View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20048_low_1 (Length: 701)
Name: NF20048_low_1
Description: NF20048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20048_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 157 - 685
Target Start/End: Complemental strand, 44145765 - 44145240
Alignment:
| Q |
157 |
tttactttgtagttctctaatcttcatacgagtaagacatgagttaaacaactctgcattttttattcctaggtgcaaaaaagtttaaccatcatatgct |
256 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||| |||| | ||||||||| |||||| |
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| T |
44145765 |
tttactttgtagttctctaatcttcatacgtgtaagacatgagttaaacaactctgcattttttattccca--tgctaaaa-gcttaaccatcgtatgct |
44145669 |
T |
|
| Q |
257 |
aagagcatctttaatccctttgaagttcaacaaattaaaagcattcccatttcattttggtttgttagcattgaaaatatgatggaaactactcttgatg |
356 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||| |||| |||||| ||| |||||||||||||||||||||| |
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| T |
44145668 |
aagagcatctttaatccctttgaagttcaacaaattagaaacattcccatttcattatggtatgttggcattggaaacatgatggaaactactcttgatg |
44145569 |
T |
|
| Q |
357 |
cacataccttctcttcacttgagagacactaagagcaaagatgctcctgaatcatctggaagaagaagccaagacctttggaaggaagtgtggagagcca |
456 |
Q |
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| T |
44145568 |
cccataccatctcttctcctgagagacactaggagcgaagatgctctcgagtcatcctacagaagaagccaagacctttggaaggaagtgtggagagcca |
44145469 |
T |
|
| Q |
457 |
ctgtacttaatagtgtgacgaatttcctttagataccagacatgaatatcttcccgagtcctgaccgaattaatctagcaagaaagggtgtaaaactgga |
556 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44145468 |
ctgtacttaatagtgtgacgaatttcctttagataccagacatgaatatcttcccgagtcctgactgaattaatctagcaagaaagggtgtaaaactgga |
44145369 |
T |
|
| Q |
557 |
aacactctgtccaaatgtggctactccattactctacctgtacagaggctgaaaattaatgttggtgttggttgttttgaatgttgtactggttatggct |
656 |
Q |
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| T |
44145368 |
aacactctgtccaaatgtggctactccattactctacctgtacagaggctgaaaattaatgttggtgttggttgttttgaatgttgtactggttatggct |
44145269 |
T |
|
| Q |
657 |
ttctagtgcgcagttatgcaggttctgtg |
685 |
Q |
| |
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| T |
44145268 |
ttctagtgcgcagttatgcaggttctgtg |
44145240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 97 - 570
Target Start/End: Original strand, 44156147 - 44156610
Alignment:
| Q |
97 |
atgatagtactacttttaattacttatattaattctttttgacttactttattaagggtgtttactttgtagttctctaatcttcatacgagtaagacat |
196 |
Q |
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||||||||| ||| |||||||||||||||||||||| ||||||||| ||||||||| ||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
44156147 |
atgatagtattacctttaattacttatattaattctctttgacttattttattaagagtgtttactatgtaattctctaatcttcatacgagtaagacat |
44156246 |
T |
|
| Q |
197 |
gagttaaacaactctgcattttttattcctaggtgcaaaaaagtttaaccatcatatgctaagagcatctttaatccctttgaagttcaacaaattaaaa |
296 |
Q |
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||||||||||||||||||||||||||||| | ||| |||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44156247 |
gagttaaacaactctgcattttttattccca--tgctaaaa-gcttaaccatcgtatgctaagagcatctttaatccctttgaagttcaacaaattagaa |
44156343 |
T |
|
| Q |
297 |
gcattcccatttcattttggtttgttagcattgaaaatatgatggaaactactcttgatgcacataccttctcttcacttgagagacactaagagcaaag |
396 |
Q |
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||||||||||||||| |||| |||| |||||| ||| ||||||||||||||||||||||| |||||| ||||||| | |||||||||||| |||| ||| |
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| T |
44156344 |
acattcccatttcattatggtatgttggcattggaaacatgatggaaactactcttgatgcccataccatctcttctcctgagagacactaggagcgaag |
44156443 |
T |
|
| Q |
397 |
atgctcctgaatcatctggaagaagaagccaagacctttggaaggaagtgtggagagccactgtacttaatagtgtgacgaatttcctttagataccaga |
496 |
Q |
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| T |
44156444 |
atgctctcgagtcatcctacagaagaagccaagacctttggaaggaagtgtggagagccactgtacttaatagtgtgacgaatttcctttagataccaga |
44156543 |
T |
|
| Q |
497 |
catgaatatcttcccgagtcctgaccgaattaatctagcaagaaagggtgtaaaactggaaacactctgtccaa |
570 |
Q |
| |
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||| ||||| ||||| |||| ||||||||||| |||||||| ||||||| |||||||||| ||||||| |
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| T |
44156544 |
cataaatatattccc-------gaccaaattaatctagaaagaaaggttgtaaaattggaaacactttgtccaa |
44156610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 44146095 - 44145959
Alignment:
| Q |
21 |
aagtcttaagctacgagaattcacaagaaagttggtaagatcaatagaatgtggaatatgaatgaaaagtagatacatgatagtactacttttaattact |
120 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44146095 |
aagtcttaagctaagagaattcacaagaaagttggtaagatcaatagaatgtggaatatgaatgaaaagtagatacatgatagtactacctttaattact |
44145996 |
T |
|
| Q |
121 |
tatattaattctttttgacttactttattaagggtgt |
157 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
44145995 |
tatattaattctttttgacttactttattaagggtgt |
44145959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 44155976 - 44156052
Alignment:
| Q |
21 |
aagtcttaagctacgagaattcacaagaaagttggtaagatcaatagaatgtggaatatgaatgaaaagtagataca |
97 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||| || |||| ||||||||||| ||||||||||||| |
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| T |
44155976 |
aagtcttaagctacgagaattcacaagaaagttggtaaaatcactaaaatggggaatatgaattaaaagtagataca |
44156052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 589 - 654
Target Start/End: Original strand, 44158099 - 44158164
Alignment:
| Q |
589 |
tctacctgtacagaggctgaaaattaatgttggtgttggttgttttgaatgttgtactggttatgg |
654 |
Q |
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|||||||||||| |||||||||| ||||| || || || ||||||||||| ||||||||||||||| |
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| T |
44158099 |
tctacctgtacataggctgaaaactaatgctgatgctgattgttttgaatattgtactggttatgg |
44158164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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