View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20047_low_4 (Length: 499)
Name: NF20047_low_4
Description: NF20047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20047_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 8 - 483
Target Start/End: Complemental strand, 38397204 - 38396729
Alignment:
| Q |
8 |
aggagcagagacccagtagtaattcagagtttagttgaaacgtcagtagagccttgtcaagaattatttttattaggaatcgaactcgattttcttgaac |
107 |
Q |
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||||| ||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38397204 |
aggagaagagacctagtagtaattcagagtttagttaagacgtcagtagagccttgtcaagaattatttttattaggaatcgaactcgattttcttgaac |
38397105 |
T |
|
| Q |
108 |
tattgatcctagtgaaagttcattaaccatttaaactcagtcatttagctaattttgannnnnnnnattaggaatgcaccgacggtataaaa-tatgtat |
206 |
Q |
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||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
38397104 |
tattgatcctagtaaaagttcattaaccatttaaactcaatcatttagttaattttg-gtttttttattaggaatgcaccgacggtataaaaatatgtat |
38397006 |
T |
|
| Q |
207 |
ttttaaattaaggaataaatgcatttctaatgataagatattggttgtataaaataattttgaaattaatatatatttttgtcctaaaaatatatcttaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38397005 |
ttttaaattaaggaataaatgcatttctaatgataagacattggttgtataaaataattttgaaattaatatatatttttgtcctaaaaatatatcttaa |
38396906 |
T |
|
| Q |
307 |
aatccaccacctaagacgaaccctccttatgttgagtttaggtcatgtctccttagaatggagaactacttcttgtatttctttctttgtatgagtttag |
406 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38396905 |
aatccaccacctaagacgaaccctccttgtgttgagtttaggtcatgtctccttagaatggagaactacttcttgtatttctttctttatatgagtttaa |
38396806 |
T |
|
| Q |
407 |
tatcacttttgtacttgtttccatcttttataattaaaattatcttgttgttnnnnnnntgtttgattttaagtttt |
483 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38396805 |
taccacttttgtacttgtttccatcttttataattaaaattatcttgttgttaaaaaaatgtttgattttaagtttt |
38396729 |
T |
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