View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20047_low_11 (Length: 335)
Name: NF20047_low_11
Description: NF20047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20047_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 11 - 318
Target Start/End: Original strand, 7036713 - 7037020
Alignment:
| Q |
11 |
ttattctgaaataatctccaagctaagcacgcaacttttaacgggattgatttatgccaagccttcgaccatgattgattaggaacacttatcaatccct |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7036713 |
ttattctgaaataatctccaagctaagcacacaacttttaacgggattgatttatgccaagccttcgaccatgattgattaggaacacttatcaatccct |
7036812 |
T |
|
| Q |
111 |
ccatcaacattttatacgtttcttttaccgaatacatatttcgtgtgtcctgaacgtgtatatatattgcatatatcgttccaccataccgaattgcctc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7036813 |
ccatcaacattttatacgtttcttttaccgaatacatatttcgtgtgtcttgaacgtgtatatatattgcatatatcgttccaccataccgaattgcctc |
7036912 |
T |
|
| Q |
211 |
tccaaccctctctaaacaccccatctctttctcaccatatctatttgatagaacactgtaccaatgccaaaaaccctcatttcttaatttcaactttcat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7036913 |
tccaaccctctctaaacaccccatctctttctcaccatatctatttgatagaacactgtaccaatgccaaaaaccctcatttcttaatttcaactttcat |
7037012 |
T |
|
| Q |
311 |
tttcctag |
318 |
Q |
| |
|
|||||||| |
|
|
| T |
7037013 |
tttcctag |
7037020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 24828245 - 24828175
Alignment:
| Q |
12 |
tattctgaaataatctccaagctaagcacgcaacttttaacgggattgatttatgccaagccttcgaccat |
82 |
Q |
| |
|
|||| |||||||||||||| |||| || | |||||||||||||| |||||||||||||| || |||||| |
|
|
| T |
24828245 |
tattttgaaataatctccacactaaacatgaaacttttaacgggaccgatttatgccaagcttttgaccat |
24828175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 27119057 - 27119125
Alignment:
| Q |
12 |
tattctgaaataatctccaagctaagcacgcaacttttaacgggattgatttatgccaagccttcgacc |
80 |
Q |
| |
|
|||| ||||||| | ||| | ||||||| | |||||||||||| | ||||||||| ||||||||||||| |
|
|
| T |
27119057 |
tattttgaaatagtttcctaactaagcatgaaacttttaacggcactgatttatgtcaagccttcgacc |
27119125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 18943244 - 18943316
Alignment:
| Q |
12 |
tattctgaaataatctccaagctaagcacgcaacttttaacgggattgatttatgccaagccttcgaccatga |
84 |
Q |
| |
|
|||| ||||| | ||||||||| || |||| ||||||| |||| | || ||||||||||||| |||||||||| |
|
|
| T |
18943244 |
tattttgaaacactctccaagcaaaacacgaaacttttgacggaactgctttatgccaagccctcgaccatga |
18943316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University