View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20047_high_13 (Length: 301)
Name: NF20047_high_13
Description: NF20047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20047_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 38532452 - 38532567
Alignment:
| Q |
18 |
attcccatatccatcatttgacaaaatcaaaccaccttcatccccttcccttacctttcaagccaacaagtaaattccccagtccctataccaacccaaa |
117 |
Q |
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| T |
38532452 |
attcccatatccatcatttgacaaaatcaaaccaccttcatccccttcccttacctttcaagctaacaagtaaattccccagtccctataccaacccaaa |
38532551 |
T |
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| Q |
118 |
aaatatcataacatgc |
133 |
Q |
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|||||||||||||||| |
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| T |
38532552 |
aaatatcataacatgc |
38532567 |
T |
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Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 181 - 289
Target Start/End: Original strand, 38532618 - 38532726
Alignment:
| Q |
181 |
tgaagaaccgttattattatcctctccaacaaagaaaactattcataggattaacaacaattggattaatagcagctgcattgttcatagccacagcgat |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38532618 |
tgaagaaccgttattattatcctctccaacaaagaaaactattcataggattaacaacaattggattaatagtagctgcattgttcatagccacagcgat |
38532717 |
T |
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| Q |
281 |
cacaacctt |
289 |
Q |
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| T |
38532718 |
cacaacctt |
38532726 |
T |
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