View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20048_low_14 (Length: 251)
Name: NF20048_low_14
Description: NF20048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20048_low_14 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 22626220 - 22625988
Alignment:
| Q |
19 |
tattattactggtaacaacgccttcaaaataaccataatattcaagaacaccaggatcaagaattggtaatatctgcttgcttaacttcaactgtggggc |
118 |
Q |
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| T |
22626220 |
tattattactggtaacaacgccttcaaaataaccatagtattcaagaacaccaggatcaagaattggtaaaatctgcttgcttaacttcaactgtggggc |
22626121 |
T |
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| Q |
119 |
aatgcaaggatcaacaagcctgttcttagattccattgatgtcaaatattggttttcatccaaatcaacaatactcttgaataatccattaatgcttcca |
218 |
Q |
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| T |
22626120 |
aatgcaaggatcaacaagcctgttcttagcttccattgatgtcaaatattggttttcatccaaatcaactatactcttgtataatccattcatgcttcca |
22626021 |
T |
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| Q |
219 |
aaggaacaattctctccaaatatttgaacaatt |
251 |
Q |
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| T |
22626020 |
aaggaacaattctctccaaatattcgaacaatt |
22625988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 41 - 251
Target Start/End: Original strand, 22632972 - 22633182
Alignment:
| Q |
41 |
ttcaaaataaccataatattcaagaacaccaggatcaagaattggtaatatctgcttgcttaacttcaactgtggggcaatgcaaggatcaacaagcctg |
140 |
Q |
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| T |
22632972 |
ttcaacataaccataatatttatgaacaccaggtttaagaattggtaatatcgacttgcttaacttcaactgtggggaaatgcaaggatcaacaagcctg |
22633071 |
T |
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| Q |
141 |
ttcttagattccattgatgtcaaatattggttttcatccaaatcaacaatactcttgaataatccattaatgcttccaaaggaacaattctctccaaata |
240 |
Q |
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| T |
22633072 |
ttcttagcttccattgatgtcaaatattggttttcatccaaatcaactatactcttgtataatccattcatgcttccaaaggaacaattctctccaaata |
22633171 |
T |
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| Q |
241 |
tttgaacaatt |
251 |
Q |
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| T |
22633172 |
ttcgaacaatt |
22633182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 207
Target Start/End: Original strand, 23322048 - 23322130
Alignment:
| Q |
125 |
aggatcaacaagcctgttcttagattccattgatgtcaaatattggttttcatccaaatcaacaatactcttgaataatccat |
207 |
Q |
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|||||||||||| || ||||| | ||| |||| ||||| ||||||||||||| || ||||||||||| ||| ||||||||| |
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| T |
23322048 |
aggatcaacaagtctattctttgcttcttttgacttcaaacattggttttcatctaattcaacaatacttttgtataatccat |
23322130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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