View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20047_low_13 (Length: 323)

Name: NF20047_low_13
Description: NF20047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20047_low_13
NF20047_low_13
[»] chr7 (20 HSPs)
chr7 (16-323)||(38405745-38406055)
chr7 (282-323)||(46675013-46675054)
chr7 (285-323)||(4857200-4857238)
chr7 (282-323)||(43006381-43006422)
chr7 (283-323)||(35128241-35128281)
chr7 (283-323)||(43930316-43930356)
chr7 (284-323)||(25155015-25155054)
chr7 (283-322)||(32141764-32141803)
chr7 (282-323)||(4858423-4858464)
chr7 (282-323)||(13446737-13446778)
chr7 (282-323)||(19278349-19278390)
chr7 (282-323)||(22744742-22744783)
chr7 (282-323)||(33458306-33458347)
chr7 (282-323)||(40926598-40926639)
chr7 (282-323)||(44114734-44114775)
chr7 (283-323)||(18802468-18802508)
chr7 (283-323)||(19279691-19279731)
chr7 (282-322)||(28326469-28326509)
chr7 (283-323)||(38408353-38408393)
chr7 (282-322)||(41514994-41515033)
[»] chr8 (22 HSPs)
chr8 (17-64)||(27574170-27574217)
chr8 (282-316)||(43278007-43278041)
chr8 (282-323)||(16363891-16363932)
chr8 (282-323)||(31623902-31623943)
chr8 (282-323)||(36070174-36070215)
chr8 (282-323)||(36940112-36940153)
chr8 (283-323)||(117045-117085)
chr8 (282-322)||(8395020-8395060)
chr8 (288-323)||(45541547-45541582)
chr8 (282-323)||(3237719-3237760)
chr8 (282-323)||(10052100-10052141)
chr8 (282-323)||(10053823-10053864)
chr8 (282-315)||(11081119-11081152)
chr8 (282-323)||(31625463-31625503)
chr8 (282-323)||(35943903-35943944)
chr8 (282-323)||(37323344-37323385)
chr8 (282-323)||(37474115-37474156)
chr8 (282-323)||(38591086-38591127)
chr8 (282-315)||(39323783-39323816)
chr8 (282-323)||(43386781-43386822)
chr8 (275-323)||(24068319-24068367)
chr8 (282-322)||(36756060-36756100)
[»] scaffold0013 (1 HSPs)
scaffold0013 (282-323)||(96894-96935)
[»] chr5 (19 HSPs)
chr5 (282-323)||(19523979-19524020)
chr5 (282-323)||(1273419-1273460)
chr5 (282-323)||(5382938-5382979)
chr5 (282-323)||(18677972-18678013)
chr5 (282-323)||(19525367-19525408)
chr5 (282-323)||(19825870-19825911)
chr5 (282-323)||(40059407-40059448)
chr5 (282-323)||(41905171-41905212)
chr5 (283-323)||(12933748-12933788)
chr5 (284-322)||(33362647-33362685)
chr5 (285-323)||(40058017-40058055)
chr5 (282-323)||(328233-328274)
chr5 (282-323)||(6629727-6629768)
chr5 (282-323)||(10084623-10084664)
chr5 (282-323)||(12936181-12936222)
chr5 (283-323)||(1273086-1273126)
chr5 (283-323)||(12947909-12947949)
chr5 (282-322)||(24805287-24805327)
chr5 (19-75)||(39766302-39766358)
[»] chr3 (19 HSPs)
chr3 (282-323)||(10987732-10987773)
chr3 (273-323)||(51825700-51825750)
chr3 (282-323)||(8371216-8371257)
chr3 (282-323)||(8372695-8372736)
chr3 (282-323)||(17350181-17350222)
chr3 (282-323)||(41387512-41387553)
chr3 (282-323)||(49122081-49122122)
chr3 (284-323)||(39133015-39133054)
chr3 (282-316)||(43103382-43103416)
chr3 (282-323)||(17345307-17345348)
chr3 (282-315)||(32980539-32980572)
chr3 (282-323)||(41386126-41386167)
chr3 (282-323)||(42632702-42632743)
chr3 (282-323)||(42633965-42634006)
chr3 (281-322)||(53808313-53808354)
chr3 (282-323)||(54654045-54654086)
chr3 (282-322)||(26798986-26799026)
chr3 (291-323)||(43101899-43101931)
chr3 (282-322)||(48254967-48255007)
[»] chr1 (16 HSPs)
chr1 (282-323)||(33793775-33793816)
chr1 (282-323)||(25785964-25786005)
chr1 (282-323)||(25787243-25787284)
chr1 (282-323)||(47136766-47136807)
chr1 (283-323)||(13929292-13929332)
chr1 (284-323)||(2973087-2973126)
chr1 (284-323)||(49139799-49139838)
chr1 (283-322)||(52741485-52741524)
chr1 (286-323)||(13930754-13930791)
chr1 (282-323)||(14071282-14071323)
chr1 (282-323)||(21276990-21277031)
chr1 (282-323)||(44977217-44977258)
chr1 (282-323)||(44979431-44979472)
chr1 (282-323)||(47411527-47411568)
chr1 (295-323)||(13641266-13641294)
chr1 (282-322)||(16217436-16217476)
[»] chr4 (17 HSPs)
chr4 (283-323)||(55953931-55953971)
chr4 (284-322)||(1273512-1273550)
chr4 (282-323)||(37560378-37560419)
chr4 (282-323)||(39590937-39590978)
chr4 (278-323)||(26376321-26376366)
chr4 (282-323)||(29686252-29686293)
chr4 (282-323)||(29688053-29688094)
chr4 (282-323)||(31711088-31711129)
chr4 (282-323)||(31712568-31712609)
chr4 (282-323)||(33376214-33376255)
chr4 (282-323)||(33377443-33377484)
chr4 (282-323)||(37558994-37559035)
chr4 (282-315)||(39592376-39592409)
chr4 (282-323)||(44305058-44305099)
chr4 (282-315)||(49923883-49923916)
chr4 (282-315)||(54374039-54374072)
chr4 (282-322)||(46796106-46796146)
[»] chr2 (11 HSPs)
chr2 (282-322)||(21010574-21010614)
chr2 (278-323)||(35799504-35799549)
chr2 (282-323)||(37867752-37867793)
chr2 (282-323)||(4829461-4829502)
chr2 (282-323)||(7038411-7038452)
chr2 (282-323)||(23177669-23177710)
chr2 (282-323)||(23588926-23588967)
chr2 (282-323)||(42029037-42029078)
chr2 (283-323)||(4701566-4701606)
chr2 (282-322)||(11575535-11575575)
chr2 (283-323)||(28109948-28109988)
[»] chr6 (6 HSPs)
chr6 (281-323)||(33802096-33802138)
chr6 (282-323)||(5311275-5311316)
chr6 (282-323)||(33807685-33807726)
chr6 (282-323)||(31738359-31738400)
