 cctaattaaaaaacgtctcaaattgatcccttatgtcttcttccgttatctcttttggtcctctccgttagtttttaacatcaaatgtcttaggtgaacc 207767  T
Q  355 atgtttaaaggtagtccaccata 377  Q
    |||||||||||| ||||||||||    
T  207766 atgtttaaaggtggtccaccata 207744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 252 - 377
Target Start/End: Original strand, 26205058 - 26205183
Alignment:
Q  252 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtga 351  Q
    |||| |||||||||||||||| |||||||||||||||||||||||| |||||||   |||||| ||||||||||||||||||||||||||||||||||||    
T  26205058 tcccttaactaaaaaacgtctcaaattggtcccttatgtcttcttccgttacctcgtttggtcctctccgttagtttttaacatcaaatgtctaaggtga 26205157  T
Q  352 accatgtttaaaggtagtccaccata 377  Q
    |||||  ||||| || ||||||||||    
T  26205158 accatacttaaaagtggtccaccata 26205183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 247 - 377
Target Start/End: Original strand, 14714532 - 14714662
Alignment:
Q  247 aatagtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaa 346  Q
    ||||||||| ||||| |||||||| | ||||||||  |||||||||||||| ||||||  | |||||| |||||||||||||||||||||||||||||||    
T  14714532 aatagtcccttaacttaaaaacgtttcaaattggttgcttatgtcttcttccgttaccacttttggtcctctccgttagtttttaacatcaaatgtctaa 14714631  T
Q  347 ggtgaaccatgtttaaaggtagtccaccata 377  Q
    |||||||||| ||||||||| ||||||||||    
T  14714632 ggtgaaccatatttaaaggtggtccaccata 14714662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 251 - 377
Target Start/End: Original strand, 4512150 - 4512276
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtg 350  Q
    ||||| |||||||||||||||| ||||||||||||| |||||||||| ||||||| | |||||| ||||| ||||||||||||||||||| |||||||||    
T  4512150 gtcccataactaaaaaacgtctcaaattggtcccttgtgtcttcttccgttacctcttttggtcctctccattagtttttaacatcaaatatctaaggtg 4512249  T
Q  351 aaccatgtttaaaggtagtccaccata 377  Q
    |||||| || ||| || ||||||||||    
T  4512250 aaccatattaaaaagtggtccaccata 4512276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 424 - 517
Target Start/End: Complemental strand, 21010399 - 21010306
Alignment:
Q  424 aaaagagaattgttggatcatttaaggtctattgtattttattgtaaaccaccaacaccaaatattttcctcacctttcttcatcttcttcatc 517  Q
    |||||| |||||||||||||  || |||||||||||||||||| | |||||| |||||| |||||||| ||||| |||||||||||||||||||    
T  21010399 aaaagataattgttggatcaggtagggtctattgtattttattatgaaccactaacacctaatatttttctcacttttcttcatcttcttcatc 21010306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 326 - 389
Target Start/End: Complemental strand, 7983692 - 7983629
Alignment:
Q  326 tttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||    
T  7983692 tttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagatcttattaaa 7983629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 309 - 389
Target Start/End: Complemental strand, 29424626 - 29424546
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| |||| |||||||  |||||||||||||||||| |||||||||||||||||| ||||| |||||||||| |||||    
T  29424626 ttggtcctctctgttagttactaacatcaaatgtctaagatgaaccatgtttaaaggtggtccatcatagaccttattaaa 29424546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 246 - 376
Target Start/End: Complemental strand, 41296531 - 41296401
Alignment:
Q  246 aaatagtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtcta 345  Q
    |||| ||||| |||||||||||||| | || |||||||||||||| || |   |||| || | |||||| ||||||||||||||||||| ||||||||||    
T  41296531 aaatggtcccttaactaaaaaacgtttcaatttggtcccttatgttttttgtcgttatctcttttggtcctctccgttagtttttaacaccaaatgtcta 41296432  T
Q  346 aggtgaaccatgtttaaaggtagtccaccat 376  Q
    | ||||| ||| || |||||| || ||||||    
T  41296431 aagtgaatcatattaaaaggtggtgcaccat 41296401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 309 - 381
Target Start/End: Original strand, 12852988 - 12853060
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagacc 381  Q
    |||||| |||||||||| |||||||||||||  ||||||||||||||| ||||||||| || |||||||||||    
T  12852988 ttggtcatctccgttagattttaacatcaaaaatctaaggtgaaccatatttaaaggtggttcaccatagacc 12853060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 257 - 347
Target Start/End: Original strand, 8537062 - 8537152
Alignment:
Q  257 taactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaag 347  Q
    ||||||||||| |||| ||||||||||||||||| ||||   |||| || | |||||| |||||||||||||||||| | |||||||||||    
T  8537062 taactaaaaaatgtctcaaattggtcccttatgtattctgtcgttatctattttggtcatctccgttagtttttaaccttaaatgtctaag 8537152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 254 - 304
Target Start/End: Original strand, 37982738 - 37982788
Alignment:
Q  254 ccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacc 304  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  37982738 ccctaactaaaaaacgtctcaaattggtcccttatgtcttcttccgttacc 37982788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 45047453 - 45047511
Alignment:
Q  318 tccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccat 376  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||||||||| |||||||||    
T  45047453 tccgttaatttttaatatcaaatgtctaaggtgaaccatatttaaaggtggtccaccat 45047511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 659 - 728
Target Start/End: Complemental strand, 7983336 - 7983267
Alignment:
Q  659 aatttcatccatgaatattgttctccttcatccatttaaatgatcaaaacacaaacataaaccatatata 728  Q
    ||||||||||||||||||||| ||||||||||  ||| ||| |||||||||||||| |||||||| ||||    
T  7983336 aatttcatccatgaatattgtcctccttcatcatttttaataatcaaaacacaaacttaaaccatgtata 7983267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 300 - 389
