View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20047_low_2 (Length: 649)
Name: NF20047_low_2
Description: NF20047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20047_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 466; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 38705997 - 38706462
Alignment:
| Q |
1 |
tctttctctttgttgtcctctctgtcttctcaacaattcgttgttctgttcttacctcaatgcctctctgtctctcaaacacaaaaactctcatacatag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38705997 |
tctttctctttgttgtcctctctgtcttctcaacaattcgttgttctgttcttacctcaatgcctctctgtctctcaaacacaaaaactctcatacatag |
38706096 |
T |
|
| Q |
101 |
atcgaaacaatacctaatttttgtgtgtatcatttttctgaattttcattctcattggcttaaaatgatatgattgtgattcttctctcttcttttttgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38706097 |
atcgaaacaatacctaatttttgtgtgtatcatttttctgaattttcattctcattggcttaaaatgatatgattgtgattcttctctcttcttttttgc |
38706196 |
T |
|
| Q |
201 |
gggtaaaccttccttcaaaaccctaattatcattctaatctgatatctaaatcacatttctgttgctgaaggtgatattgtttgagacaatgtcctagct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38706197 |
gggtaaaccttccttcaaaaccctaattatcattctaatctgatatctaaatcacatttctgttgctgaaggtgatattgtttgagacaatgtcctagct |
38706296 |
T |
|
| Q |
301 |
gtgaattatggttttaaataaaatgtatattggttaattttatttgctttgaaattattttcttatcaacattaattgtttccttcaatggaaaatgttc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38706297 |
gtgaattatggttttaaataaaatgtatattggttaattttatttgctttgaaattattttcttatcaacattaattgtttccttcaatggaaaatgttc |
38706396 |
T |
|
| Q |
401 |
aatttgatttgtttacattttccactttttgtgtttaatctttggtttaaacggtctattatgaaa |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38706397 |
aatttgatttgtttacattttccactttttgtgtttaatctttggtttaaacggtctattatgaaa |
38706462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 501 - 648
Target Start/End: Original strand, 38706497 - 38706644
Alignment:
| Q |
501 |
gacgatgtcattgacaaattaatttgaattgttaatcatttctgtggtctatttggttggagaggaaatgatgaaaacactaatcagaaagtgatggtta |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38706497 |
gacgatgtcattgacaaattaatttgaattgttaatcatttctgtggtctatttggttggagaggaaatgatgaaaacactaatcagaaagtgatggtta |
38706596 |
T |
|
| Q |
601 |
tttattcctctttaattataataagggcattgcaaatctaatgcttct |
648 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38706597 |
tttattcctctttaattataataagggcattgcaaatctaatgcttct |
38706644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University