View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20047_low_16 (Length: 289)
Name: NF20047_low_16
Description: NF20047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20047_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 40256421 - 40256147
Alignment:
| Q |
1 |
tatttgtatgaatgaattgaaaaggatagtatttttgcaggtacgaatatgattttatccaaatgatattggagagggccaaaaacattaaaactcgatt |
100 |
Q |
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| T |
40256421 |
tatttgtatgaatgaattgaaaaggatagtatttttgcaggtacgaatatgattttatccaaatgatattggagagggccaaaaacattaaaactcgatt |
40256322 |
T |
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| Q |
101 |
gtacatacaaagcatggatatggattagaaggttctcttacacaatagtgc--cacaagaaataattgatcgcaagccatcactagttcataaatggatt |
198 |
Q |
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| T |
40256321 |
gtacatacaaagcatggatatggattagaaggttctcttacacaatagtgccacacaagaaagaattgatcgcaagccatcactagttcataaatggatt |
40256222 |
T |
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| Q |
199 |
aagtatagtgttgtaatgtgtacatgttttaatcaaactacactaatttgttaagagataaatacatataaaaac |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40256221 |
aagtatagtgttgtaatgtgtacatgttttaatcaaactacactaatttgttaagagataaatacatataaaaac |
40256147 |
T |
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