Target Start/End: Complemental strand, 37869062 - 37868974
Alignment:
Q  300 ttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||||| ||||||||||||||| ||||||||| | ||||||||||||||| |||  |||| |||| |||||| ||||||||| |||||    
T  37869062 ttaccttt-ttggtcttctccgtttgtttttaaccttaaatgtctaaggtgagccaactttataggtggtccacaatagaccttattaaa 37868974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 309 - 389
Target Start/End: Original strand, 14509311 - 14509391
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| ||||||||| |||||||| | ||||||||||||| |||||  |||| |||| |||||||||||||||| |||||    
T  14509311 ttggtcctctccgttaatttttaaccttaaatgtctaaggtaaaccaactttataggtggtccaccatagaccttattaaa 14509391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 310 - 381
Target Start/End: Complemental strand, 3528278 - 3528207
Alignment:
Q  310 tggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagacc 381  Q
    ||||||||||  ||||||||||| | |||| |||||||||||||||| ||||||||| || |||||||||||    
T  3528278 tggtcttctctattagtttttaatagcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagacc 3528207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 318 - 389
Target Start/End: Complemental strand, 25570875 - 25570804
Alignment:
Q  318 tccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||||||||||||  | |||||||||||||||||||  |||| |||| |||||||||||||||| |||||    
T  25570875 tccgttagtttttaaacttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaaa 25570804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 299 - 389
Target Start/End: Complemental strand, 21010522 - 21010432
Alignment:
Q  299 gttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    ||||| ||| |||||| |||| ||||||| |||||||||||||||||| ||||||| | ||||||||| ||| | |||| ||||| |||||    
T  21010522 gttacattttttggtcctctctgttagttgttaacatcaaatgtctaatgtgaaccgtatttaaaggtggtctatcataaaccttattaaa 21010432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 316 - 389
Target Start/End: Original strand, 10367348 - 10367421
Alignment:
Q  316 tctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||||| ||||||||| | |||||||||||||||||||  |||| |||| |||||| ||||||||| |||||    
T  10367348 tctccgtttgtttttaaccttaaatgtctaaggtgaaccaactttataggtggtccacaatagaccttattaaa 10367421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 252 - 328
Target Start/End: Original strand, 2305585 - 2305661
Alignment:
Q  252 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagttt 328  Q
    ||||||||||| |||  |||| || ||||||||||||||||||| | ||||||| | |||||| |||||||||||||    
T  2305585 tcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcctctccgttagttt 2305661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 254 - 330
Target Start/End: Complemental strand, 4513822 - 4513746
Alignment:
Q  254 ccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagttttt 330  Q
    |||||||||||||||||||||||||||||  |||||||||||   ||||||| | ||| |  |||||||||||||||    
T  4513822 ccctaactaaaaaacgtcttaaattggtcttttatgtcttctgtcgttacctcttttgattctctccgttagttttt 4513746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 326 - 377
Target Start/End: Original strand, 3532313 - 3532364
Alignment:
Q  326 tttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccata 377  Q
    |||||||||| |||||| ||||||||||||| ||||||||| ||||||||||    
T  3532313 tttttaacattaaatgtttaaggtgaaccatatttaaaggtggtccaccata 3532364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 463 - 514
Target Start/End: Complemental strand, 7983567 - 7983516
Alignment:
Q  463 tattgtaaaccaccaacaccaaatattttcctcacctttcttcatcttcttc 514  Q
    |||||||||||||||||||| |||||||| |||||||||||| ||| |||||    
T  7983567 tattgtaaaccaccaacacctaatatttttctcacctttctttatcatcttc 7983516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 316 - 389
Target Start/End: Complemental strand, 12959712 - 12959639
Alignment:
Q  316 tctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||||| || |||||| | |||||||||||||||||||  |||| |||| |||||| ||||||||| |||||    
T  12959712 tctccgtttgtctttaaccttaaatgtctaaggtgaaccaactttataggtggtccacaatagaccttattaaa 12959639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 379
Target Start/End: Complemental strand, 15850692 - 15850603
Alignment:
Q  290 tcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccataga 379  Q
    |||||| ||||||||| | ||||||  || ||||||||||||||   |||||||||||||||||||   ||| |||| ||||||||||||    
T  15850692 tcttctgctgttacctattttggtccacttcgttagtttttaaccctaaatgtctaaggtgaaccaacattataggtggtccaccataga 15850603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 7490209 - 7490165
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaac 353  Q
    |||||||| |||||||||||||||| | |||||||||||||||||    
T  7490209 ttggtcttatccgttagtttttaaccttaaatgtctaaggtgaac 7490165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 309 - 389
Target Start/End: Original strand, 23177776 - 23177856
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| |||||||||||||||||||| |||  |||||| |||||||| ||||||| | || |||| |||| ||| |||||    
T  23177776 ttggtcctctccgttagtttttaacataaaaaatctaagatgaaccatatttaaagatggttcaccgtagatcttattaaa 23177856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 309 - 389
Target Start/End: Original strand, 23589033 - 23589113
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| |||||||||||||||||||| |||  |||||| |||||||| ||||||| | || |||| |||| ||| |||||    
T  23589033 ttggtcctctccgttagtttttaacataaaaaatctaagatgaaccatatttaaagatggttcaccgtagatcttattaaa 23589113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 424 - 476