chr6 (282-323)||(34084211-34084252)
chr6 (295-323)||(22299982-22300010)
[»] scaffold2127 (1 HSPs)
scaffold2127 (282-323)||(594-635)
[»] scaffold0290 (1 HSPs)
scaffold0290 (282-323)||(8375-8416)
[»] scaffold0084 (1 HSPs)
scaffold0084 (286-323)||(13283-13320)
[»] scaffold0046 (1 HSPs)
scaffold0046 (282-323)||(23402-23443)
[»] scaffold0034 (1 HSPs)
scaffold0034 (282-315)||(98045-98078)
[»] scaffold0024 (1 HSPs)
scaffold0024 (282-323)||(73065-73106)
[»] scaffold0051 (1 HSPs)
scaffold0051 (283-323)||(22125-22165)


Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 323
Target Start/End: Original strand, 38405745 - 38406055
Alignment:
Q  16 gtacatactatcaaggtgcttttggggcaatgagatgtgacactgaaaaaacatttttattctgctaatcgaagacaagcgtaatatgggggaagtctta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||    
T  38405745 gtacatactatcaaggtgcttttggggcaatgagatgtgacactgaaaaaacatttttatcttgctaattgaagacaagcgtaatatgggggaagtctta 38405844  T
Q  116 agcagctcctgaggaagatatttaggagttcacactagagaacatatttttatagagacatcaaatcttgaggttaaatgtatatagattttactattgg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38405845 agcagctcctgaggaagatatttaggagttcacactagagaacatatttttatagagacatcaaatcttgaggttaaatgtatatagattttactattgg 38405944  T
Q  216 ctttgtactattaagattgaatgtacttatcttattaattgagaattaaatttgatattttca---aatgcttaatatatcatttgatcccttaacttat 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || |||||||| || ||||| ||| |||| ||||    
T  38405945 ctttgtactattaagattgaatgtacttatcttattaattgagaattaaatttgatattttcaaacaaggcttaatacattatttggtcctttaatttat 38406044  T
Q  313 ttttggttttc 323  Q
    |||||||||||    
T  38406045 ttttggttttc 38406055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 46675054 - 46675013
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  46675054 gcttaatacatcatttgatcccttaacttatttttggttttc 46675013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 323
Target Start/End: Original strand, 4857200 - 4857238
Alignment:
Q  285 taatatatcatttgatcccttaacttatttttggttttc 323  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  4857200 taatacatcatttgatcccttaacttatttttggttttc 4857238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 43006381 - 43006422
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  43006381 gcttaatacatcatttggtcccttaacttatttttggttttc 43006422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 35128281 - 35128241
Alignment:
Q  283 cttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    ||||||| |||||||| ||||||||||||||||||||||||    
T  35128281 cttaatacatcatttggtcccttaacttatttttggttttc 35128241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 43930316 - 43930356
Alignment:
Q  283 cttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||||||||||| |||||||||||||||||| |||||    
T  43930316 cttaatatatcatttggtcccttaacttatttttgattttc 43930356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 323
Target Start/End: Complemental strand, 25155054 - 25155015
Alignment:
Q  284 ttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  25155054 ttaatacatcatttggtcccttaacttatttttggttttc 25155015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 283 - 322
Target Start/End: Original strand, 32141764 - 32141803
Alignment:
Q  283 cttaatatatcatttgatcccttaacttatttttggtttt 322  Q
    ||||||| ||||||||||||||||| ||||||||||||||    
T  32141764 cttaatacatcatttgatcccttaatttatttttggtttt 32141803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 4858464 - 4858423
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| ||||||||||||||||| ||||||    
T  4858464 gcttaatacatcatttggtcccttaacttatttttagttttc 4858423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 13446778 - 13446737
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| || |||||||||||||||||||||    
T  13446778 gcttaatacatcatttggtcacttaacttatttttggttttc 13446737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 19278349 - 19278390
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| ||||||||||||||||||| ||||    
T  19278349 gcttaatacatcatttggtcccttaacttatttttggatttc 19278390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 22744742 - 22744783
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| |||||||||||||||||| |||||    
T  22744742 gcttaatacatcatttggtcccttaacttatttttgattttc 22744783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 33458306 - 33458347
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| ||| ||||||||||||||||||||    
T  33458306 gcttaatacatcatttggtcctttaacttatttttggttttc 33458347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 40926639 - 40926598
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||  ||||||||||||||||||||||||    
T  40926639 gcttaatacatcatttagtcccttaacttatttttggttttc 40926598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 44114775 - 44114734
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| ||||||||||||||||| ||||||    
T  44114775 gcttaatacatcatttggtcccttaacttatttttagttttc 44114734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 18802508 - 18802468
Alignment:
Q  283 cttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    ||||||| |||||||| ||||||||||||||||| ||||||    
T  18802508 cttaatacatcatttggtcccttaacttattttttgttttc 18802468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 19279731 - 19279691
Alignment:
Q  283 cttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    ||||||| ||| |||| ||||||||||||||||||||||||    
T  19279731 cttaatacatcgtttggtcccttaacttatttttggttttc 19279691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 282 - 322
Target Start/End: Complemental strand, 28326509 - 28326469
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggtttt 322  Q
    |||||||| || |||||||||||||| ||||||||||||||    
T  28326509 gcttaatacattatttgatcccttaatttatttttggtttt 28326469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 38408393 - 38408353
Alignment:
Q  283 cttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||||||||||| |||||||| ||||||||| |||||    
T  38408393 cttaatatatcatttggtcccttaatttatttttgattttc 38408353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 282 - 322
Target Start/End: Original strand, 41514994 - 41515033
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggtttt 322  Q
    ||||||||||||||||| |||||||| ||||||||||||||    
T  41514994 gcttaatatatcatttg-tcccttaatttatttttggtttt 41515033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 27574217 - 27574170
Alignment:
Q  17 tacatactatcaaggtgcttttggggcaatgagatgtgacactgaaaa 64  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||    
T  27574217 tacatactatcaaggtgtttttggggcaatgagaggtgacactgaaaa 27574170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 43278041 - 43278007
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttattttt 316  Q
    |||||||||||||||||||||||||||||||||||    
T  43278041 gcttaatatatcatttgatcccttaacttattttt 43278007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 16363932 - 16363891
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    ||||||||||| ||||| ||||||||||||||||||||||||    
T  16363932 gcttaatatataatttggtcccttaacttatttttggttttc 16363891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 31623902 - 31623943
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  31623902 gcttaatacatcatttggtcccttaacttatttttggttttc 31623943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 36070174 - 36070215
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| ||||||||||||||||| |||||||||||||||    
T  36070174 gcttaatacatcatttgatcccttaatttatttttggttttc 36070215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 36940153 - 36940112
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  36940153 gcttaatacatcatttggtcccttaacttatttttggttttc 36940112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 117045 - 117085
Alignment:
Q  283 cttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    ||||||| ||| |||||||||||||||||||||||||||||    
T  117045 cttaatacatcgtttgatcccttaacttatttttggttttc 117085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 322
Target Start/End: Original strand, 8395020 - 8395060
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggtttt 322  Q
    ||||||||||||||||| || ||||||||||||||||||||    
T  8395020 gcttaatatatcatttggtctcttaacttatttttggtttt 8395060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 288 - 323
Target Start/End: Original strand, 45541547 - 45541582
Alignment:
Q  288 tatatcatttgatcccttaacttatttttggttttc 323  Q
    ||||||||||||||||||||||||||||||| ||||    
T  45541547 tatatcatttgatcccttaacttatttttggatttc 45541582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 3237760 - 3237719
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| ||||||||||||||||||| ||||    
T  3237760 gcttaatacatcatttggtcccttaacttatttttggatttc 3237719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 10052100 - 10052141
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    ||||||||||||||||| |||||||||||||| ||| |||||    
T  10052100 gcttaatatatcatttggtcccttaacttattcttgattttc 10052141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 10053864 - 10053823
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||  ||||||||||||||||||||||||    
T  10053864 gcttaatacatcatttagtcccttaacttatttttggttttc 10053823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 315
Target Start/End: Complemental strand, 11081152 - 11081119
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttt 315  Q
    |||||||| |||||||||||||||||||||||||    
T  11081152 gcttaatacatcatttgatcccttaacttatttt 11081119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 31625503 - 31625463
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||||||| ||||||||||||||||||||    
T  31625503 gcttaatacatcatttgatcc-ttaacttatttttggttttc 31625463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 35943903 - 35943944
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| ||| |||| ||||||||||||||||||||||||    
T  35943903 gcttaatacatcgtttggtcccttaacttatttttggttttc 35943944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 37323344 - 37323385
