View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20048_low_4 (Length: 328)
Name: NF20048_low_4
Description: NF20048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20048_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 38315079 - 38314776
Alignment:
| Q |
1 |
gaattgaagtttcgtacgaagtcatccgattctactttactggaactcctactcctaatcctaaacctcctttaattctctcttctttataacaacttca |
100 |
Q |
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| T |
38315079 |
gaattgaaatttcgtacgaagtcatccgattctactttactggaactcctactcctaatcctaaacctcctttaattctctcttctttataacaacttca |
38314980 |
T |
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| Q |
101 |
tagcggtgttgtgttgtgttgagtcggttacactacactatttggaaaagttgtgnnnnnnnnnntatatgtcttcgaaaagagatgtggagagtgggga |
200 |
Q |
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| T |
38314979 |
tagcggtgttgtgttg-----agtcggttacactacactatttggaaaagttgtgaaaaaaaaaaaa-atgtcttcgaaaagagatgtggagagtgggga |
38314886 |
T |
|
| Q |
201 |
aagaaccctttaccctacgatgcttgagagccctgaactaagatggtccttcatacgtaaggtttattccatcatcacttttcagttgcttctcaccgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38314885 |
aagaaccctttaccctacgatgcttgagagccctgaactaagatggtccttcatacgtaaggtttattccatcatcacttttcagttgcttctcaccgtt |
38314786 |
T |
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| Q |
301 |
gctgttgcct |
310 |
Q |
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|||||||||| |
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| T |
38314785 |
gctgttgcct |
38314776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 178 - 296
Target Start/End: Complemental strand, 38304426 - 38304308
Alignment:
| Q |
178 |
aaaagagatgtggagagtggggaaagaaccctttaccctacgatgcttgagagccctgaactaagatggtccttcatacgtaaggtttattccatcatca |
277 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||| | ||||||| |||||| ||||||||| |||||||||||||||||| ||| |
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| T |
38304426 |
aaaagagatgtggagagtggggaaagaatcctttaccctacgatacttgaaaaccctgaattaagattgtccttcattcgtaaggtttattccatcctca |
38304327 |
T |
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| Q |
278 |
cttttcagttgcttctcac |
296 |
Q |
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| T |
38304326 |
cctttcagttgcttctcac |
38304308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 190 - 310
Target Start/End: Complemental strand, 38272777 - 38272657
Alignment:
| Q |
190 |
gagagtggggaaagaaccctttaccctacgatgcttgagagccctgaactaagatggtccttcatacgtaaggtttattccatcatcacttttcagttgc |
289 |
Q |
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|||||||| | ||| ||||||||||||||| ||||||||||||||||| |||||||| ||||||||| |||||| || |||||| |||| |||||||||| |
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| T |
38272777 |
gagagtggaggaagtaccctttaccctacgttgcttgagagccctgaattaagatggcccttcatacttaaggtatactccatcctcacctttcagttgc |
38272678 |
T |
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| Q |
290 |
ttctcaccgttgctgttgcct |
310 |
Q |
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|||||||| |||| ||||||| |
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| T |
38272677 |
ttctcaccattgccgttgcct |
38272657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 206 - 293
Target Start/End: Complemental strand, 38276475 - 38276388
Alignment:
| Q |
206 |
ccctttaccctacgatgcttgagagccctgaactaagatggtccttcatacgtaaggtttattccatcatcacttttcagttgcttct |
293 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||| ||||||||||||| |
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| T |
38276475 |
ccctttaccctacgatgcttgagagccctgaattaagatggtccttcatacgtaaggtatactccatcatcacaattcagttgcttct |
38276388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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