Target Start/End: Complemental strand, 29424513 - 29424462
Alignment:
Q  424 aaaagagaattgttggatcatttaaggtctattgtattttattgtaaaccacc 476  Q
    ||||||| ||||||||||||| ||||||||||| || ||||||||||||||||    
T  29424513 aaaagaggattgttggatcatgtaaggtctatt-taatttattgtaaaccacc 29424462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 376
Target Start/End: Complemental strand, 28109883 - 28109816
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccat 376  Q
    |||||| ||||||||| |||||||| | |||||||||||||||||||  |||  |||| |||||||||    
T  28109883 ttggtcctctccgttattttttaaccttaaatgtctaaggtgaaccaactttgtaggtggtccaccat 28109816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 251 - 330
Target Start/End: Original strand, 41295149 - 41295228
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagttttt 330  Q
    ||||||||| |||||||||||| ||||||||||||||| | |||| | |||| || | |||||| || | ||||||||||    
T  41295149 gtcccctaattaaaaaacgtctcaaattggtcccttatatattctaccgttatctattttggtcatcgcagttagttttt 41295228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 436 - 515
Target Start/End: Original strand, 45047621 - 45047699
Alignment:
Q  436 ttggatcatttaaggtctattgtattttattgtaaaccaccaacaccaaatattttcctcacctttcttcatcttcttca 515  Q
    ||||||||| || | |||||||| ||||| ||| |||||| | ||||||||||||| || || |||||||||||||||||    
T  45047621 ttggatcatgtaggatctattgtgttttactgtgaaccactatcaccaaatatttt-cttacttttcttcatcttcttca 45047699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 251 - 333
Target Start/End: Complemental strand, 2306733 - 2306651
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaac 333  Q
    |||||||||||  |||  |||| || ||||||| ||||||||||| | ||||||| | |||||| ||||||||||||| ||||    
T  2306733 gtcccctaactgtaaagtgtctcaatttggtccattatgtcttctgccgttacctcttttggtcctctccgttagtttgtaac 2306651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 309 - 382
Target Start/End: Original strand, 4829567 - 4829640
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagacct 382  Q
    |||||| |||| |||||| |||||| | |||| |||||||| |||||  |||| |||| |||||||||||||||    
T  4829567 ttggtcctctctgttagtgtttaaccttaaatatctaaggtaaaccaactttataggtggtccaccatagacct 4829640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 4e-37; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 246 - 377
Target Start/End: Complemental strand, 2293602 - 2293471
Alignment:
Q  246 aaatagtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtcta 345  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| || | || |||||||| ||||||||||||||||| |||||||||||     
T  2293602 aaatggtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttccgtaatctctattggtcctctccgttagtttttaaaatcaaatgtctg 2293503  T
Q  346 aggtgaaccatgtttaaaggtagtccaccata 377  Q
    | ||||| ||| ||||||| | ||||||||||    
T  2293502 aagtgaatcatatttaaagatggtccaccata 2293471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 251 - 377
Target Start/End: Complemental strand, 36604913 - 36604787
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtg 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||| ||||||||||||||||| ||||||| |||||| ||    
T  36604913 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttccgttacctcttttggtcctctccgttagtttttaatatcaaatatctaagatg 36604814  T
Q  351 aaccatgtttaaaggtagtccaccata 377  Q
    |||||| || ||| || | ||||||||    
T  36604813 aaccatattaaaaagtggcccaccata 36604787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 424 - 514
Target Start/End: Original strand, 11094739 - 11094829
Alignment:
Q  424 aaaagagaattgttggatcatttaaggtctattgtattttattgtaaaccaccaacaccaaatattttcctcacctttcttcatcttcttc 514  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  11094739 aaaagaggattgttggatcatgtaaggtctattgtattttattgtaaaccaccaacacctaatatttttctcacctttcttcatcttcttc 11094829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 309 - 374
Target Start/End: Original strand, 86905 - 86970
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccacc 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  86905 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccacc 86970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 249 - 389
Target Start/End: Complemental strand, 39592363 - 39592223
Alignment:
Q  249 tagtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaagg 348  Q
    |||||||||||||| |||  |||| |||||||||| |||||||||||   |||  || | |||||  ||||||||| |||||||||||||||||||||||    
T  39592363 tagtcccctaactataaagtgtctcaaattggtccattatgtcttctgtcgtttactgttttggttctctccgttaatttttaacatcaaatgtctaagg 39592264  T
Q  349 tgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    ||| |||||||||||||| ||||| |||| ||||| |||||    
T  39592263 tgagccatgtttaaaggtggtccatcatataccttattaaa 39592223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 309 - 389
Target Start/End: Original strand, 35787898 - 35787978
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| |||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||| || |||||    
T  35787898 ttggtcctctccgttagtttttaacatcaaatgtctaaggtaaatcatgtttaaaggtggtccaccatagactttattaaa 35787978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 424 - 511
Target Start/End: Complemental strand, 39592190 - 39592104
Alignment:
Q  424 aaaagagaattgttggatcatttaaggtctattgtattttattgtaaaccaccaacaccaaatattttcctcacctttcttcatcttc 511  Q
    ||||||| ||||||||||||| || |||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| |||||    
T  39592190 aaaagaggattgttggatcatgta-ggtctattatattttattgtaaaccaccaacacctaatatttttctcacctttcttcttcttc 39592104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 251 - 389
