View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20048_low_2 (Length: 492)
Name: NF20048_low_2
Description: NF20048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20048_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 13 - 472
Target Start/End: Original strand, 38313204 - 38313663
Alignment:
| Q |
13 |
gagatgaaccaacaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacaca |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38313204 |
gagaagaaccaacaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacaca |
38313303 |
T |
|
| Q |
113 |
accacagtagtcaatatgacagcttctagaattactttccctgcattcagtttcaaagatcatcagaaaacatagcaattattatattgaaaaaccatgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38313304 |
accacagtagtcaatatgacagcttctagaattactttccctgcattcagtttcaaagatcatcagaaaacatagcaattatta-attgaaaaaccatgt |
38313402 |
T |
|
| Q |
213 |
ttatcacaagccaacttaatcaattctcttctcctt-cactttccacctaaaaatatacgcatgggactggatagaaagcaaacaaagcagtagcattca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
38313403 |
ttatcacaagccaacttaatcaattctcttctcctttcactttccacctaaaaatatacacatggggctggatagaaagcaaacaaagcagtagcattca |
38313502 |
T |
|
| Q |
312 |
tctaaacaaagccgataacaaaataaaaagtagtaacagaacaaacccttcgacatacttgtatacttatgccaaatttgaaattttaataagagttatg |
411 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38313503 |
tctaaacaaagccgataacaaaataaaaaatagtaacagaacaaaccctttgacatacttgtatacttatgccaaatttgaaattttaataagaattatg |
38313602 |
T |
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| Q |
412 |
aaaatagaataaatcaagagatttaatttcaatgttaagagtgtaaaaaatttctatactt |
472 |
Q |
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| T |
38313603 |
aaaatagaataaatcaagagatttaatttcaatgttaagagtgtaaaaaatttctatactt |
38313663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 36 - 158
Target Start/End: Original strand, 38280334 - 38280456
Alignment:
| Q |
36 |
acaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaaccacagtagtcaatatgacagc |
135 |
Q |
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||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||| |||| |||| |
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| T |
38280334 |
acaagaatgggcctaaaaagctgaaatcatgacctcttcttgcggcccaaaatgtgtaaagagtcaagctgaacacaactgcagtagttgatataacaga |
38280433 |
T |
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| Q |
136 |
ttctagaattactttccctgcat |
158 |
Q |
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| T |
38280434 |
tactagaatgactttccctgcat |
38280456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 38275393 - 38275533
Alignment:
| Q |
18 |
gaaccaacaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaaccac |
117 |
Q |
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||||||||||||| | ||||||||| ||||||||| ||| |||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| | |
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| T |
38275393 |
gaaccaacaaagcctcgaacaagaatcggcccaaaatgctgaaatcatgacctctctttgcggcccaaaatgtgtaaagagtcaagctgaacgcaactgc |
38275492 |
T |
|
| Q |
118 |
agtagtcaatatgacagcttctagaattactttccctgcat |
158 |
Q |
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|||||| |||| |||| | ||||||| |||||||||||| |
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| T |
38275493 |
agtagttgatataacagatactagaatggctttccctgcat |
38275533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 38303252 - 38303395
Alignment:
| Q |
16 |
atgaaccaacaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaacc |
115 |
Q |
| |
|
|||||| ||||||||| ||| ||||||||| | |||||||| ||||||| || ||||||||| |||||| | |||||||||||||| || ||||||||| |
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| T |
38303252 |
atgaactaacaaagctccaatcaagaatggagctaaaaagctgaaatcataacatctttttgcagcccaagacgtgtagagagtcaaactcaacacaacc |
38303351 |
T |
|
| Q |
116 |
acagtagtcaatatgacagcttctagaattactttccctgcatt |
159 |
Q |
| |
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||| |||| |||||||||||||||| ||||||||| ||| |||| |
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| T |
38303352 |
acattagttaatatgacagcttctaaaattacttttcctacatt |
38303395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 38271642 - 38271782
Alignment:
| Q |
18 |
gaaccaacaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaaccac |
117 |
Q |
| |
|
|||||||||||||| | ||||||||| || | ||| ||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| | |
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| T |
38271642 |
gaaccaacaaagctcccaacaagaatcggtctaaagagccgaaatcatgacctctttttgcggcccaatatgtgtaaagagtcaagctgaacacaactgc |
38271741 |
T |
|
| Q |
118 |
agtagtcaatatgacagcttctagaattactttccctgcat |
158 |
Q |
| |
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| |||| |||| |||| | |||||||| |||||||||||| |
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| T |
38271742 |
aatagttgatataacagatactagaattgctttccctgcat |
38271782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 38272164 - 38272202
Alignment:
| Q |
211 |
gtttatcacaagccaacttaatcaattctcttctccttc |
249 |
Q |
| |
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|||||| | |||||||||||||||||||||||||||||| |
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| T |
38272164 |
gtttatgaaaagccaacttaatcaattctcttctccttc |
38272202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 151
Target Start/End: Complemental strand, 31701108 - 31700990
Alignment:
| Q |
33 |
caaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtca-agctgaacacaaccacagtagtcaatatga |
131 |
Q |
| |
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|||||||||| ||||| | ||| | ||||||| ||||| |||| |||||||||||||||||||||| |||| | ||| ||||||| ||||||||| | |
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| T |
31701108 |
caaacaagaaggggccaaggaagttgaaatcatagcctctacttgcagcccaaaatgtgtagagagtcagagct-atcaccaccacagcagtcaatataa |
31701010 |
T |
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| Q |
132 |
cagcttctagaattactttc |
151 |
Q |
| |
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||||||| |||||||||||| |
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| T |
31701009 |
cagcttccagaattactttc |
31700990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 16238514 - 16238565
Alignment:
| Q |
90 |
tgtagagagtcaagctgaacacaaccacagtagtcaatatgacagcttctaga |
142 |
Q |
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|||||||| |||||||||||||||||| | |||||||||| | |||||||||| |
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| T |
16238514 |
tgtagagaatcaagctgaacacaacca-aatagtcaatataatagcttctaga |
16238565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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