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| |||||||| |||||||||||||||    
T  37323344 gcttaatacatcatttggtcccttaatttatttttggttttc 37323385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 37474156 - 37474115
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| ||||||| |||||||||||||||| ||||||||    
T  37474156 gcttaatacatcatttcatcccttaacttatttatggttttc 37474115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 38591127 - 38591086
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| |||||||||||||||||| |||||    
T  38591127 gcttaatacatcatttggtcccttaacttatttttgattttc 38591086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 315
Target Start/End: Original strand, 39323783 - 39323816
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttt 315  Q
    |||||||||||||||| |||||||||||||||||    
T  39323783 gcttaatatatcatttaatcccttaacttatttt 39323816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 43386822 - 43386781
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  43386822 gcttaatacatcatatggtcccttaacttatttttggttttc 43386781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 24068319 - 24068367
Alignment:
Q  275 ttcaaatgcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||| |||||||| ||  |||| ||||||||||||||||||||||||    
T  24068319 ttcaaaggcttaatacatgctttggtcccttaacttatttttggttttc 24068367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 282 - 322
Target Start/End: Original strand, 36756060 - 36756100
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggtttt 322  Q
    |||||||| |||||||| ||||||||||||||||| |||||    
T  36756060 gcttaatacatcatttggtcccttaacttatttttagtttt 36756100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 96935 - 96894
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  96935 gcttaatacatcatttgatcccttaacttatttttggttttc 96894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 19523979 - 19524020
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  19523979 gcttaatatatcatttggtcccttaacttatttttggttttc 19524020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 1273460 - 1273419
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  1273460 gcttaatatatcgtttggtcccttaacttatttttggttttc 1273419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 5382938 - 5382979
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  5382938 gcttaatacatcatttggtcccttaacttatttttggttttc 5382979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 18677972 - 18678013
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  18677972 gcttaatacatcatttggtcccttaacttatttttggttttc 18678013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 19525408 - 19525367
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  19525408 gcttaatacatcatttggtcccttaacttatttttggttttc 19525367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 19825870 - 19825911
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  19825870 gcttaatacatcatttggtcccttaacttatttttggttttc 19825911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 40059448 - 40059407
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    ||||||||||| ||||| ||||||||||||||||||||||||    
T  40059448 gcttaatatataatttggtcccttaacttatttttggttttc 40059407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 41905171 - 41905212
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  41905171 gcttaatacatcatttggtcccttaacttatttttggttttc 41905212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 12933748 - 12933788
Alignment:
Q  283 cttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  12933748 cttaatatatcatttagtcccttaacttatttttggttttc 12933788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 322
Target Start/End: Complemental strand, 33362685 - 33362647
Alignment:
Q  284 ttaatatatcatttgatcccttaacttatttttggtttt 322  Q
    ||||||||||||||| ||||||||||||||||| |||||    
T  33362685 ttaatatatcatttggtcccttaacttattttttgtttt 33362647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 323
Target Start/End: Original strand, 40058017 - 40058055
Alignment:
Q  285 taatatatcatttgatcccttaacttatttttggttttc 323  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  40058017 taatatatcgtttgatctcttaacttatttttggttttc 40058055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 328274 - 328233
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| ||||||||||| |||||||||||||| ||||||    
T  328274 gcttaatacatcatttgatcacttaacttattttttgttttc 328233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 6629727 - 6629768
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| ||||||||||||||| ||||||||    
T  6629727 gcttaatacatcatttggtcccttaacttatttgtggttttc 6629768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 10084623 - 10084664
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| |||||||| |||||||||||||||    
T  10084623 gcttaatacatcatttgttcccttaatttatttttggttttc 10084664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 12936222 - 12936181
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||  ||||||||||||||||||||||||    