Target Start/End: Complemental strand, 47668669 - 47668531
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtg 350  Q
    |||||||||||| |||  |||| ||||||||||||||| || ||| | |||   | | |||||| |||| |||||||||||||||||||| ||||||||     
T  47668669 gtcccctaactataaagtgtctcaaattggtcccttatatcatctgccgtttattgttttggtcctctctgttagtttttaacatcaaatatctaaggta 47668570  T
Q  351 aaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    ||||||| |||||| | |||||||||||||||| |||||    
T  47668569 aaccatggttaaagatggtccaccatagacctttttaaa 47668531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 424 - 538
Target Start/End: Original strand, 52980199 - 52980315
Alignment:
Q  424 aaaagagaattgttggatcatttaaggtctattgtattttattgtaaaccaccaacaccaaatattttcctcacctttc--ttcatcttcttcatcttca 521  Q
    ||||||| |||||||||| || ||  ||||||||||||||||||||||||||||||||| |||||||| ||||||||||  ||  |||| ||||||||||    
T  52980199 aaaagaggattgttggattatgtagagtctattgtattttattgtaaaccaccaacacctaatatttttctcacctttcttttattctttttcatcttca 52980298  T
Q  522 tggacataattattcct 538  Q
    |  ||||||| ||||||    
T  52980299 tcaacataatcattcct 52980315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 251 - 330
Target Start/End: Original strand, 2292194 - 2292273
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagttttt 330  Q
    ||||||||||||||||||| || |||||||||||||||||||||||| ||||||| | |||||| |||| ||||||||||    
T  2292194 gtcccctaactaaaaaacgcctcaaattggtcccttatgtcttcttccgttacctctcttggtcctctctgttagttttt 2292273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 424 - 514
Target Start/End: Complemental strand, 29687879 - 29687788
Alignment:
Q  424 aaaagagaattgttggatcatttaaggtctattgtattttattgtaaaccaccaacacc-aaatattttcctcacctttcttcatcttcttc 514  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||| | |||| || | |||| ||||| ||||||||||||||||    
T  29687879 aaaagagaattgttggatcatgtaaggtctattgtattttattgtgaaccactaccacctaattttttttctcacttttcttcatcttcttc 29687788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 251 - 389
Target Start/End: Complemental strand, 6616283 - 6616145
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtg 350  Q
    |||||||||||| |||  |||| ||||||||||||||| | ||||   |||   | | |||||| ||||| |||||||||||||||||||||| ||||||    
T  6616283 gtcccctaactataaagtgtctcaaattggtcccttatatattctgtcgtttattgttttggtcctctcctttagtttttaacatcaaatgtcaaaggtg 6616184  T
Q  351 aaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    ||| ||| |||||| |||||||| ||||||||| |||||    
T  6616183 aacaatgattaaagatagtccactatagaccttattaaa 6616145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 2293822 - 2293773
Alignment:
Q  1 tctgttgaactctctgctcctcccaattggaagaaattggtctctctctc 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2293822 tctgttgaactctctgctcctcccaattggaagaaattggtctctctctc 2293773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 281 - 389
Target Start/End: Complemental strand, 29688020 - 29687912
Alignment:
Q  281 tcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagac 380  Q
    ||||||||||||| |   ||||||| | |||||| ||||| |||||||||||||||||||||||| || ||||||| ||||||||| ||||||| || ||    
T  29688020 tcccttatgtcttttgtcgttacctcttttggtcatctcctttagtttttaacatcaaatgtctacggcgaaccatatttaaaggtggtccaccgtaaac 29687921  T
Q  381 cttgttaaa 389  Q
    ||| |||||    
T  29687920 cttattaaa 29687912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 251 - 330
Target Start/End: Original strand, 36604484 - 36604563
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagttttt 330  Q
    ||||||||||||||||||||||||||||||||||||||||||| |   ||||||| | ||| || |||||||||||||||    
T  36604484 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcgttacctcttttgatcatctccgttagttttt 36604563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 251 - 373
Target Start/End: Original strand, 43894149 - 43894271
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtg 350  Q
    |||||||||||| |||| |||| || |||||| | ||  | || ||||||||||| | |||||| | |||||| |||||||||||||||||||| |||||    
T  43894149 gtcccctaactataaaatgtctcaatttggtcacataactatttttctgttacctcttttggtcatatccgttggtttttaacatcaaatgtctgaggtg 43894248  T
Q  351 aaccatgtttaaaggtagtccac 373  Q
    |||||| ||||||| | ||||||    
T  43894249 aaccatatttaaagatggtccac 43894271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 309 - 389
Target Start/End: Original strand, 11094628 - 11094706
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| ||| ||||||||||||||||||||||||||||||  |||||||||||| || || ||||||||||||| |||||    
T  11094628 ttggtcctcttcgttagtttttaacatcaaatgtctaaggt--accatgtttaaatgtggttcaccatagaccttattaaa 11094706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 309 - 389
Target Start/End: Complemental strand, 6140374 - 6140294
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| | |||||||||||||||| | |||| ||||||||||||||  |||| ||||||||||||||||||||| |||||    
T  6140374 ttggtcatttccgttagtttttaaccttaaatatctaaggtgaaccaactttataggtagtccaccatagaccttattaaa 6140294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 251 - 293
Target Start/End: Complemental strand, 18358445 - 18358403
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtctt 293  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18358445 gtcccctaactaaaaaacgtcttaaattggtcccttatgtctt 18358403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 300 - 381
Target Start/End: Original strand, 44302813 - 44302894
Alignment:
