View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20048_low_13 (Length: 251)
Name: NF20048_low_13
Description: NF20048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20048_low_13 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 129 - 251
Target Start/End: Complemental strand, 33614110 - 33613984
Alignment:
| Q |
129 |
gtgtatatcttaaacccaaaaacaatcgtatctaacactctactaaagaagttatggaaaccaaagctgagagac----ttattccctctgcatcattta |
224 |
Q |
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| T |
33614110 |
gtgtatatcttaaatccaaaaacaatcgtatctaacgctctactaaagaagttatggaaaccaaagctgagagacaaagttattccctctgcatcatttg |
33614011 |
T |
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| Q |
225 |
cttgaagtaaagataatcacagttgaa |
251 |
Q |
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| T |
33614010 |
cttgaggtaaagataatcacagttgaa |
33613984 |
T |
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Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 33614229 - 33614165
Alignment:
| Q |
10 |
attatactatactataaatactccgttcatacatagtaattattacatccaatcaatcaaataag |
74 |
Q |
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| T |
33614229 |
attatactatactataaatacaccgttcatacatagtaattattacatccaatcaatcaaataag |
33614165 |
T |
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