T  12936222 gcttaatacatcatttagtcccttaacttatttttggttttc 12936181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 1273086 - 1273126
Alignment:
Q  283 cttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    ||||||| |||||||| |||||||| |||||||||||||||    
T  1273086 cttaatacatcatttggtcccttaatttatttttggttttc 1273126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 12947909 - 12947949
Alignment:
Q  283 cttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||||||||||  |||||||||||||||||| |||||    
T  12947909 cttaatatatcatttagtcccttaacttatttttgattttc 12947949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 282 - 322
Target Start/End: Original strand, 24805287 - 24805327
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggtttt 322  Q
    |||||||| |||||||| || ||||||||||||||||||||    
T  24805287 gcttaatacatcatttggtctcttaacttatttttggtttt 24805327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 39766358 - 39766302
Alignment:
Q  19 catactatcaaggtgcttttggggcaatgagatgtgacactgaaaaaacatttttat 75  Q
    |||||||||||||| || ||||||||| ||||  ||||| |||||||||||| ||||    
T  39766358 catactatcaaggttctgttggggcaacgagagctgacattgaaaaaacattattat 39766302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 10987773 - 10987732
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  10987773 gcttaatacatcatttgatcccttaacttatttttggttttc 10987732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 323
Target Start/End: Complemental strand, 51825750 - 51825700
Alignment:
Q  273 ttttcaaatgcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||| ||| ||||||||||||||||| ||||||||||||||||||| ||||    
T  51825750 tttttaaaggcttaatatatcatttggtcccttaacttatttttggatttc 51825700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 8371216 - 8371257
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||||||||||||||||||||| ||||||    
T  8371216 gcttaatacatcatttgatcccttaacttattttttgttttc 8371257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 8372736 - 8372695
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  8372736 gcttaatatatcgtttggtcccttaacttatttttggttttc 8372695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 17350222 - 17350181
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  17350222 gcttaatacatcatttggtcccttaacttatttttggttttc 17350181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 41387553 - 41387512
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  41387553 gcttaatacatcatttggtcccttaacttatttttggttttc 41387512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 49122122 - 49122081
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    ||||||||||||||||| ||| ||||||||||||||||||||    
T  49122122 gcttaatatatcatttggtcctttaacttatttttggttttc 49122081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 323
Target Start/End: Original strand, 39133015 - 39133054
Alignment:
Q  284 ttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  39133015 ttaatacatcatttgatctcttaacttatttttggttttc 39133054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 43103416 - 43103382
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttattttt 316  Q
    ||||||||||| |||||||||||||||||||||||    
T  43103416 gcttaatatattatttgatcccttaacttattttt 43103382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 17345307 - 17345348
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| || ||||| ||||||||||||||||||||||||    
T  17345307 gcttaatacattatttggtcccttaacttatttttggttttc 17345348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 315
Target Start/End: Complemental strand, 32980572 - 32980539
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttt 315  Q
    ||||||||||||||||||||| ||||||||||||    
T  32980572 gcttaatatatcatttgatccattaacttatttt 32980539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 41386126 - 41386167
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| ||| |||| ||||||||||||||||||||||||    
T  41386126 gcttaatacatcgtttggtcccttaacttatttttggttttc 41386167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 42632702 - 42632743
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| |||||||||||| |||||||||||    
T  42632702 gcttaatacatcatttggtcccttaacttacttttggttttc 42632743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 42634006 - 42633965
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| |||||||||||||||||| |||||    
T  42634006 gcttaatacatcatttggtcccttaacttatttttgattttc 42633965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 53808313 - 53808354
Alignment:
Q  281 tgcttaatatatcatttgatcccttaacttatttttggtttt 322  Q
    ||||||||| |||||||| |||||||||||||||| ||||||    
T  53808313 tgcttaatacatcatttggtcccttaacttattttcggtttt 53808354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 54654086 - 54654045
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| ||||||||||||||||||| ||||    
T  54654086 gcttaatacatcatttggtcccttaacttatttttggatttc 54654045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 282 - 322
Target Start/End: Complemental strand, 26799026 - 26798986
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggtttt 322  Q