Q  300 ttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagacc 381  Q
    |||||| | |||||| |||||||||||||||||||| ||| | ||||||||||| || ||||||||| || |||||||||||    
T  44302813 ttacctcttttggtcctctccgttagtttttaacattaaaagactaaggtgaactatatttaaaggtggttcaccatagacc 44302894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 432 - 514
Target Start/End: Original strand, 35788019 - 35788100
Alignment:
Q  432 attgttggatcatttaaggtctattgtattttattgtaaaccaccaacaccaaatattttcctcacctttcttcatcttcttc 514  Q
    |||||||||||||  | ||||||||| ||||||||||||| |||||||||| |||||||| || |||| ||||||||| ||||    
T  35788019 attgttggatcatgcagggtctattgcattttattgtaaatcaccaacacctaatatttttct-acctatcttcatctccttc 35788100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 272 - 388
Target Start/End: Original strand, 17494192 - 17494308
Alignment:
Q  272 ttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtcc 371  Q
    |||| |||||| |||||||||| | | |||  || |||||||  ||||||||| |||||||| | |||||||||| ||||| ||   ||||| |||||||    
T  17494192 ttaatttggtctcttatgtcttatgccgtttactatattggttatctccgttactttttaaccttaaatgtctaacgtgaaacaacgttaaaagtagtcc 17494291  T
Q  372 accatagaccttgttaa 388  Q
    |||||||||||| ||||    
T  17494292 accatagaccttattaa 17494308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 321 - 389
Target Start/End: Original strand, 50530617 - 50530685
Alignment:
Q  321 gttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||| |||||||| | ||| |||||||||||||||  |||| ||||||||||||||||||||| |||||    
T  50530617 gttaatttttaaccttaaaagtctaaggtgaaccaactttataggtagtccaccatagaccttattaaa 50530685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 309 - 355
Target Start/End: Original strand, 17319144 - 17319190
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaacca 355  Q
    ||||||||| ||||||||||||||| | |||||||||||||||||||    
T  17319144 ttggtcttcaccgttagtttttaaccttaaatgtctaaggtgaacca 17319190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 424 - 514
Target Start/End: Complemental strand, 47668505 - 47668415
Alignment:
Q  424 aaaagagaattgttggatcatttaaggtctattgtattttattgtaaaccaccaacaccaaatattttcctcacctttcttcatcttcttc 514  Q
    ||||||| |||||| |||||| || |||||||||||||||| ||| |||||| ||||   |||||| |  |||| ||||||||||||||||    
T  47668505 aaaagaggattgttcgatcatgtagggtctattgtattttagtgtgaaccactaacatttaatattcttttcacttttcttcatcttcttc 47668415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 526791 - 526714
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagttt 328  Q
    |||||||||||| |||  |||| || ||||||||||||||| |||  |||||||| | |||||| |||||||||||||    
T  526791 gtcccctaactataaagtgtctcaacttggtcccttatgtcatctgatgttacctcttttggtcctctccgttagttt 526714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 252 - 293
Target Start/End: Complemental strand, 38371876 - 38371835
Alignment:
Q  252 tcccctaactaaaaaacgtcttaaattggtcccttatgtctt 293  Q
    ||||||||||||||||||||| |||||| |||||||||||||    
T  38371876 tcccctaactaaaaaacgtctcaaattgatcccttatgtctt 38371835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 316 - 377
Target Start/End: Complemental strand, 38419024 - 38418963
Alignment:
Q  316 tctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccata 377  Q
    |||||||||||||||||||| ||| || |||| |||||||| |||| |||| ||||||||||    
T  38419024 tctccgttagtttttaacattaaacgtttaagatgaaccatatttataggtggtccaccata 38418963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 251 - 379
Target Start/End: Complemental strand, 43419447 - 43419319
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtg 350  Q
    ||||| |||||| |||  |||| || |||||||||||  |||||| | ||||||| | |||||||  | ||||||||||||||   |||||| |||||||    
T  43419447 gtcccttaactataaagtgtctcaatttggtcccttaactcttctgccgttacctattttggtctatttcgttagtttttaaccataaatgtataaggtg 43419348  T
Q  351 aaccatgtttaaaggtagtccaccataga 379  Q
    |||||   ||| |||| ||||||||||||    
T  43419347 aaccaacattataggtggtccaccataga 43419319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 251 - 293
Target Start/End: Complemental strand, 96753 - 96711
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtctt 293  Q
    |||||||||||| |||  |||||||||||||||||||||||||    
T  96753 gtcccctaactataaagtgtcttaaattggtcccttatgtctt 96711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 325 - 383
Target Start/End: Complemental strand, 26393125 - 26393067
Alignment:
Q  325 gtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagacctt 383  Q
    ||||||||||  |||||||||||||||||||   ||| |||| ||||||||||||||||    
T  26393125 gtttttaacactaaatgtctaaggtgaaccaacattataggtggtccaccatagacctt 26393067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 44160469 - 44160431
Alignment:
Q  265 aaacgtcttaaattggtcccttatgtcttcttctgttac 303  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  44160469 aaacgtctcaaattggtcccttatgtattcttctgttac 44160431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 389
Target Start/End: Complemental strand, 11114987 - 11114914
Alignment:
Q  316 tctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||||||||||||||| | ||||||||||| |||||||  |||  |||| ||| ||||||||| || |||||    
T  11114987 tctccgttagtttttaaccttaaatgtctaagctgaaccaactttgtaggtggtctaccatagactttattaaa 11114914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 5e-24; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 256 - 389
Target Start/End: Complemental strand, 18139554 - 18139421
Alignment:
Q  256 ctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtgaacca 355  Q
    ||||||| |||  |||| ||||||||||||||| |||||| | |||   | | |||||| ||||| ||||||||||||||||||||||||||||||||||    
