View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20047_low_18 (Length: 273)
Name: NF20047_low_18
Description: NF20047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20047_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 2 - 254
Target Start/End: Original strand, 48493184 - 48493436
Alignment:
| Q |
2 |
attcttgcaaaaacattctaagtgtttaatgcggtagagttaatggatataccaacaattgaaactcaaccaccaatataacttcattaatcacgaattc |
101 |
Q |
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| T |
48493184 |
attcttgcaaaaacattctaagtgtttaatgcggtagagttaatggatataccaacaattgaaactcaaccaccaatataacttcattaatcacgaattc |
48493283 |
T |
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| Q |
102 |
aaatgtcgttaatcataattttcaagtgtccaattgcatgtagatttgaacacgcgaaagttgtggtaaatcacgtcaaaatttgtggtcagtgaagtta |
201 |
Q |
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| T |
48493284 |
gaatgtcgttaatcataattttcaagtgtccaattgcatgtagatttgaacacgcgaaagttgtggtaaatcacgtcaaaatttgtggtcagtgaagtta |
48493383 |
T |
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| Q |
202 |
cattaatggttaatgagtttagattgttgtcgcaaaagtagtttaattttagt |
254 |
Q |
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| T |
48493384 |
cattaatggttaatgagtttagattgttgtcgcaaaagtagtttaattttagt |
48493436 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 29136964 - 29136883
Alignment:
| Q |
73 |
accaatataacttcattaatcacgaattcaaatgtcgttaatcataattttcaagtgtccaattgcatgtagatttgaacac |
154 |
Q |
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| T |
29136964 |
accaatgtaacttcattaaacacgaatttggatgtggttaaccataattttcagatgttcaactacatgtagatttgaacac |
29136883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 5728414 - 5728334
Alignment:
| Q |
140 |
tgtagatttgaacacgcgaaagttgtggtaaatcacgtcaaaatttgtggtcagtgaagttacattaatggttaatgagttt |
221 |
Q |
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| T |
5728414 |
tgtagatttgaacacctgaaagttatgattaatcacatccaaatttatgg-caatgaagttacgttaatggttaatgagttt |
5728334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 8466995 - 8467044
Alignment:
| Q |
172 |
tcacgtcaaaatttgtggtcagtgaagttacattaatggttaatgagttt |
221 |
Q |
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| T |
8466995 |
tcacgtcaaaattcttggttaatgaagttacattgatggttaatgagttt |
8467044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 40309784 - 40309844
Alignment:
| Q |
115 |
cataattttcaagtgtccaattgcatgtagatttgaacacgcgaaagttgtggtaaatcac |
175 |
Q |
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| T |
40309784 |
cataattttcaagtatttaactgcatgtaggtttgaacacttgaaagttgtggttaatcac |
40309844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 40329325 - 40329385
Alignment:
| Q |
115 |
cataattttcaagtgtccaattgcatgtagatttgaacacgcgaaagttgtggtaaatcac |
175 |
Q |
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| T |
40329325 |
cataattttcaagtatttaactgcatgtaggtttgaacacttgaaagttgtggttaatcac |
40329385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 33577151 - 33577232
Alignment:
| Q |
73 |
accaatataacttcattaatcacgaattcaaatgtcgttaatcataattttcaagtgtccaattgcatgtagatttgaacac |
154 |
Q |
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| T |
33577151 |
accaatgtaacttcattaaccacaaatttgaatgtggttaaccattattttcagatgttcaactccatgtagatttgaacac |
33577232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 43727949 - 43727893
Alignment:
| Q |
163 |
tgtggtaaatcacgtcaaaatttgtggtcagtgaagttacattaatggttaatgagt |
219 |
Q |
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| T |
43727949 |
tgtggtaaatcatgcccaaatttgtgattaatgaagttactttaatggttaatgagt |
43727893 |
T |
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