    |||||||| |||||||| || ||||||||||||||||||||    
T  26799026 gcttaatacatcatttggtctcttaacttatttttggtttt 26798986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 323
Target Start/End: Original strand, 43101899 - 43101931
Alignment:
Q  291 atcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| ||||||||||||||||||||||||    
T  43101899 atcatttggtcccttaacttatttttggttttc 43101931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 282 - 322
Target Start/End: Complemental strand, 48255007 - 48254967
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggtttt 322  Q
    |||||||| || ||||||||||||||||||||||| |||||    
T  48255007 gcttaatacatgatttgatcccttaacttattttttgtttt 48254967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 33793775 - 33793816
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  33793775 gcttaatacatcatttgatcccttaacttatttttggttttc 33793816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 25785964 - 25786005
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  25785964 gcttaatacatcatttggtcccttaacttatttttggttttc 25786005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 25787284 - 25787243
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  25787284 gcttaatacatcatttggtcccttaacttatttttggttttc 25787243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 47136807 - 47136766
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||||||| ||||||||||||||||||||    
T  47136807 gcttaatacatcatttgatccattaacttatttttggttttc 47136766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 13929292 - 13929332
Alignment:
Q  283 cttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    ||||||| |||||||| ||||||||||||||||||||||||    
T  13929292 cttaatacatcatttggtcccttaacttatttttggttttc 13929332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 323
Target Start/End: Complemental strand, 2973126 - 2973087
Alignment:
Q  284 ttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  2973126 ttaatatattatttgatcccttaacttattttttgttttc 2973087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 323
Target Start/End: Original strand, 49139799 - 49139838
Alignment:
Q  284 ttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  49139799 ttaatacatcatttggtcccttaacttatttttggttttc 49139838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 283 - 322
Target Start/End: Original strand, 52741485 - 52741524
Alignment:
Q  283 cttaatatatcatttgatcccttaacttatttttggtttt 322  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  52741485 cttaatatatcatttggtcccttaacttatttttcgtttt 52741524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 323
Target Start/End: Complemental strand, 13930791 - 13930754
Alignment:
Q  286 aatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  13930791 aatacatcatttggtcccttaacttatttttggttttc 13930754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 14071323 - 14071282
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| |||||||| |||||||||||||||    
T  14071323 gcttaatacatcatttggtcccttaatttatttttggttttc 14071282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 21276990 - 21277031
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| || ||||| ||||||||||||||||||||||||    
T  21276990 gcttaatacattatttggtcccttaacttatttttggttttc 21277031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 44977217 - 44977258
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| || ||||| ||||||||||||||||||||||||    
T  44977217 gcttaatacattatttggtcccttaacttatttttggttttc 44977258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 44979431 - 44979472
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| ||||||| |||||||||||||||||| ||||||    
T  44979431 gcttaatacatcatttaatcccttaacttattttttgttttc 44979472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 47411568 - 47411527
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| |||||||||||||||| |||||||    
T  47411568 gcttaatacatcatttggtcccttaacttattttcggttttc 47411527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 295 - 323
Target Start/End: Original strand, 13641266 - 13641294
Alignment:
Q  295 tttgatcccttaacttatttttggttttc 323  Q
    |||||||||||||||||||||||||||||    
T  13641266 tttgatcccttaacttatttttggttttc 13641294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 282 - 322
Target Start/End: Original strand, 16217436 - 16217476
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggtttt 322  Q
    |||||||| || ||||||| |||||||||||||||||||||    
T  16217436 gcttaatacataatttgattccttaacttatttttggtttt 16217476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 55953971 - 55953931
Alignment:
Q  283 cttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  55953971 cttaatatatcatttgatcccttaacttatttttgattttc 55953931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 322
Target Start/End: Complemental strand, 1273550 - 1273512
Alignment:
Q  284 ttaatatatcatttgatcccttaacttatttttggtttt 322  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  1273550 ttaatatatcatttggtcccttaacttatttttggtttt 1273512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 37560419 - 37560378