T  18139554 ctaactataaagtgtctcaaattggtcccttatatcttctgccgtttattgttttggtcctctccattagtttttaacatcaaatgtctaaggtgaacca 18139455  T
Q  356 tgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    ||||||||| |  |||||||||||| || |||||    
T  18139454 tgtttaaagatgatccaccatagacattattaaa 18139421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 424 - 514
Target Start/End: Complemental strand, 33801918 - 33801828
Alignment:
Q  424 aaaagagaattgttggatcatttaaggtctattgtattttattgtaaaccaccaacaccaaatattttcctcacctttcttcatcttcttc 514  Q
    ||||||| ||||||||||||| || |||||||||| ||||||| ||||||||||||||   |||||||  |||||||||||||||||||||    
T  33801918 aaaagaggattgttggatcatgtagggtctattgttttttattataaaccaccaacacttgatatttttttcacctttcttcatcttcttc 33801828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 307 - 389
Target Start/End: Complemental strand, 33802033 - 33801951
Alignment:
Q  307 tattggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||||| ||||||||||||||||||||||||| ||||||||  |||||| || ||||| |||||||||| ||||| |||||    
T  33802033 tattggtcctctccgttagtttttaacatcaaatatctaaggtagaccatgattcaaggtggtccaccatataccttattaaa 33801951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 309 - 389
Target Start/End: Complemental strand, 14328788 - 14328708
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| ||||||||| |||||||| | |||||||||||||||||||  |||| |||| |||||||||||||||| |||||    
T  14328788 ttggtcctctccgttactttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaaa 14328708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 309 - 389
Target Start/End: Complemental strand, 14421798 - 14421718
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| ||||||||| |||||||| | |||||||||||||||||||  |||| |||| |||||||||||||||| |||||    
T  14421798 ttggtcctctccgttactttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaaa 14421718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 316 - 373
Target Start/End: Complemental strand, 13507178 - 13507121
Alignment:
Q  316 tctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccac 373  Q
    |||| |||||||||||||||||||||| ||||||||||||| ||||||||| ||||||    
T  13507178 tctctgttagtttttaacatcaaatgtttaaggtgaaccatatttaaaggtggtccac 13507121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 309 - 389
Target Start/End: Complemental strand, 293654 - 293574
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| ||||||||  |||||||| | |||||||||||||||||||  |||| |||| |||||||||||||||| |||||    
T  293654 ttggtcctctccgtttatttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaaa 293574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 251 - 330
Target Start/End: Original strand, 18773698 - 18773777
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagttttt 330  Q
    ||||||||| || |||| |||| || ||||||||||||||| |||  |||||||||| |||||| |||| ||||||||||    
T  18773698 gtcccctaattataaaatgtctcaatttggtcccttatgtcctctcgtgttaccttttttggtcctctctgttagttttt 18773777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 424 - 474
Target Start/End: Complemental strand, 18139387 - 18139337
Alignment:
Q  424 aaaagagaattgttggatcatttaaggtctattgtattttattgtaaacca 474  Q
    ||||||| ||||||||||||| || |||||||||||||||| ||| |||||    
T  18139387 aaaagaggattgttggatcatgtagggtctattgtattttactgtgaacca 18139337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 251 - 333
Target Start/End: Original strand, 19367761 - 19367843
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaac 333  Q
    |||||||||||| |||  |||| || ||||||||||||||||| |  |||||||||| |||||| | |||||||  |||||||    
T  19367761 gtcccctaactataaagtgtctcaatttggtcccttatgtcttttgttgttaccttttttggtcatatccgttacattttaac 19367843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 309 - 355
Target Start/End: Original strand, 31738465 - 31738511
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaacca 355  Q
    |||||| |||||||||||||||||| | |||||||||| ||||||||    
T  31738465 ttggtcctctccgttagtttttaaccttaaatgtctaatgtgaacca 31738511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 56; Significance: 8e-23; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 451 - 514
Target Start/End: Complemental strand, 56572 - 56509
Alignment:
Q  451 tctattgtattttattgtaaaccaccaacaccaaatattttcctcacctttcttcatcttcttc 514  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  56572 tctattgtattttattgtaaaccaccaacacctaatatttttctcacctttcttcatcttcttc 56509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 322 - 389
Target Start/End: Complemental strand, 56701 - 56634
Alignment:
Q  322 ttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    ||||||||||||||||||| |||||||  ||| |||||||||| | |||||||| ||||||| |||||    
T  56701 ttagtttttaacatcaaatatctaagggaaactatgtttaaagatggtccaccaaagaccttattaaa 56634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 251 - 377
Target Start/End: Complemental strand, 13276 - 13150
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtg 350  Q
    |||||||||||| |||| |||| || || ||||| ||  |||||||| ||||||| | |||||| | ||| |||| ||||||||||||||||||||||||    
T  13276 gtcccctaactataaaatgtctcaatttcgtcccataactcttcttccgttacctcttttggtcctatccattaggttttaacatcaaatgtctaaggtg 13177  T
Q  351 aaccatgtttaaaggtagtccaccata 377  Q
    |||||| ||||||| | ||||||||||    
T  13176 aaccatatttaaagatggtccaccata 13150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 249 - 330
Target Start/End: Original strand, 11748 - 11829
Alignment:
Q  249 tagtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagttttt 330  Q
