View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20047_low_7 (Length: 363)
Name: NF20047_low_7
Description: NF20047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20047_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 17269846 - 17269647
Alignment:
| Q |
1 |
cttctattttttgcatgtaattattctaatagtaataaacaaagaagacaaaagatctaggttttcagcttttggcatgccaacaaatcttgtctatttg |
100 |
Q |
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| T |
17269846 |
cttctattttttgcatgtaatttttctaatagtaataaacaaagaagacaaaagatctaggttttcagcttttggcatgccaacaaatcttgtctatttg |
17269747 |
T |
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| Q |
101 |
aattagaagaaataggaaagagggcaaatggcaaatcataggattcctgtgaatttcatcaagatgtttcttgttggagtgtttaatcttcatttgattt |
200 |
Q |
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| T |
17269746 |
aattagaagaaataggaaagagggcaaatggcaaatcattggattcccgtgaatttcatcaagatggatcttgttggagtgtttaatcttcatttgattt |
17269647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 257 - 363
Target Start/End: Complemental strand, 17269644 - 17269538
Alignment:
| Q |
257 |
ttggtagagttcagatctgcttgggaaaagataagagagaaacgtgatttgcatagcagcgattgttggcggcagaaggagggtgggaagagagaaggaa |
356 |
Q |
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| T |
17269644 |
ttggtagagttcatatctgcttgggagaagataagagagaaacgtgatttgcagagcagcgattggcagcggcagaaggagggtgggaagagagaaggaa |
17269545 |
T |
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| Q |
357 |
aagggat |
363 |
Q |
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||||||| |
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| T |
17269544 |
aagggat |
17269538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 254
Target Start/End: Original strand, 26948381 - 26948610
Alignment:
| Q |
33 |
taataaacaaagaagacaaaagatctaggttttcagcttttggcatgccaacaaatcttgtctatttgaattagaagaaataggaaagagggcaaatggc |
132 |
Q |
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| T |
26948381 |
taataaacaatgaagacaaaataattgggttttcattgtcaggcatgtcaagaaatcttgtctcgttgaattagaaaaaatagga----gggtaaatggc |
26948476 |
T |
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| Q |
133 |
aaatcat-aggattcctgtgaatttcatcaagatgtttcttgt------tggagtgtttaatcttcattt-----gatttctttacttgttccatctttt |
220 |
Q |
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||||||| ||||| | ||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||| ||||| ||||||| |
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| T |
26948477 |
aaatcattaggatgcatgtgaatttcatcaagatggatcttgtctctcttggagtgtttaatcttcatttgatttgatttctttatttgttttatctttt |
26948576 |
T |
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| Q |
221 |
ggaattttagaattgaaaactcttatatgtaatt |
254 |
Q |
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| T |
26948577 |
ggaatttcagatttgaaaactcttaaatgcaatt |
26948610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 51243490 - 51243404
Alignment:
| Q |
179 |
gtgtttaatcttcatttgatttctttacttgttccatcttttggaattttagaattgaaaactcttatatgtaattcattggtagag |
265 |
Q |
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| T |
51243490 |
gtgtttaatcttaatttgatttctttatttgttttatcttttggaatttcagaattggaaattcttaaatgcaattcattcgtagag |
51243404 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 49756046 - 49755974
Alignment:
| Q |
2 |
ttctattttttgcatgtaattattctaatagtaataaacaaagaagacaaaagatctaggttttcagcttttgg |
75 |
Q |
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||||||||||||| ||||||| ||||||||||||||||||| ||||||||||| | ||||| |||||||||| |
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| T |
49756046 |
ttctattttttgc-tgtaatttttctaatagtaataaacaatatagacaaaagatttgggtttccagcttttgg |
49755974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 49755876 - 49755820
Alignment:
| Q |
253 |
ttcattggtagagttcagatctgcttgggaaaagataagagagaaacgtgatttgca |
309 |
Q |
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|||||| ||||||||||| |||| |||||| |||||||| ||||||||||||||||| |
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| T |
49755876 |
ttcattcgtagagttcaggtctgtttgggagaagataagggagaaacgtgatttgca |
49755820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 49755921 - 49755877
Alignment:
| Q |
177 |
gagtgtttaatcttcatttgatttctttacttgttccatcttttg |
221 |
Q |
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| T |
49755921 |
gagtgtttaatcttcttttgatttctttatttgttccatcttttg |
49755877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 49755974 - 49755942
Alignment:
| Q |
106 |
gaagaaataggaaagagggcaaatggcaaatca |
138 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
49755974 |
gaagaaataggaaagagggcaaatggcaaatca |
49755942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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