View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20048_low_12 (Length: 256)
Name: NF20048_low_12
Description: NF20048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20048_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 49 - 242
Target Start/End: Complemental strand, 24441464 - 24441275
Alignment:
| Q |
49 |
tcacaacaattaactaacaaattttatgaagtattatataagaaacatttttctcatattatacctaaagctcctaaaattctaggtacggccttgatct |
148 |
Q |
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| T |
24441464 |
tcacaacaataaattaacaaattttatgatgtattatataagagacatttttctcatattatacctaaagcccctaaaa--ctatgaacggccttgatct |
24441367 |
T |
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| Q |
149 |
ctagtaaaattgtatccgctagcaagcgacacaaaattctggaagctttccatggagtattttccatcaaaacctatgaagtgcatgataaatt |
242 |
Q |
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| T |
24441366 |
ctagtacaattgtatccgctagcaagcgacac--aattctggaagctttccatggagtactttccatcaaaacctatgaagtgcatgataaatt |
24441275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 24427979 - 24427887
Alignment:
| Q |
150 |
tagtaaaattgtatccgctagcaagcgacacaaaattctggaagctttccatggagtattttccatcaaaacctatgaagtgcatgataaatt |
242 |
Q |
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| T |
24427979 |
tagtaaaattgaatccacaatcaagtggcacaaaattgtgtaatcttgccatgaagtactttccatccaaatctatgaagtccattataaatt |
24427887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 24441515 - 24441483
Alignment:
| Q |
1 |
tgaagagttactaagatcacaacaatgtttttc |
33 |
Q |
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| T |
24441515 |
tgaagagttaataagatcacaacaatgtttttc |
24441483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 44880082 - 44880142
Alignment:
| Q |
51 |
acaacaattaactaacaaattttatgaagtattatataagaaacatttttctcatattata |
111 |
Q |
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| T |
44880082 |
acaacaatgaactaacaaattttatgatgtattatgtaagggacttttttctcatattata |
44880142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 134
Target Start/End: Original strand, 48646557 - 48646642
Alignment:
| Q |
49 |
tcacaacaattaactaacaaattttatgaagtattatataagaaacatttttctcatattatacctaaagctcctaaaattctagg |
134 |
Q |
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| T |
48646557 |
tcacaataatgagctaacaaattttatgatgtatcatttaaggggcatttttctcatattatgcctaagggtcctaaaactctagg |
48646642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 25622081 - 25622142
Alignment:
| Q |
49 |
tcacaacaattaactaacaaattttatgaagtattatataa-gaaacatttttctcatattat |
110 |
Q |
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| T |
25622081 |
tcacaacaataaactaacaaattttatgatgtattatgtaaggagaca-ttttctcatattat |
25622142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 134
Target Start/End: Original strand, 14904671 - 14904756
Alignment:
| Q |
49 |
tcacaacaattaactaacaaattttatgaagtattatataagaaacatttttctcatattatacctaaagctcctaaaattctagg |
134 |
Q |
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| T |
14904671 |
tcacaacaatgagccaacaaattttatgatgtattatgtaaggggcttttttctcatattatgcttaaggcccctaaaactctagg |
14904756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 134
Target Start/End: Original strand, 9137949 - 9138034
Alignment:
| Q |
49 |
tcacaacaattaactaacaaattttatgaagtattatataagaaacatttttctcatattatacctaaagctcctaaaattctagg |
134 |
Q |
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| T |
9137949 |
tcacaacaatgaactaaaaaaatttgtgaagtattatataaggggcccttttttcatattatgcctaaggcccgtaaaattctagg |
9138034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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