    ||||||||||| || |||  || | || ||||||||||||||||||| | ||||||| | |||||| |||||||||||||||    
T  11748 tagtcccctaattataaagtgtttcaatttggtcccttatgtcttctccagttacctattttggtcctctccgttagttttt 11829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 316 - 377
Target Start/End: Original strand, 41017 - 41078
Alignment:
Q  316 tctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccata 377  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  41017 tctctgttagtttttaacatcaaatgtctaaggtgaaccatatttaaaggtggtccaccata 41078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 326 - 389
Target Start/End: Original strand, 7426760 - 7426823
Alignment:
Q  326 tttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    ||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||| |||||    
T  7426760 tttttaacatcaaatgtctaaggtgaatcatatttaaaggtggtccaccatagaccttattaaa 7426823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 251 - 378
Target Start/End: Original strand, 21387681 - 21387808
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtg 350  Q
    |||||||||||| |||| |||| || |||||||| ||  |||||| | ||||||| | |||||| | || |||||||||||||||||||  |||||||||    
T  21387681 gtcccctaactataaaatgtctcaatttggtcccataaatcttctgccgttacctcttttggtcctgtctgttagtttttaacatcaaaactctaaggtg 21387780  T
Q  351 aaccatgtttaaaggtagtccaccatag 378  Q
    || ||| ||||||||| || ||||||||    
T  21387781 aaacatatttaaaggtggttcaccatag 21387808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 309 - 389
Target Start/End: Original strand, 40058120 - 40058200
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| |||||||||||||||||  | |||||||||||||||||||  |||| | ||||||||||||||||||| |||||    
T  40058120 ttggtcatctccgttagtttttaatcttaaatgtctaaggtgaaccaactttataagtagtccaccatagaccttattaaa 40058200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 424 - 514
Target Start/End: Original strand, 7426856 - 7426946
Alignment:
Q  424 aaaagagaattgttggatcatttaaggtctattgtattttattgtaaaccaccaacaccaaatattttcctcacctttcttcatcttcttc 514  Q
    |||||||  ||||||||| || || |||||| ||||||||||||||||| |||| |||| |||||||| |||||||||||| ||| |||||    
T  7426856 aaaagaggtttgttggatgatgtagggtctactgtattttattgtaaactaccatcacctaatatttttctcacctttctttatcatcttc 7426946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 299 - 381
Target Start/End: Original strand, 18693790 - 18693872
Alignment:
Q  299 gttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagacc 381  Q
    ||||||| | |||||| |||| |||||||||||||||||||  ||||||||||||||| | ||||||| || |||||||||||    
T  18693790 gttacctcttttggtcctctctgttagtttttaacatcaaaactctaaggtgaaccatatataaaggtggttcaccatagacc 18693872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 316 - 389
Target Start/End: Original strand, 5383051 - 5383124
Alignment:
Q  316 tctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||||||||||||||| | |||||||||||||||| ||  |||| |||| |||||||||||||||| |||||    
T  5383051 tctccgttagtttttaaccttaaatgtctaaggtgaatcaactttataggtggtccaccatagaccttattaaa 5383124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 251 - 355
Target Start/End: Complemental strand, 41906470 - 41906366
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtg 350  Q
    ||||| |||||||||||||||| ||||||| ||||||| | |||| | ||||||| | ||||||  || ||||||||||||||   |||| |||||||||    
T  41906470 gtcccttaactaaaaaacgtctcaaattggccccttatatattctgccgttacctattttggtccacttcgttagtttttaaccataaatatctaaggtg 41906371  T
Q  351 aacca 355  Q
    |||||    
T  41906370 aacca 41906366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 251 - 330
Target Start/End: Original strand, 41905219 - 41905298
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagttttt 330  Q
    |||||||||||| |||| |||||||| |||||||||||||||||| | || |||| | ||| || |||||||||||||||    
T  41905219 gtcccctaactataaaatgtcttaaactggtcccttatgtcttctaccgtcacctcttttgatcctctccgttagttttt 41905298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 316 - 389
Target Start/End: Complemental strand, 2167522 - 2167449
Alignment:
Q  316 tctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||| ||||||||||||| | |||||||||||||||||||  |||| || | |||||||||||||||| |||||    
T  2167522 tctctgttagtttttaaccttaaatgtctaaggtgaaccaactttatagatggtccaccatagaccttattaaa 2167449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 12829614 - 12829666
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttac 303  Q
    ||||| ||||||| |||||||| ||||||||||||||||| ||||||||||||    
T  12829614 gtcccttaactaagaaacgtctcaaattggtcccttatgtattcttctgttac 12829666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 12861593 - 12861645
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttac 303  Q
    ||||| ||||||| |||||||| ||||||||||||||||| ||||||||||||    
T  12861593 gtcccttaactaagaaacgtctcaaattggtcccttatgtattcttctgttac 12861645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 251 - 324
Target Start/End: Original strand, 15509239 - 15509312
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgtta 324  Q
    |||||||||||| |||  |||| || ||||||||||||||||||| | ||||||| | |||||| |||||||||    
T  15509239 gtcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctattttggtcctctccgtta 15509312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 252 - 328
Target Start/End: Complemental strand, 15510334 - 15510258
Alignment:
Q  252 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagttt 328  Q
    ||||||||||| |||  |||| || ||||||||||||||||||| | ||||||| | |||||| |||| ||||||||    
