View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20048_high_7 (Length: 289)
Name: NF20048_high_7
Description: NF20048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20048_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 282
Target Start/End: Complemental strand, 17378397 - 17378130
Alignment:
| Q |
15 |
ttcatcagtgccacaaatttcttagccattaaacaacatgcatagcttattcgattgaatgcttgattagtactatatagtgcttttccaattcttactt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17378397 |
ttcatcagtgccacaaatttcttagccattaaacaacatgcatagcttattcgattgaatgcttgattagtactatatagtgcttttccaattcttactt |
17378298 |
T |
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| Q |
115 |
gaaacgagtcaacnnnnnnnnnttcatacttccaaatgttgatggctattaaggttttaattttttgcactaactagattgactatctttgtttaacaga |
214 |
Q |
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| T |
17378297 |
gaaacgagtaaacaaaaaaaaattcatacttccaaatgttgatggctattaaggttttaattttttgcactaactagattgactatctttgtttaacaga |
17378198 |
T |
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| Q |
215 |
aacagataattagcctccaattttataaagttttttaggaatgatcaaccaaatattaattcttctca |
282 |
Q |
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| T |
17378197 |
aacagataattagcctccaattttataaagttttttaggaatgatcaaccaaatattaattcttctca |
17378130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 15 - 280
Target Start/End: Complemental strand, 17390594 - 17390331
Alignment:
| Q |
15 |
ttcatcagtgccacaaatttcttagccattaaacaacatgcatagcttattcgattgaatgcttgattagtactatatagtgcttttccaattcttactt |
114 |
Q |
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| T |
17390594 |
ttcatcagtaccacagatttcttagccattaaactacatgcatagcttattcgattgagtgcttgattagtactatatagtgcttttccaattcttactt |
17390495 |
T |
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| Q |
115 |
gaaacgagtcaacnnnnnnnnnttcatacttccaaatgttgatggctattaaggttttaattttttgcactaactagattgactatctttgtttaacaga |
214 |
Q |
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| T |
17390494 |
gaaacgagtcaac--acaaaaattcatacttccaaatgttgataactattaagattttacttttttgcactacctaggctgactatcttttcttaacaga |
17390397 |
T |
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| Q |
215 |
aacagataattagcctccaattttataaagttttttaggaatgatcaaccaaatattaattcttct |
280 |
Q |
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| T |
17390396 |
aacagataattagcctccacttttatgaagttttataggaatgatcaaccaaatattaattcttct |
17390331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 19808620 - 19808529
Alignment:
| Q |
18 |
atcagtgccacaaatttcttagccattaaacaacatgcat--agcttattcgattgaatgcttgattagtactatatagtgcttttccaatt |
107 |
Q |
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| T |
19808620 |
atcagtgccacaattttcgtagccataaaacaacatgcatgaagcttattcgattgagtgatcgatcagtaatatatagtgcttttccaatt |
19808529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 241
Target Start/End: Complemental strand, 19808526 - 19808423
Alignment:
| Q |
138 |
tcatacttccaaatgttgatggctattaaggttttaattttttgcactaactagattgactatctttgtttaacagaaacagataattagcctccaattt |
237 |
Q |
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||||||||| ||| |||||||||||||||| |||| |||| |||||| | | ||||||| ||||||| ||||||||||||| ||||||||||| || |
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| T |
19808526 |
tcatacttcgaaacgttgatggctattaagctttttcttttaagcactatcgaccttgactaaatttgtttcacagaaacagatagttagcctccaaatt |
19808427 |
T |
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| Q |
238 |
tata |
241 |
Q |
| |
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|||| |
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| T |
19808426 |
tata |
19808423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 20114633 - 20114533
Alignment:
| Q |
16 |
tcatcagtgccacaaatttcttagccattaaacaacatgcat--agcttattcgattgaatgcttgattagtactatatagtgcttttccaattcttact |
113 |
Q |
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|||||| ||| |||||| ||||| | || ||||||||||||| |||||||| ||||| |||||||||| |||||||||| |||||| ||||| |||| |
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| T |
20114633 |
tcatcaatgctacaaatatcttatctataaaacaacatgcatgaagcttatttgattgtttgcttgattaacactatatagttcttttctaattcgtact |
20114534 |
T |
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| Q |
114 |
t |
114 |
Q |
| |
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| |
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| T |
20114533 |
t |
20114533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 26052172 - 26052342
Alignment:
| Q |
15 |
ttcatcagtgccacaaatttcttagccattaaacaacatgcat--agcttattcgattgaatgcttgattagtactatatagtgcttttccaattcttac |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||| || ||||||||||||||| |||||||||||||||||||| || |
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| T |
26052172 |
ttcatcagtgccacaaatttcttagccattaaacaacatgcatgaaacttattcgat-gagtgcttgattagtactttatagtgcttttccaattctaac |
26052270 |
T |
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| Q |
113 |
ttgaaacgagtcaacnnnnnnnnnttcatacttccaaatgttgatggctattaaggttttaattttttgcac |
184 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
26052271 |
ttgaaacgagtcaaccaaaaaaaattcatacttccaaatgttgatggctattaagattttaaatttttgcac |
26052342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 267
Target Start/End: Complemental strand, 30212732 - 30212655
Alignment:
| Q |
188 |
ctagattgactatctttgtttaacagaaacagataattagcctccaattttataaagttttttaggaatgatcaaccaaa |
267 |
Q |
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|||| ||||||| |||||||| ||||||| ||| |||||| ||||||||| ||||||||| ||||||||||||||||| |
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| T |
30212732 |
ctagcttgactaactttgtttcacagaaagagaaaattaggctccaattt--taaagttttaaaggaatgatcaaccaaa |
30212655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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