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  37560419 gcttaatacatcatttggtcccttaacttatttttggttttc 37560378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 39590937 - 39590978
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  39590937 gcttaatacatcatttggtcccttaacttatttttggttttc 39590978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 26376321 - 26376366
Alignment:
Q  278 aaatgcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||||||||||  |||| |||||||| |||||||||||||||    
T  26376321 aaatgcttaatatatgctttggtcccttaaattatttttggttttc 26376366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 29686252 - 29686293
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||  ||||||||||||||||||||||||    
T  29686252 gcttaatacatcatttagtcccttaacttatttttggttttc 29686293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 29688094 - 29688053
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| || ||||| ||||||||||||||||||||||||    
T  29688094 gcttaatacattatttggtcccttaacttatttttggttttc 29688053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 31711088 - 31711129
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| ||||||||||||||||||| ||||    
T  31711088 gcttaatacatcatttggtcccttaacttatttttggatttc 31711129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 31712609 - 31712568
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||||||| ||||||||||||||| ||||    
T  31712609 gcttaatacatcatttgatcctttaacttatttttggatttc 31712568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 33376214 - 33376255
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| || |||||||||||||||||||||    
T  33376214 gcttaatacatcatttggtctcttaacttatttttggttttc 33376255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 33377484 - 33377443
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| |||||||||||||||||| |||||    
T  33377484 gcttaatacatcatttggtcccttaacttatttttgattttc 33377443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 37558994 - 37559035
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| | ||||||||||||||||||||||    
T  37558994 gcttaatacatcatttggttccttaacttatttttggttttc 37559035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 315
Target Start/End: Complemental strand, 39592409 - 39592376
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttt 315  Q
    ||||||||||||||||| ||||||||||||||||    
T  39592409 gcttaatatatcatttggtcccttaacttatttt 39592376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 44305099 - 44305058
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    ||||||||||||||||||| | ||||||||||||| ||||||    
T  44305099 gcttaatatatcatttgattcattaacttattttttgttttc 44305058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 315
Target Start/End: Complemental strand, 49923916 - 49923883
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttt 315  Q
    ||||||||||||||||| ||||||||||||||||    
T  49923916 gcttaatatatcatttggtcccttaacttatttt 49923883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 315
Target Start/End: Complemental strand, 54374072 - 54374039
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttt 315  Q
    |||||||| |||||||||||||||||||||||||    
T  54374072 gcttaatacatcatttgatcccttaacttatttt 54374039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 282 - 322
Target Start/End: Complemental strand, 46796146 - 46796106
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggtttt 322  Q
    |||||||| ||| |||| |||||||||||||||||||||||    
T  46796146 gcttaatacatcgtttggtcccttaacttatttttggtttt 46796106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 282 - 322
Target Start/End: Complemental strand, 21010614 - 21010574
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggtttt 322  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  21010614 gcttaatatatcatttgatcccttaacttattttttgtttt 21010574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 35799504 - 35799549
Alignment:
Q  278 aaatgcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||| ||||||| ||||||| |||||||||||||||||||||||||    
T  35799504 aaatacttaatacatcatttcatcccttaacttatttttggttttc 35799549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 37867752 - 37867793
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  37867752 gcttaatacatcatttggtcccttaacttatttttggttttc 37867793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 4829461 - 4829502
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||||| ||||||||||||||| ||||||    
T  4829461 gcttaatacatcatttgattccttaacttatttttcgttttc 4829502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 7038452 - 7038411
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| ||||||||||||||||||| ||||    
T  7038452 gcttaatacatcatttggtcccttaacttatttttggatttc 7038411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 23177669 - 23177710
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| |||||||| |||||||||||||||    