T  15510334 tcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcctctctgttagttt 15510258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 309 - 389
Target Start/End: Complemental strand, 19525302 - 19525222
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| |||||||| ||||||||| | |||| |||| |||||||||  |||| | || |||||||||||||||| |||||    
T  19525302 ttggtcctctccgtttgtttttaaccttaaatttctatggtgaaccaactttatatgtggtccaccatagaccttattaaa 19525222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 251 - 333
Target Start/End: Complemental strand, 4568046 - 4567964
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaac 333  Q
    |||||||||||| |||  |||| || ||||||||||||||||||| |  |||||| | |||||| |||||||||  |||||||    
T  4568046 gtcccctaactataaagtgtctcaatttggtcccttatgtcttctgcctttacctattttggtcatctccgttacattttaac 4567964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 251 - 333
Target Start/End: Original strand, 14210187 - 14210269
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaac 333  Q
    ||||| |||||||||||||||| ||||||||||||||    |||| | ||||||| | ||| || |||| |||||||||||||    
T  14210187 gtcccataactaaaaaacgtctcaaattggtcccttagacattctgccgttacctattttgatcctctctgttagtttttaac 14210269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 252 - 333
Target Start/End: Original strand, 19825919 - 19826000
Alignment:
Q  252 tcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagtttttaac 333  Q
    ||||||||||||||||||||| ||| |||||| |||| | |||||  ||| ||| | ||||||   ||||||||||||||||    
T  19825919 tcccctaactaaaaaacgtctcaaactggtcctttatatattctttcgttgcctattttggtcaaatccgttagtttttaac 19826000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 300 - 381
Target Start/End: Complemental strand, 39924 - 39843
Alignment:
Q  300 ttacctttattggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagacc 381  Q
    |||||| | |||||| |||| ||||||||||||||||||| |||||||||||| ||| ||||||||| || |||||| ||||    
T  39924 ttacctcttttggtcctctctgttagtttttaacatcaaaagtctaaggtgaatcatatttaaaggtggttcaccatggacc 39843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 309 - 383
Target Start/End: Complemental strand, 77195 - 77119
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgt--ctaaggtgaaccatgtttaaaggtagtccaccatagacctt 383  Q
    |||||||||||||||| | ||| |||||||||||  |||||||||||||| ||||||||| ||||||||| ||||||    
T  77195 ttggtcttctccgttaatgtttgacatcaaatgtgtctaaggtgaaccatatttaaaggtggtccaccattgacctt 77119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 316 - 389
Target Start/End: Original strand, 16054 - 16127
Alignment:
Q  316 tctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||||||||||||||| | ||||||||||| |||||||  |||| || | |||||||||||||||| |||||    
T  16054 tctccgttagtttttaaccttaaatgtctaagatgaaccaactttatagatggtccaccatagaccttattaaa 16127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 458532 - 458455
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagttt 328  Q
    ||||||||| || |||  ||||||| ||||||||||||||||||| |||||| || | |||||| |||||||||||||    
T  458532 gtcccctaattataaagtgtcttaatttggtcccttatgtcttctgctgttatctcttttggtcctctccgttagttt 458455  T

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Target: scaffold1974 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1974
Description:

Target: scaffold1974; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 309 - 389
Target Start/End: Complemental strand, 642 - 562
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| |||||||||||||||||||| |||  ||||||||||||||| ||||||| | || |||| |||| ||| |||||    
T  642 ttggtcatctccgttagtttttaacataaaaaatctaaggtgaaccatatttaaagatggttcaccgtagatcttattaaa 562  T

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Target: scaffold1878 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1878
Description:

Target: scaffold1878; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 309 - 389
Target Start/End: Original strand, 632 - 712
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| |||||||||||||||||||| |||  ||||||||||||||| ||||||| | || |||| |||| ||| |||||    
T  632 ttggtcatctccgttagtttttaacataaaaaatctaaggtgaaccatatttaaagatggttcaccgtagatcttattaaa 712  T

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Target: scaffold0290 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 309 - 389
Target Start/End: Complemental strand, 9492 - 9412
Alignment:
Q  309 ttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtagtccaccatagaccttgttaaa 389  Q
    |||||| |||||||||||||||||||| |||  ||||||||||||||| ||||||| | || |||| |||| ||| |||||    
T  9492 ttggtcatctccgttagtttttaacataaaaaatctaaggtgaaccatatttaaagatggttcaccgtagatcttattaaa 9412  T

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Target: scaffold0046 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 277 - 330
Target Start/End: Complemental strand, 24861 - 24808
Alignment:
Q  277 ttggtcccttatgtcttcttctgttacctttattggtcttctccgttagttttt 330  Q
    |||||||||||||||||| || ||||||| | |||||| |||||||||||||||    
T  24861 ttggtcccttatgtcttcctccgttacctattttggtcatctccgttagttttt 24808  T

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Target: scaffold0177 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 1799 - 1876
Alignment:
Q  251 gtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttctgttacctttattggtcttctccgttagttt 328  Q
    ||||||||| || |||  |||| || |||||||||||||||||||   ||||||| | |||||| |||||||||||||    
T  1799 gtcccctaattataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgttagttt 1876  T

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