View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20048_low_17 (Length: 225)
Name: NF20048_low_17
Description: NF20048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20048_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 31054544 - 31054352
Alignment:
| Q |
16 |
atgataaacctcattaatccagaatgttgatgaacaaaatgttttcaacacatatgcagaaaatccaaaggtggtgtctgtgttcttgagcaaagagcat |
115 |
Q |
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| T |
31054544 |
atgataaacctcattaatccaaaatgttgatgaacaaaatgttttcaacacatatgcagaaaatccaaaggtggtgtctgtgttcttgagcaaagagcat |
31054445 |
T |
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| Q |
116 |
aaactgcatactacacgttcatgggaatttcttggattgcgtggaaatgatatcaactcagcttggcaaaagggaagatttggtgaaaatacc |
208 |
Q |
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| T |
31054444 |
aaattacacactacacgttcatgggaatttcttggattgcgtggaaatgatatcaactcagcttggcaaaagggaagatttggtgaaaatacc |
31054352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 57 - 208
Target Start/End: Complemental strand, 31066072 - 31065921
Alignment:
| Q |
57 |
ttttcaacacatatgcagaaaatccaaaggtggtgtctgtgttcttgagcaaagagcataaactgcatactacacgttcatgggaatttcttggattgcg |
156 |
Q |
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| T |
31066072 |
ttttcaatatatatgcagaaaacccaaaggtggtgtctgtgttcttgagcaaagagcataaactgcacactacacgttcttgggaatttcttggattgca |
31065973 |
T |
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| Q |
157 |
tggaaatgatatcaactcagcttggcaaaagggaagatttggtgaaaatacc |
208 |
Q |
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| T |
31065972 |
tggaaatgatatcaactcagcttggcaaaagggaaggtttggtgaaaatacc |
31065921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 57 - 208
Target Start/End: Complemental strand, 31113287 - 31113136
Alignment:
| Q |
57 |
ttttcaacacatatgcagaaaatccaaaggtggtgtctgtgttcttgagcaaagagcataaactgcatactacacgttcatgggaatttcttggattgcg |
156 |
Q |
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| T |
31113287 |
ttttcaacctatatgcagaaaatccaaaggtggtatctgtgtttttgagcaaagagcataaactgcacactacacgttcttgggaatttcttggattgcg |
31113188 |
T |
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| Q |
157 |
tggaaatgatatcaactcagcttggcaaaagggaagatttggtgaaaatacc |
208 |
Q |
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| T |
31113187 |
tggaaatgatatcaactcagcttggcaaaagggaaggtttggtgaaaatacc |
31113136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 65 - 208
Target Start/End: Complemental strand, 31149456 - 31149313
Alignment:
| Q |
65 |
acatatgcagaaaatccaaaggtggtgtctgtgttcttgagcaaagagcataaactgcatactacacgttcatgggaatttcttggattgcgtggaaatg |
164 |
Q |
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| T |
31149456 |
acatatgcagaaaatccaaaggtggtatctgtgttcttaagcaaatctcataaactgcacacaacacgttcttgggaattccttggactaagtacaaatg |
31149357 |
T |
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| Q |
165 |
atatcaactcagcttggcaaaagggaagatttggtgaaaatacc |
208 |
Q |
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| T |
31149356 |
atgtcaacacagcttggcaaaagggaaggtttggtgaaaatacc |
31149313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 65 - 208
Target Start/End: Complemental strand, 31167748 - 31167605
Alignment:
| Q |
65 |
acatatgcagaaaatccaaaggtggtgtctgtgttcttgagcaaagagcataaactgcatactacacgttcatgggaatttcttggattgcgtggaaatg |
164 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||| || |||||||| |||||||| |||||| | || ||||| |
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| T |
31167748 |
acatatgcagaaaatccaaaggtggtatctgtgttcttaagcaaatctcataaactgcacacaacacgttcttgggaattccttggactaagtacaaatg |
31167649 |
T |
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| Q |
165 |
atatcaactcagcttggcaaaagggaagatttggtgaaaatacc |
208 |
Q |
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| T |
31167648 |
atgtcaacacagcttggcaaaagggaaggtttggtgaaaatacc |
31167605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 71 - 207
Target Start/End: Original strand, 31197963 - 31198099
Alignment:
| Q |
71 |
gcagaaaatccaaaggtggtgtctgtgttcttgagcaaagagcataaactgcatactacacgttcatgggaatttcttggattgcgtggaaatgatatca |
170 |
Q |
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| T |
31197963 |
gcagaaaagcgaaatgtagtgtctgtgttcttgagcaaacctcataaactgcacactacccggtcatgggaatttcttggactgcgcagaaatgctaaga |
31198062 |
T |
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| Q |
171 |
actcagcttggcaaaagggaagatttggtgaaaatac |
207 |
Q |
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| T |
31198063 |
acactgcatggcaaaagggaaaatttggtgaaaatac |
31198099 |
T |
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