T  23177669 gcttaatacatcatttggtcccttaatttatttttggttttc 23177710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 23588926 - 23588967
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| |||||||| |||||||||||||||    
T  23588926 gcttaatacatcatttggtcccttaatttatttttggttttc 23588967  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 42029078 - 42029037
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| ||||||||| ||||||||||||||    
T  42029078 gcttaatacatcatttggtcccttaacgtatttttggttttc 42029037  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 4701606 - 4701566
Alignment:
Q  283 cttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||||||||||| |||||||| ||||||||| |||||    
T  4701606 cttaatatatcatttggtcccttaatttatttttgattttc 4701566  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 282 - 322
Target Start/End: Complemental strand, 11575575 - 11575535
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggtttt 322  Q
    |||||||| |||||||| ||| |||||||||||||||||||    
T  11575575 gcttaatacatcatttggtccattaacttatttttggtttt 11575535  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 28109988 - 28109948
Alignment:
Q  283 cttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||||| ||||| ||||||||||||||||| ||||||    
T  28109988 cttaatatatgatttggtcccttaacttatttttcgttttc 28109948  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 323
Target Start/End: Complemental strand, 33802138 - 33802096
Alignment:
Q  281 tgcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    ||||||||| |||||||| ||||||||||||||||||||||||    
T  33802138 tgcttaatacatcatttggtcccttaacttatttttggttttc 33802096  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 5311275 - 5311316
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  5311275 gcttaatacatcatttggtcccttaacttatttttggttttc 5311316  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 33807685 - 33807726
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| || ||||||||||||||||||||||||||||||    
T  33807685 gcttaatacattatttgatcccttaacttatttttggttttc 33807726  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 31738359 - 31738400
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| ||| |||| ||||||||||||||||||||||||    
T  31738359 gcttaatacatcctttggtcccttaacttatttttggttttc 31738400  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 34084252 - 34084211
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||| ||||||||||||||| ||||||||    
T  34084252 gcttaatacatcatttggtcccttaacttatttctggttttc 34084211  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 295 - 323
Target Start/End: Complemental strand, 22300010 - 22299982
Alignment:
Q  295 tttgatcccttaacttatttttggttttc 323  Q
    |||||||||||||||||||||||||||||    
T  22300010 tttgatcccttaacttatttttggttttc 22299982  T

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Target: scaffold2127 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold2127
Description:

Target: scaffold2127; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 635 - 594
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||||||| ||||||||||||||||||||    
T  635 gcttaatacatcatttgatccattaacttatttttggttttc 594  T

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Target: scaffold0290 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 8375 - 8416
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||  |||||||| ||||||||||||||||||||||||    
T  8375 gcttaatccatcatttggtcccttaacttatttttggttttc 8416  T

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Target: scaffold0084 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 323
Target Start/End: Complemental strand, 13320 - 13283
Alignment:
Q  286 aatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  13320 aatacatcatatgatcccttaacttatttttggttttc 13283  T

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Target: scaffold0046 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 23402 - 23443
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  23402 gcttaatacatcatatggtcccttaacttatttttggttttc 23443  T

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Target: scaffold0034 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 315
Target Start/End: Original strand, 98045 - 98078
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttt 315  Q
    |||||||| |||||||||||||||||||||||||    
T  98045 gcttaatacatcatttgatcccttaacttatttt 98078  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 73106 - 73065
Alignment:
Q  282 gcttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    |||||||| |||||||  ||||||||||||||||||||||||    
T  73106 gcttaatacatcatttagtcccttaacttatttttggttttc 73065  T

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Target: scaffold0051 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 22125 - 22165
Alignment:
Q  283 cttaatatatcatttgatcccttaacttatttttggttttc 323  Q
    ||||||| |||||||||||||||| |||||||||| |||||    
T  22125 cttaatacatcatttgatcccttaccttatttttgattttc 22165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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