View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20047_high_6 (Length: 382)
Name: NF20047_high_6
Description: NF20047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20047_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 304
Target Start/End: Original strand, 17269072 - 17269365
Alignment:
| Q |
12 |
attatactagttccaagatgaaattttcatattaagttcattaacatgggctattaacaaccacatgttaacatttccttaaatataaatggggattatc |
111 |
Q |
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| T |
17269072 |
attatactagttccaagatgaaattttcatattaagttcattaacatgggccattaacaaccacatgttagcatttccttaaatataaatgggaattatc |
17269171 |
T |
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| Q |
112 |
attatggaagagataaacacaatatcagtaggga-tcatgtcattaaatgagtctcaatatgattaattgttttaagttttattttatctttatctcttt |
210 |
Q |
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| T |
17269172 |
attatggaagagataaacacaatatcagtagggagtcatgtcattaaatgagtctcactatcattaattattttaagttgtattctatctttatctctat |
17269271 |
T |
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| Q |
211 |
aaatagataaaatggagtaaaacctaaatggagaagattctacctcgtttttatgagtgattacgatgatttattttgtttacacggctgattt |
304 |
Q |
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| T |
17269272 |
aaatggaaaaaatggagtaaaacttaaatgaagaagattctacctcgtttttatgagtgattacgatgatttattttgtttacaaggctgattt |
17269365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 288 - 382
Target Start/End: Original strand, 17269377 - 17269471
Alignment:
| Q |
288 |
gtttacacggctgatttaaaaagcaatttgaggcctcatttaatcaaagctccatttagtccatttaaggcatgaatgcatgaaatgtggtaaaa |
382 |
Q |
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| T |
17269377 |
gtttacaaggctgatttaaaaagcaatttgaggcctcatttagtcaatgcttcatttagtccatttaaggtatgaatgcatgaaatgtggtaaaa |
17269471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 254 - 315
Target Start/End: Original strand, 17276087 - 17276148
Alignment:
| Q |
254 |
ctcgtttttatgagtgattacgatgatttattttgtttacacggctgatttaaaaagcaatt |
315 |
Q |
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| T |
17276087 |
ctcgtttttatgggtgattatgatgattgattttgtttacaaggatgatttaaaaagcaatt |
17276148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 527249 - 527294
Alignment:
| Q |
181 |
ttttaagttttattttatctttatctctttaaatagataaaatggag |
227 |
Q |
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| T |
527249 |
ttttaaattttattt-atttttatctctttaaatagataaaatggag |
527294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 1193734 - 1193806
Alignment:
| Q |
146 |
tcatgtcattaaatgagtctcaatatgattaattgtttt-aagttttattttatctttatctctttaaataga |
217 |
Q |
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| T |
1193734 |
tcatgtcattaaatgagtctaaccacgattaattattttaaatttttattgtgtctttatctctctaaataga |
1193806 |
T |
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